Wall clock time and date at job start Mon Mar 30 2020 06:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38220 * 119.98940 * 2 1 4 4 C 1.38437 * 119.97642 * 180.28103 * 3 2 1 5 5 F 1.35094 * 120.02968 * 179.77016 * 4 3 2 6 6 C 1.38481 * 119.94623 * 359.73886 * 4 3 2 7 7 C 1.38179 * 119.97474 * 0.02562 * 6 4 3 8 8 C 1.38226 * 119.98654 * 179.77262 * 2 1 3 9 9 C 1.50704 * 119.97324 * 359.97438 * 8 2 1 10 10 H 1.08998 * 109.48982 * 34.75408 * 9 8 2 11 11 C 1.53098 * 109.47884 * 274.72765 * 9 8 2 12 12 C 1.53174 * 109.15827 * 182.40911 * 11 9 8 13 13 C 1.53178 * 109.03798 * 56.98297 * 12 11 9 14 14 C 1.53098 * 109.15976 * 303.01519 * 13 12 11 15 15 H 1.09001 * 109.47663 * 177.60127 * 14 13 12 16 16 C 1.50696 * 109.47990 * 297.62607 * 14 13 12 17 17 H 1.07999 * 120.00202 * 359.97438 * 16 14 13 18 18 C 1.37884 * 119.99746 * 180.02562 * 16 14 13 19 19 N 1.31514 * 119.99573 * 0.27650 * 18 16 14 20 20 Si 1.86800 * 119.99781 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47035 * 60.00183 * 20 18 16 22 22 H 1.48503 * 109.46845 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47237 * 299.99939 * 20 18 16 24 24 O 1.42896 * 109.47909 * 154.78570 * 9 8 2 25 25 H 1.08994 * 109.46424 * 270.23110 * 1 2 3 26 26 H 1.08996 * 109.47105 * 30.23227 * 1 2 3 27 27 H 1.08995 * 109.47044 * 150.23105 * 1 2 3 28 28 H 1.08001 * 120.01078 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.01526 * 179.97438 * 6 4 3 30 30 H 1.08003 * 119.98544 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.52293 * 62.50210 * 11 9 8 32 32 H 1.09002 * 109.57042 * 302.34579 * 11 9 8 33 33 H 1.09000 * 109.54841 * 297.11161 * 12 11 9 34 34 H 1.09000 * 109.61434 * 176.88817 * 12 11 9 35 35 H 1.09003 * 109.52191 * 183.11108 * 13 12 11 36 36 H 1.08999 * 109.57507 * 62.95216 * 13 12 11 37 37 H 0.97001 * 120.00651 * 359.71956 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1971 0.0000 4 6 3.5823 1.1968 -0.0059 5 9 4.2586 2.3663 -0.0106 6 6 4.2733 -0.0032 -0.0063 7 6 3.5805 -1.1988 -0.0014 8 6 2.1979 -1.1972 0.0048 9 6 1.4435 -2.5018 0.0105 10 1 0.5304 -2.3965 -0.5753 11 6 1.0855 -2.8782 1.4507 12 6 0.3724 -4.2338 1.4535 13 6 1.2769 -5.2756 0.7882 14 6 1.6275 -4.8066 -0.6264 15 1 2.3055 -5.5235 -1.0894 16 6 0.3684 -4.7027 -1.4479 17 1 -0.5864 -4.9469 -1.0061 18 6 0.4354 -4.2967 -2.7639 19 7 1.5988 -4.0054 -3.3037 20 14 -1.1252 -4.1686 -3.7824 21 1 -2.0488 -3.1913 -3.1521 22 1 -0.7849 -3.7135 -5.1544 23 1 -1.7827 -5.4984 -3.8502 24 8 2.2598 -3.5269 -0.5594 25 1 -0.3632 0.0041 1.0276 26 1 -0.3633 0.8879 -0.5174 27 1 -0.3633 -0.8920 -0.5102 28 1 1.6579 2.1325 -0.0004 29 1 5.3533 -0.0048 -0.0113 30 1 4.1193 -2.1348 -0.0021 31 1 0.4267 -2.1191 1.8725 32 1 1.9951 -2.9437 2.0478 33 1 -0.5627 -4.1552 0.8988 34 1 0.1631 -4.5350 2.4800 35 1 0.7550 -6.2311 0.7362 36 1 2.1909 -5.3910 1.3707 37 1 2.4092 -4.0723 -2.7749 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310437745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:31 Heat of formation + Delta-G solvation = -90.645172 kcal Electronic energy + Delta-G solvation = -20635.215309 eV Core-core repulsion = 17483.858045 eV Total energy + Delta-G solvation = -3151.357265 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.65846 -39.55038 -37.80602 -33.16096 -32.60716 -32.46537 -31.19726 -28.64121 -26.80454 -25.25214 -23.55060 -22.38553 -21.87045 -20.50595 -19.26964 -17.01209 -16.82666 -16.07400 -15.85118 -15.37593 -14.50137 -14.34719 -14.14866 -13.77804 -13.70497 -13.32261 -13.16514 -12.96144 -12.81051 -12.53898 -11.81332 -11.77005 -11.57625 -11.39219 -10.98963 -10.81824 -10.79706 -10.70485 -10.26399 -10.12357 -9.88971 -9.56046 -8.85386 -8.60727 -8.44374 -8.15308 -7.79418 -6.34811 -4.17080 1.46275 1.54741 3.38853 3.40267 3.59499 3.88006 4.48801 4.49976 4.75629 5.03881 5.09290 5.30476 5.41233 5.46353 5.60390 5.64569 5.70551 5.79691 5.86893 5.89954 6.05661 6.09457 6.24590 6.32723 6.34648 6.40409 6.44423 6.52319 6.64266 6.72960 6.82690 6.88450 6.92431 7.09803 7.24337 7.42953 7.99740 8.33201 8.71165 8.87031 9.64820 11.04032 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019672 B = 0.007093 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.975232 B = 3946.794141 C = 4400.305378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.053 4.053 3 C -0.159 4.159 4 C 0.085 3.915 5 F -0.148 7.148 6 C -0.164 4.164 7 C -0.062 4.062 8 C -0.071 4.071 9 C 0.144 3.856 10 H 0.083 0.917 11 C -0.134 4.134 12 C -0.108 4.108 13 C -0.135 4.135 14 C 0.195 3.805 15 H 0.054 0.946 16 C -0.636 4.636 17 H 0.051 0.949 18 C 0.035 3.965 19 N -0.889 5.889 20 Si 1.058 2.942 21 H -0.288 1.288 22 H -0.282 1.282 23 H -0.288 1.288 24 O -0.388 6.388 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.040 0.960 37 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 6.704 8.227 10.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.054 4.054 3 C -0.178 4.178 4 C 0.066 3.934 5 F -0.127 7.127 6 C -0.183 4.183 7 C -0.080 4.080 8 C -0.071 4.071 9 C 0.086 3.914 10 H 0.101 0.899 11 C -0.172 4.172 12 C -0.145 4.145 13 C -0.173 4.173 14 C 0.140 3.860 15 H 0.072 0.928 16 C -0.673 4.673 17 H 0.069 0.931 18 C -0.174 4.174 19 N -0.523 5.523 20 Si 0.886 3.114 21 H -0.214 1.214 22 H -0.207 1.207 23 H -0.214 1.214 24 O -0.308 6.308 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.156 0.844 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.556 7.156 6.660 9.791 hybrid contribution 0.494 -0.264 1.592 1.687 sum -0.061 6.891 8.252 10.751 Atomic orbital electron populations 1.20923 0.90715 1.03743 1.02409 1.19511 0.96349 0.91444 0.98060 1.20840 0.92096 0.98808 1.06033 1.17634 0.90143 0.81041 1.04591 1.91445 1.80437 1.46568 1.94268 1.21103 1.00467 0.91351 1.05359 1.20937 0.93882 0.97512 0.95646 1.19940 0.93956 0.94538 0.98651 1.20397 0.94076 0.84543 0.92399 0.89937 1.22062 0.99991 0.97559 0.97605 1.21442 0.99740 0.94670 0.98697 1.22042 0.97935 0.98265 0.99021 1.19876 0.93938 0.81544 0.90609 0.92820 1.22290 0.93513 1.52723 0.98813 0.93120 1.25697 1.02890 0.93097 0.95745 1.70645 0.99248 1.41834 1.40556 0.83721 0.74631 0.76549 0.76492 1.21416 1.20744 1.21422 1.87808 1.41824 1.19319 1.81870 0.90988 0.91582 0.89937 0.85249 0.85298 0.84366 0.92428 0.92604 0.91094 0.93841 0.92459 0.94120 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.43 36.01 0.34 -1.40 16 2 C -0.05 -0.88 5.88 -104.63 -0.62 -1.50 16 3 C -0.16 -2.44 9.68 -39.51 -0.38 -2.83 16 4 C 0.08 1.36 7.30 -39.42 -0.29 1.07 16 5 F -0.15 -2.31 17.27 2.25 0.04 -2.27 16 6 C -0.16 -2.62 10.03 -39.51 -0.40 -3.02 16 7 C -0.06 -1.10 9.35 -39.59 -0.37 -1.47 16 8 C -0.07 -1.32 5.07 -104.62 -0.53 -1.85 16 9 C 0.14 2.95 2.09 -27.83 -0.06 2.89 16 10 H 0.08 1.89 5.09 -51.93 -0.26 1.63 16 11 C -0.13 -2.39 5.40 -26.59 -0.14 -2.53 16 12 C -0.11 -1.97 5.78 -26.55 -0.15 -2.13 16 13 C -0.13 -2.72 5.59 -26.59 -0.15 -2.87 16 14 C 0.20 4.71 2.76 -27.83 -0.08 4.63 16 15 H 0.05 1.39 8.00 -51.93 -0.42 0.98 16 16 C -0.64 -16.59 6.59 -34.44 -0.23 -16.82 16 17 H 0.05 1.32 6.87 -52.49 -0.36 0.95 16 18 C 0.03 0.95 5.40 -17.82 -0.10 0.86 16 19 N -0.89 -25.99 13.53 55.43 0.75 -25.24 16 20 Si 1.06 24.22 29.90 -169.99 -5.08 19.14 16 21 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 24 O -0.39 -9.16 7.77 -35.23 -0.27 -9.43 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 27 H 0.08 1.34 6.02 -51.93 -0.31 1.03 16 28 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.14 2.49 7.35 -52.48 -0.39 2.11 16 31 H 0.06 0.90 7.96 -51.93 -0.41 0.49 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.38 6.85 -51.93 -0.36 1.02 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.28 8.39 6.48 -40.82 -0.26 8.13 16 LS Contribution 299.67 15.07 4.52 4.52 Total: -1.00 -28.43 299.67 -8.15 -36.58 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -4.95 Total: 3.68 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -3.15 Total: -26.97 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.75 Total: -25.24 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.27 Total: -9.43 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -5.08 Total: 19.14 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.43 -8.15 -36.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310437745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.069 kcal (2) G-P(sol) polarization free energy of solvation -28.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds