Wall clock time and date at job start Mon Mar 30 2020 06:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38216 * 119.98756 * 2 1 4 4 C 1.38437 * 119.97397 * 180.02562 * 3 2 1 5 5 F 1.35103 * 120.02747 * 180.02562 * 4 3 2 6 6 C 1.38482 * 119.95028 * 359.97438 * 4 3 2 7 7 C 1.38172 * 119.96928 * 359.71317 * 6 4 3 8 8 C 1.38223 * 119.98677 * 179.97438 * 2 1 3 9 9 C 1.50702 * 119.97051 * 0.02562 * 8 2 1 10 10 H 1.08998 * 109.49146 * 325.02141 * 9 8 2 11 11 C 1.53090 * 109.47962 * 85.05909 * 9 8 2 12 12 C 1.53184 * 109.16059 * 177.58607 * 11 9 8 13 13 C 1.53178 * 109.04509 * 303.02619 * 12 11 9 14 14 C 1.53090 * 109.16476 * 56.96253 * 13 12 11 15 15 H 1.09001 * 109.48048 * 62.39735 * 14 13 12 16 16 C 1.50700 * 109.47967 * 182.41861 * 14 13 12 17 17 H 1.08002 * 119.99770 * 359.97438 * 16 14 13 18 18 C 1.37871 * 120.00083 * 179.97438 * 16 14 13 19 19 N 1.31514 * 120.00147 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00278 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 300.00001 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00094 * 20 18 16 24 24 O 1.42899 * 109.42512 * 302.40647 * 14 13 12 25 25 H 1.08991 * 109.47320 * 270.02288 * 1 2 3 26 26 H 1.09005 * 109.46944 * 30.02582 * 1 2 3 27 27 H 1.08998 * 109.47025 * 150.02005 * 1 2 3 28 28 H 1.07997 * 120.01219 * 0.02562 * 3 2 1 29 29 H 1.07994 * 120.01284 * 180.02562 * 6 4 3 30 30 H 1.08002 * 119.98453 * 180.29170 * 7 6 4 31 31 H 1.09000 * 109.52335 * 297.48665 * 11 9 8 32 32 H 1.09000 * 109.52430 * 57.62075 * 11 9 8 33 33 H 1.09003 * 109.53918 * 62.88531 * 12 11 9 34 34 H 1.08995 * 109.54190 * 183.06017 * 12 11 9 35 35 H 1.09001 * 109.51456 * 297.05572 * 13 12 11 36 36 H 1.09003 * 109.53308 * 176.87717 * 13 12 11 37 37 H 0.97005 * 119.99661 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1971 0.0000 4 6 3.5822 1.1968 -0.0005 5 9 4.2586 2.3663 0.0000 6 6 4.2733 -0.0032 -0.0005 7 6 3.5805 -1.1987 0.0060 8 6 2.1979 -1.1972 0.0005 9 6 1.4434 -2.5018 0.0005 10 1 0.5323 -2.3950 0.5892 11 6 1.0807 -2.8818 -1.4374 12 6 0.3676 -4.2375 -1.4346 13 6 1.2741 -5.2777 -0.7693 14 6 1.6296 -4.8050 0.6427 15 1 0.7209 -4.7284 1.2399 16 6 2.5693 -5.7944 1.2822 17 1 2.8817 -6.6727 0.7368 18 6 3.0303 -5.5784 2.5635 19 7 2.6495 -4.5091 3.2278 20 14 4.1957 -6.8044 3.3560 21 1 4.5413 -6.3451 4.7252 22 1 3.5393 -8.1344 3.4304 23 1 5.4335 -6.9081 2.5422 24 8 2.2617 -3.5254 0.5705 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5143 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6578 2.1324 0.0004 29 1 5.3532 -0.0047 -0.0005 30 1 4.1192 -2.1348 0.0108 31 1 0.4205 -2.1239 -1.8590 32 1 1.9888 -2.9481 -2.0367 33 1 -0.5656 -4.1574 -0.8770 34 1 0.1549 -4.5397 -2.4600 35 1 2.1860 -5.3938 -1.3550 36 1 0.7524 -6.2331 -0.7131 37 1 2.0446 -3.8722 2.8162 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310437744.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:29 Heat of formation + Delta-G solvation = -107.947776 kcal Electronic energy + Delta-G solvation = -20295.241918 eV Core-core repulsion = 17143.134356 eV Total energy + Delta-G solvation = -3152.107562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.92908 -41.04454 -39.35170 -35.28576 -34.35766 -33.90080 -32.78873 -30.30421 -28.10620 -27.16336 -25.26800 -23.84234 -23.23352 -21.93162 -21.03840 -19.23866 -18.22396 -17.77684 -16.98078 -16.64467 -16.38787 -16.00137 -15.71149 -15.61927 -15.23670 -15.08153 -14.54591 -14.35648 -14.20828 -13.96851 -13.58815 -13.16700 -13.02814 -12.80805 -12.69454 -12.62285 -12.17533 -12.07914 -11.94464 -11.84525 -11.80831 -11.30202 -10.72212 -10.43386 -10.10625 -9.90263 -9.42075 -8.61027 -6.41786 0.09343 0.23244 1.52881 1.60921 1.80145 2.50607 2.56697 2.96374 3.20501 3.42073 3.74371 3.80735 3.86508 4.01896 4.02710 4.15537 4.23932 4.33891 4.37202 4.42539 4.62528 4.71343 4.76112 4.79128 4.85314 4.95569 4.99294 5.09019 5.10899 5.13320 5.18355 5.25910 5.33906 5.45473 5.62767 5.90738 6.00499 6.14817 6.58222 6.91845 7.50670 8.77838 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019198 B = 0.006468 C = 0.005320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.116007 B = 4327.717016 C = 5262.369368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.053 4.053 3 C -0.151 4.151 4 C 0.086 3.914 5 F -0.143 7.143 6 C -0.166 4.166 7 C -0.076 4.076 8 C -0.096 4.096 9 C 0.116 3.884 10 H 0.050 0.950 11 C -0.130 4.130 12 C -0.115 4.115 13 C -0.131 4.131 14 C 0.201 3.799 15 H -0.022 1.022 16 C -0.621 4.621 17 H 0.054 0.946 18 C -0.017 4.017 19 N -0.915 5.915 20 Si 1.113 2.887 21 H -0.284 1.284 22 H -0.265 1.265 23 H -0.274 1.274 24 O -0.393 6.393 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.164 0.836 29 H 0.144 0.856 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.215 9.372 -9.209 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.053 4.053 3 C -0.170 4.170 4 C 0.067 3.933 5 F -0.122 7.122 6 C -0.185 4.185 7 C -0.095 4.095 8 C -0.096 4.096 9 C 0.058 3.942 10 H 0.068 0.932 11 C -0.168 4.168 12 C -0.152 4.152 13 C -0.169 4.169 14 C 0.146 3.854 15 H -0.004 1.004 16 C -0.658 4.658 17 H 0.073 0.927 18 C -0.219 4.219 19 N -0.550 5.550 20 Si 0.935 3.065 21 H -0.210 1.210 22 H -0.190 1.190 23 H -0.199 1.199 24 O -0.313 6.313 25 H 0.096 0.904 26 H 0.117 0.883 27 H 0.093 0.907 28 H 0.181 0.819 29 H 0.162 0.838 30 H 0.134 0.866 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.182 9.138 -7.792 12.424 hybrid contribution -0.639 0.299 -1.207 1.398 sum -3.821 9.436 -8.999 13.588 Atomic orbital electron populations 1.20981 0.88436 1.04597 1.03511 1.19776 0.97849 0.90549 0.97166 1.21164 0.91682 0.99780 1.04333 1.17760 0.90777 0.80841 1.03929 1.91468 1.80498 1.46107 1.94141 1.21228 1.01493 0.90957 1.04773 1.20855 0.94342 0.97602 0.96675 1.19830 0.93990 0.94276 1.01491 1.20841 0.92590 0.86335 0.94393 0.93190 1.22087 1.01080 0.98054 0.95578 1.21625 0.97869 0.94247 1.01508 1.22003 0.99165 0.98885 0.96851 1.19750 0.92131 0.81234 0.92329 1.00444 1.22297 1.34187 1.07491 1.01833 0.92748 1.27293 0.99097 1.00040 0.95508 1.70789 1.32040 1.11503 1.40707 0.83007 0.74594 0.73605 0.75334 1.20991 1.19033 1.19922 1.88249 1.42070 1.19174 1.81831 0.90425 0.88305 0.90719 0.81858 0.83809 0.86649 0.88709 0.92227 0.91859 0.89466 0.93157 0.91993 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 9.22 71.24 0.66 -1.87 16 2 C -0.05 -1.50 5.88 -19.87 -0.12 -1.62 16 3 C -0.15 -3.92 9.68 22.31 0.22 -3.71 16 4 C 0.09 2.52 7.30 22.38 0.16 2.68 16 5 F -0.14 -4.05 17.27 44.97 0.78 -3.27 16 6 C -0.17 -5.30 10.03 22.31 0.22 -5.08 16 7 C -0.08 -2.85 9.35 22.26 0.21 -2.64 16 8 C -0.10 -3.39 5.07 -19.86 -0.10 -3.49 16 9 C 0.12 4.49 2.16 29.88 0.06 4.55 16 10 H 0.05 1.94 6.99 -2.39 -0.02 1.92 16 11 C -0.13 -4.10 5.23 30.69 0.16 -3.94 16 12 C -0.12 -3.63 6.03 30.72 0.19 -3.45 16 13 C -0.13 -5.39 5.36 30.68 0.16 -5.23 16 14 C 0.20 10.33 2.10 29.88 0.06 10.39 16 15 H -0.02 -1.21 8.01 -2.39 -0.02 -1.23 16 16 C -0.62 -35.61 8.79 25.60 0.23 -35.39 16 17 H 0.05 3.05 7.74 -2.91 -0.02 3.02 16 18 C -0.02 -1.00 5.40 84.65 0.46 -0.54 16 19 N -0.91 -56.99 13.53 21.45 0.29 -56.70 16 20 Si 1.11 50.68 29.90 68.60 2.05 52.74 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 O -0.39 -19.73 7.55 -148.98 -1.13 -20.85 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 26 H 0.10 1.48 8.09 -2.38 -0.02 1.46 16 27 H 0.07 1.58 5.41 -2.39 -0.01 1.56 16 28 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 29 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 30 H 0.12 4.87 7.34 -2.91 -0.02 4.85 16 31 H 0.09 2.34 6.87 -2.39 -0.02 2.32 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.27 16.85 6.47 -92.70 -0.60 16.25 16 Total: -1.00 -67.38 303.05 5.79 -61.59 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.23 Total: 15.81 kcal Atomic # 6 Polarization: -51.89 SS G_CDS: 2.57 Total: -49.32 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.29 Total: -56.70 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -1.13 Total: -20.85 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.78 Total: -3.27 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.05 Total: 52.74 kcal Total: -67.38 5.79 -61.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310437744.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.359 kcal (2) G-P(sol) polarization free energy of solvation -67.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds