Wall clock time and date at job start Mon Mar 30 2020 06:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38271 * 119.97844 * 2 1 4 4 C 1.38169 * 120.02718 * 180.02562 * 3 2 1 5 5 C 1.38480 * 119.97591 * 359.97438 * 4 3 2 6 6 F 1.35104 * 120.02574 * 180.02562 * 5 4 3 7 7 C 1.38440 * 119.94933 * 359.74921 * 5 4 3 8 8 C 1.38218 * 119.97424 * 180.02562 * 2 1 3 9 9 C 1.50705 * 119.98673 * 359.95478 * 8 2 1 10 10 H 1.08996 * 110.54708 * 326.42324 * 9 8 2 11 11 C 1.54990 * 110.61871 * 89.47596 * 9 8 2 12 12 C 1.54810 * 102.09189 * 155.52413 * 11 9 8 13 13 C 1.54102 * 104.18795 * 339.11923 * 12 11 9 14 14 C 1.53005 * 109.99967 * 117.46468 * 13 12 11 15 15 C 1.50700 * 109.87823 * 238.54258 * 13 12 11 16 16 H 1.07996 * 120.00066 * 353.64217 * 15 13 12 17 17 C 1.37875 * 119.99930 * 173.63927 * 15 13 12 18 18 N 1.31520 * 120.00023 * 354.56967 * 17 15 13 19 19 Si 1.86795 * 120.00179 * 174.56860 * 17 15 13 20 20 H 1.48503 * 109.47114 * 265.19054 * 19 17 15 21 21 H 1.48495 * 109.47458 * 145.18948 * 19 17 15 22 22 H 1.48507 * 109.46985 * 25.19015 * 19 17 15 23 23 O 1.43739 * 107.29397 * 357.97109 * 13 12 11 24 24 H 1.09004 * 109.47230 * 269.97819 * 1 2 3 25 25 H 1.09007 * 109.47089 * 29.97364 * 1 2 3 26 26 H 1.08995 * 109.47362 * 149.97512 * 1 2 3 27 27 H 1.08000 * 119.98085 * 0.04520 * 3 2 1 28 28 H 1.07999 * 120.00822 * 179.97438 * 4 3 2 29 29 H 1.07993 * 120.01280 * 180.25313 * 7 5 4 30 30 H 1.09000 * 110.90645 * 273.72226 * 11 9 8 31 31 H 1.09005 * 110.90976 * 37.29244 * 11 9 8 32 32 H 1.09001 * 110.49357 * 220.44185 * 12 11 9 33 33 H 1.09005 * 110.48552 * 97.79691 * 12 11 9 34 34 H 1.09001 * 109.46631 * 186.36382 * 14 13 12 35 35 H 1.08998 * 109.46903 * 306.35727 * 14 13 12 36 36 H 1.09000 * 109.47557 * 66.36467 * 14 13 12 37 37 H 0.96996 * 120.00003 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1977 0.0000 4 6 3.5796 1.1989 -0.0005 5 6 4.2725 -0.0001 -0.0005 6 9 5.6235 -0.0001 -0.0005 7 6 3.5798 -1.1987 0.0053 8 6 2.1975 -1.1973 -0.0005 9 6 1.4431 -2.5019 -0.0001 10 1 0.5159 -2.4075 0.5650 11 6 1.1574 -2.9677 -1.4505 12 6 0.9992 -4.4976 -1.2746 13 6 1.7154 -4.8009 0.0558 14 6 0.7176 -5.3613 1.0714 15 6 2.8247 -5.7947 -0.1744 16 1 2.9441 -6.2557 -1.1437 17 6 3.6871 -6.1154 0.8524 18 7 3.6097 -5.4770 1.9997 19 14 4.9653 -7.4565 0.6143 20 1 4.4333 -8.7443 1.1278 21 1 6.2010 -7.1001 1.3568 22 1 5.2779 -7.5912 -0.8313 23 8 2.2614 -3.5622 0.5392 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8903 -0.5135 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6572 2.1326 0.0007 28 1 4.1189 2.1346 -0.0010 29 1 4.1191 -2.1343 0.0094 30 1 0.2369 -2.5223 -1.8278 31 1 1.9969 -2.7358 -2.1060 32 1 1.4803 -5.0280 -2.0964 33 1 -0.0550 -4.7673 -1.2105 34 1 1.2059 -5.4664 2.0403 35 1 -0.1286 -4.6804 1.1630 36 1 0.3650 -6.3361 0.7345 37 1 4.2161 -5.7028 2.7222 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310345694.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:44 Heat of formation + Delta-G solvation = -75.166489 kcal Electronic energy + Delta-G solvation = -20444.519068 eV Core-core repulsion = 17293.833009 eV Total energy + Delta-G solvation = -3150.686059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.50635 -39.53095 -37.83806 -33.21382 -32.31076 -31.30361 -30.90734 -29.02218 -26.47455 -25.52080 -24.70494 -22.26969 -21.29238 -20.05715 -19.36162 -17.24212 -16.49636 -16.20099 -15.23985 -15.15050 -14.84032 -14.48632 -14.02016 -13.58961 -13.53523 -13.34020 -13.01129 -12.78339 -12.46493 -11.97343 -11.88252 -11.64256 -11.38475 -11.27650 -11.02703 -10.86747 -10.74970 -10.48578 -10.37488 -10.22973 -9.84284 -9.62100 -9.05960 -8.57457 -8.50686 -8.19201 -7.95387 -5.96037 -4.09953 1.42440 1.56414 3.30708 3.38951 3.41071 3.84285 4.43229 4.57987 4.80794 4.94567 5.15358 5.26831 5.35142 5.42925 5.50694 5.61482 5.73298 5.74553 5.88791 5.97427 6.08549 6.11264 6.31772 6.34936 6.44380 6.51091 6.53778 6.61167 6.73531 6.78512 6.82923 6.92802 7.12688 7.21391 7.26843 7.77134 7.97878 8.32576 8.52524 9.02590 9.59539 11.08154 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019911 B = 0.007122 C = 0.005719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.895976 B = 3930.519472 C = 4894.615701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.097 4.097 3 C -0.101 4.101 4 C -0.162 4.162 5 C 0.085 3.915 6 F -0.145 7.145 7 C -0.115 4.115 8 C -0.036 4.036 9 C 0.099 3.901 10 H 0.064 0.936 11 C -0.139 4.139 12 C -0.141 4.141 13 C 0.225 3.775 14 C -0.143 4.143 15 C -0.529 4.529 16 H 0.062 0.938 17 C 0.081 3.919 18 N -0.853 5.853 19 Si 0.885 3.115 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 O -0.326 6.326 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.151 0.849 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.012 0.988 36 H 0.040 0.960 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 10.906 -4.032 12.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.098 4.098 3 C -0.119 4.119 4 C -0.180 4.180 5 C 0.065 3.935 6 F -0.123 7.123 7 C -0.134 4.134 8 C -0.036 4.036 9 C 0.040 3.960 10 H 0.082 0.918 11 C -0.177 4.177 12 C -0.179 4.179 13 C 0.188 3.812 14 C -0.201 4.201 15 C -0.567 4.567 16 H 0.080 0.920 17 C -0.125 4.125 18 N -0.488 5.488 19 Si 0.713 3.287 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 O -0.245 6.245 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.169 0.831 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.031 0.969 36 H 0.059 0.941 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.201 10.932 -3.702 12.660 hybrid contribution 0.895 -0.697 -0.138 1.143 sum -4.306 10.235 -3.839 11.749 Atomic orbital electron populations 1.20813 0.91128 1.02731 1.02438 1.19732 0.96275 0.92297 1.01458 1.20697 0.92946 0.97457 1.00780 1.20990 0.94961 0.96674 1.05422 1.17768 0.76765 0.94694 1.04225 1.91470 1.29310 1.97457 1.94107 1.21243 0.94771 0.97781 0.99599 1.19619 0.92904 0.94278 0.96827 1.21783 0.93356 0.87352 0.93541 0.91849 1.23055 1.00776 0.97014 0.96850 1.23088 0.99719 0.93978 1.01103 1.19668 0.91611 0.83083 0.86883 1.22106 0.96782 0.98095 1.03124 1.21051 1.14773 1.23322 0.97511 0.91954 1.25022 0.96805 0.95415 0.95303 1.70067 1.36735 1.38580 1.03452 0.86709 0.81379 0.82325 0.78334 1.20659 1.21172 1.19839 1.89373 1.50481 1.13392 1.71225 0.91113 0.91750 0.91064 0.85551 0.85436 0.83130 0.92113 0.91341 0.91421 0.92862 0.90754 0.96905 0.94114 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.23 36.00 0.33 -1.01 16 2 C -0.10 -1.44 5.88 -104.62 -0.62 -2.06 16 3 C -0.10 -1.33 9.70 -39.59 -0.38 -1.71 16 4 C -0.16 -2.31 10.03 -39.52 -0.40 -2.71 16 5 C 0.08 1.47 7.30 -39.42 -0.29 1.18 16 6 F -0.14 -2.60 17.27 2.25 0.04 -2.56 16 7 C -0.12 -2.25 9.36 -39.51 -0.37 -2.62 16 8 C -0.04 -0.65 5.12 -104.63 -0.54 -1.19 16 9 C 0.10 1.94 2.68 -26.83 -0.07 1.86 16 10 H 0.06 1.19 6.98 -51.93 -0.36 0.83 16 11 C -0.14 -2.50 6.42 -24.73 -0.16 -2.66 16 12 C -0.14 -2.85 6.27 -25.20 -0.16 -3.01 16 13 C 0.23 5.48 0.74 -91.19 -0.07 5.41 16 14 C -0.14 -3.36 8.39 37.16 0.31 -3.04 16 15 C -0.53 -14.32 8.21 -34.44 -0.28 -14.60 16 16 H 0.06 1.66 7.36 -52.49 -0.39 1.28 16 17 C 0.08 2.22 5.25 -17.82 -0.09 2.13 16 18 N -0.85 -24.43 11.29 55.43 0.63 -23.80 16 19 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 O -0.33 -8.12 8.46 -35.23 -0.30 -8.42 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.07 0.85 5.96 -51.93 -0.31 0.54 16 27 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 28 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.15 3.36 7.36 -52.49 -0.39 2.98 16 30 H 0.06 0.90 7.46 -51.93 -0.39 0.52 16 31 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 32 H 0.07 1.37 7.41 -51.93 -0.38 0.99 16 33 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 34 H 0.07 1.94 6.88 -51.93 -0.36 1.58 16 35 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 304.53 15.07 4.59 4.59 Total: -1.00 -29.26 304.53 -7.90 -37.16 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.06 Total: 0.91 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -2.78 Total: -24.02 kcal Atomic # 7 Polarization: -24.43 SS G_CDS: 0.63 Total: -23.80 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.30 Total: -8.42 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.26 -7.90 -37.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310345694.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.002 kcal (2) G-P(sol) polarization free energy of solvation -29.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds