Wall clock time and date at job start Mon Mar 30 2020 06:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38216 * 119.98756 * 2 1 4 4 C 1.38437 * 119.97397 * 180.02562 * 3 2 1 5 5 F 1.35103 * 120.02747 * 180.02562 * 4 3 2 6 6 C 1.38482 * 119.95028 * 359.97438 * 4 3 2 7 7 C 1.38172 * 119.96928 * 359.71317 * 6 4 3 8 8 C 1.38223 * 119.98677 * 179.97438 * 2 1 3 9 9 C 1.50702 * 119.97051 * 0.02562 * 8 2 1 10 10 H 1.08998 * 109.49146 * 325.02141 * 9 8 2 11 11 C 1.53090 * 109.47962 * 85.05909 * 9 8 2 12 12 C 1.53184 * 109.16059 * 177.58607 * 11 9 8 13 13 C 1.53178 * 109.04509 * 303.02619 * 12 11 9 14 14 C 1.53090 * 109.16476 * 56.96253 * 13 12 11 15 15 H 1.09001 * 109.48048 * 62.39735 * 14 13 12 16 16 C 1.50700 * 109.47967 * 182.41861 * 14 13 12 17 17 H 1.08002 * 119.99770 * 359.97438 * 16 14 13 18 18 C 1.37871 * 120.00083 * 179.97438 * 16 14 13 19 19 N 1.31514 * 120.00147 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00278 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 300.00001 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00094 * 20 18 16 24 24 O 1.42899 * 109.42512 * 302.40647 * 14 13 12 25 25 H 1.08991 * 109.47320 * 270.02288 * 1 2 3 26 26 H 1.09005 * 109.46944 * 30.02582 * 1 2 3 27 27 H 1.08998 * 109.47025 * 150.02005 * 1 2 3 28 28 H 1.07997 * 120.01219 * 0.02562 * 3 2 1 29 29 H 1.07994 * 120.01284 * 180.02562 * 6 4 3 30 30 H 1.08002 * 119.98453 * 180.29170 * 7 6 4 31 31 H 1.09000 * 109.52335 * 297.48665 * 11 9 8 32 32 H 1.09000 * 109.52430 * 57.62075 * 11 9 8 33 33 H 1.09003 * 109.53918 * 62.88531 * 12 11 9 34 34 H 1.08995 * 109.54190 * 183.06017 * 12 11 9 35 35 H 1.09001 * 109.51456 * 297.05572 * 13 12 11 36 36 H 1.09003 * 109.53308 * 176.87717 * 13 12 11 37 37 H 0.97005 * 119.99661 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1971 0.0000 4 6 3.5822 1.1968 -0.0005 5 9 4.2586 2.3663 0.0000 6 6 4.2733 -0.0032 -0.0005 7 6 3.5805 -1.1987 0.0060 8 6 2.1979 -1.1972 0.0005 9 6 1.4434 -2.5018 0.0005 10 1 0.5323 -2.3950 0.5892 11 6 1.0807 -2.8818 -1.4374 12 6 0.3676 -4.2375 -1.4346 13 6 1.2741 -5.2777 -0.7693 14 6 1.6296 -4.8050 0.6427 15 1 0.7209 -4.7284 1.2399 16 6 2.5693 -5.7944 1.2822 17 1 2.8817 -6.6727 0.7368 18 6 3.0303 -5.5784 2.5635 19 7 2.6495 -4.5091 3.2278 20 14 4.1957 -6.8044 3.3560 21 1 4.5413 -6.3451 4.7252 22 1 3.5393 -8.1344 3.4304 23 1 5.4335 -6.9081 2.5422 24 8 2.2617 -3.5254 0.5705 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5143 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6578 2.1324 0.0004 29 1 5.3532 -0.0047 -0.0005 30 1 4.1192 -2.1348 0.0108 31 1 0.4205 -2.1239 -1.8590 32 1 1.9888 -2.9481 -2.0367 33 1 -0.5656 -4.1574 -0.8770 34 1 0.1549 -4.5397 -2.4600 35 1 2.1860 -5.3938 -1.3550 36 1 0.7524 -6.2331 -0.7131 37 1 2.0446 -3.8722 2.8162 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310437744.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:29 Heat of formation + Delta-G solvation = -92.446960 kcal Electronic energy + Delta-G solvation = -20294.569752 eV Core-core repulsion = 17143.134356 eV Total energy + Delta-G solvation = -3151.435396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.71214 -39.64616 -37.80845 -33.47023 -32.72951 -32.56920 -31.21859 -28.77479 -26.95885 -25.35540 -23.68905 -22.06003 -21.95653 -20.57975 -19.48827 -17.27644 -16.94419 -16.41357 -15.56538 -15.42112 -14.70387 -14.52998 -14.12488 -13.83715 -13.73238 -13.56159 -13.21011 -13.14896 -13.03214 -12.64399 -12.02532 -11.80494 -11.54413 -11.35011 -11.24597 -10.84463 -10.77075 -10.56535 -10.34439 -10.26567 -10.06163 -9.72950 -8.68525 -8.67856 -8.50142 -8.31369 -8.01795 -6.37471 -4.17050 1.36550 1.48271 3.42817 3.45119 3.63676 3.79176 4.42443 4.48991 4.63444 4.95867 5.00159 5.16628 5.29030 5.38803 5.41747 5.47294 5.58294 5.65170 5.68408 5.77826 5.88943 5.93607 5.98045 6.14093 6.23310 6.29063 6.37693 6.40849 6.47729 6.59810 6.65697 6.69508 6.71188 6.93009 7.16076 7.25673 8.06074 8.35440 8.68232 8.86330 9.65288 11.02647 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019198 B = 0.006468 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.116007 B = 4327.717016 C = 5262.369368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.057 4.057 3 C -0.161 4.161 4 C 0.089 3.911 5 F -0.147 7.147 6 C -0.162 4.162 7 C -0.054 4.054 8 C -0.075 4.075 9 C 0.121 3.879 10 H 0.054 0.946 11 C -0.138 4.138 12 C -0.122 4.122 13 C -0.136 4.136 14 C 0.204 3.796 15 H 0.006 0.994 16 C -0.601 4.601 17 H 0.057 0.943 18 C 0.033 3.967 19 N -0.886 5.886 20 Si 1.067 2.933 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.287 1.287 24 O -0.366 6.366 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.144 0.856 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.277 8.238 -7.950 11.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.057 4.057 3 C -0.180 4.180 4 C 0.070 3.930 5 F -0.126 7.126 6 C -0.181 4.181 7 C -0.072 4.072 8 C -0.075 4.075 9 C 0.062 3.938 10 H 0.072 0.928 11 C -0.176 4.176 12 C -0.159 4.159 13 C -0.174 4.174 14 C 0.149 3.851 15 H 0.023 0.977 16 C -0.638 4.638 17 H 0.075 0.925 18 C -0.176 4.176 19 N -0.520 5.520 20 Si 0.895 3.105 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.213 1.213 24 O -0.286 6.286 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.162 0.838 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.231 8.003 -6.507 10.553 hybrid contribution -0.911 0.569 -1.564 1.897 sum -3.142 8.573 -8.070 12.186 Atomic orbital electron populations 1.20891 0.90861 1.02946 1.02854 1.19485 0.96154 0.91518 0.98522 1.20811 0.92119 0.98733 1.06302 1.17664 0.90134 0.81091 1.04134 1.91456 1.80432 1.46504 1.94197 1.21155 1.00719 0.91246 1.04986 1.21028 0.93829 0.97910 0.94402 1.19786 0.94080 0.93856 0.99811 1.20626 0.93231 0.86884 0.93021 0.92802 1.22134 1.00683 0.97185 0.97602 1.21645 0.98703 0.95533 1.00037 1.22126 0.98530 0.97448 0.99333 1.19912 0.94051 0.80845 0.90302 0.97677 1.21864 1.34201 1.06520 1.01251 0.92508 1.25850 0.98096 0.99203 0.94447 1.70666 1.30560 1.10465 1.40318 0.83587 0.75842 0.74774 0.76295 1.20704 1.21366 1.21331 1.88370 1.40918 1.18580 1.80741 0.90682 0.91514 0.90783 0.85215 0.85067 0.83789 0.92180 0.91527 0.92640 0.92742 0.92299 0.92314 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 9.22 36.01 0.33 -1.12 16 2 C -0.06 -0.86 5.88 -104.63 -0.62 -1.47 16 3 C -0.16 -2.32 9.68 -39.52 -0.38 -2.70 16 4 C 0.09 1.38 7.30 -39.42 -0.29 1.09 16 5 F -0.15 -2.24 17.27 2.25 0.04 -2.20 16 6 C -0.16 -2.60 10.03 -39.52 -0.40 -3.00 16 7 C -0.05 -0.97 9.35 -39.60 -0.37 -1.34 16 8 C -0.08 -1.33 5.07 -104.62 -0.53 -1.86 16 9 C 0.12 2.32 2.16 -27.84 -0.06 2.26 16 10 H 0.05 1.04 6.99 -51.93 -0.36 0.67 16 11 C -0.14 -2.28 5.23 -26.59 -0.14 -2.42 16 12 C -0.12 -2.04 6.03 -26.54 -0.16 -2.20 16 13 C -0.14 -2.80 5.36 -26.59 -0.14 -2.94 16 14 C 0.20 5.06 2.10 -27.84 -0.06 5.00 16 15 H 0.01 0.15 8.01 -51.93 -0.42 -0.27 16 16 C -0.60 -16.72 8.79 -34.44 -0.30 -17.02 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.03 0.93 5.40 -17.82 -0.10 0.84 16 19 N -0.89 -26.60 13.53 55.43 0.75 -25.85 16 20 Si 1.07 24.84 29.90 -169.99 -5.08 19.75 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 24 O -0.37 -8.82 7.55 -35.23 -0.27 -9.09 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.07 0.90 5.41 -51.93 -0.28 0.61 16 28 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.14 2.82 7.34 -52.49 -0.39 2.43 16 31 H 0.06 0.84 6.87 -51.93 -0.36 0.48 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.28 8.45 6.47 -40.82 -0.26 8.18 16 LS Contribution 303.05 15.07 4.57 4.57 Total: -1.00 -29.97 303.05 -8.27 -38.24 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.07 Total: 1.47 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -3.21 Total: -26.89 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.75 Total: -25.85 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.27 Total: -9.09 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.08 Total: 19.75 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.97 -8.27 -38.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310437744.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.204 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds