Wall clock time and date at job start Mon Mar 30 2020 06:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38220 * 119.98940 * 2 1 4 4 C 1.38437 * 119.97642 * 180.28103 * 3 2 1 5 5 F 1.35094 * 120.02968 * 179.77016 * 4 3 2 6 6 C 1.38481 * 119.94623 * 359.73886 * 4 3 2 7 7 C 1.38179 * 119.97474 * 0.02562 * 6 4 3 8 8 C 1.38226 * 119.98654 * 179.77262 * 2 1 3 9 9 C 1.50704 * 119.97324 * 359.97438 * 8 2 1 10 10 H 1.08998 * 109.48982 * 34.75408 * 9 8 2 11 11 C 1.53098 * 109.47884 * 274.72765 * 9 8 2 12 12 C 1.53174 * 109.15827 * 182.40911 * 11 9 8 13 13 C 1.53178 * 109.03798 * 56.98297 * 12 11 9 14 14 C 1.53098 * 109.15976 * 303.01519 * 13 12 11 15 15 H 1.09001 * 109.47663 * 177.60127 * 14 13 12 16 16 C 1.50696 * 109.47990 * 297.62607 * 14 13 12 17 17 H 1.07999 * 120.00202 * 359.97438 * 16 14 13 18 18 C 1.37884 * 119.99746 * 180.02562 * 16 14 13 19 19 N 1.31514 * 119.99573 * 0.27650 * 18 16 14 20 20 Si 1.86800 * 119.99781 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47035 * 60.00183 * 20 18 16 22 22 H 1.48503 * 109.46845 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47237 * 299.99939 * 20 18 16 24 24 O 1.42896 * 109.47909 * 154.78570 * 9 8 2 25 25 H 1.08994 * 109.46424 * 270.23110 * 1 2 3 26 26 H 1.08996 * 109.47105 * 30.23227 * 1 2 3 27 27 H 1.08995 * 109.47044 * 150.23105 * 1 2 3 28 28 H 1.08001 * 120.01078 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.01526 * 179.97438 * 6 4 3 30 30 H 1.08003 * 119.98544 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.52293 * 62.50210 * 11 9 8 32 32 H 1.09002 * 109.57042 * 302.34579 * 11 9 8 33 33 H 1.09000 * 109.54841 * 297.11161 * 12 11 9 34 34 H 1.09000 * 109.61434 * 176.88817 * 12 11 9 35 35 H 1.09003 * 109.52191 * 183.11108 * 13 12 11 36 36 H 1.08999 * 109.57507 * 62.95216 * 13 12 11 37 37 H 0.97001 * 120.00651 * 359.71956 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1971 0.0000 4 6 3.5823 1.1968 -0.0059 5 9 4.2586 2.3663 -0.0106 6 6 4.2733 -0.0032 -0.0063 7 6 3.5805 -1.1988 -0.0014 8 6 2.1979 -1.1972 0.0048 9 6 1.4435 -2.5018 0.0105 10 1 0.5304 -2.3965 -0.5753 11 6 1.0855 -2.8782 1.4507 12 6 0.3724 -4.2338 1.4535 13 6 1.2769 -5.2756 0.7882 14 6 1.6275 -4.8066 -0.6264 15 1 2.3055 -5.5235 -1.0894 16 6 0.3684 -4.7027 -1.4479 17 1 -0.5864 -4.9469 -1.0061 18 6 0.4354 -4.2967 -2.7639 19 7 1.5988 -4.0054 -3.3037 20 14 -1.1252 -4.1686 -3.7824 21 1 -2.0488 -3.1913 -3.1521 22 1 -0.7849 -3.7135 -5.1544 23 1 -1.7827 -5.4984 -3.8502 24 8 2.2598 -3.5269 -0.5594 25 1 -0.3632 0.0041 1.0276 26 1 -0.3633 0.8879 -0.5174 27 1 -0.3633 -0.8920 -0.5102 28 1 1.6579 2.1325 -0.0004 29 1 5.3533 -0.0048 -0.0113 30 1 4.1193 -2.1348 -0.0021 31 1 0.4267 -2.1191 1.8725 32 1 1.9951 -2.9437 2.0478 33 1 -0.5627 -4.1552 0.8988 34 1 0.1631 -4.5350 2.4800 35 1 0.7550 -6.2311 0.7362 36 1 2.1909 -5.3910 1.3707 37 1 2.4092 -4.0723 -2.7749 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310437745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:31 Heat of formation + Delta-G solvation = -104.525865 kcal Electronic energy + Delta-G solvation = -20635.817221 eV Core-core repulsion = 17483.858045 eV Total energy + Delta-G solvation = -3151.959177 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.90117 -41.00514 -39.36830 -34.93289 -34.27219 -33.86853 -32.77365 -30.15320 -28.04346 -27.11699 -25.15531 -24.09391 -23.19086 -21.87990 -20.99007 -18.70353 -18.21351 -17.56225 -17.31935 -16.62033 -16.18503 -15.86405 -15.83466 -15.44333 -15.23990 -14.69240 -14.64631 -14.26459 -14.18309 -13.90500 -13.50324 -13.21066 -13.00386 -12.80682 -12.63815 -12.54697 -12.39849 -11.99856 -11.95179 -11.78392 -11.51424 -11.22837 -10.66569 -10.45404 -9.88875 -9.79335 -9.35112 -8.50309 -6.32443 0.14971 0.26687 1.52943 1.59222 1.78044 2.56321 2.58925 3.09537 3.23916 3.40472 3.78650 3.84965 3.92910 4.13664 4.17551 4.21999 4.32742 4.40948 4.49583 4.66363 4.67790 4.77002 4.82137 4.89780 4.90803 5.06511 5.12001 5.13850 5.18488 5.25734 5.31308 5.35142 5.44782 5.53489 5.72835 5.95019 6.00195 6.24130 6.65551 6.93080 7.57507 8.86579 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019672 B = 0.007093 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.975232 B = 3946.794141 C = 4400.305378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.058 4.058 3 C -0.152 4.152 4 C 0.083 3.917 5 F -0.144 7.144 6 C -0.163 4.163 7 C -0.078 4.078 8 C -0.096 4.096 9 C 0.144 3.856 10 H 0.055 0.945 11 C -0.128 4.128 12 C -0.104 4.104 13 C -0.130 4.130 14 C 0.189 3.811 15 H 0.021 0.979 16 C -0.631 4.631 17 H 0.051 0.949 18 C -0.014 4.014 19 N -0.921 5.921 20 Si 1.099 2.901 21 H -0.267 1.267 22 H -0.291 1.291 23 H -0.271 1.271 24 O -0.406 6.406 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.160 0.840 29 H 0.149 0.851 30 H 0.125 0.875 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.549 8.221 9.646 12.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.058 4.058 3 C -0.171 4.171 4 C 0.063 3.937 5 F -0.123 7.123 6 C -0.182 4.182 7 C -0.096 4.096 8 C -0.096 4.096 9 C 0.087 3.913 10 H 0.073 0.927 11 C -0.165 4.165 12 C -0.142 4.142 13 C -0.168 4.168 14 C 0.134 3.866 15 H 0.039 0.961 16 C -0.668 4.668 17 H 0.070 0.930 18 C -0.216 4.216 19 N -0.557 5.557 20 Si 0.922 3.078 21 H -0.192 1.192 22 H -0.216 1.216 23 H -0.197 1.197 24 O -0.326 6.326 25 H 0.114 0.886 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.177 0.823 29 H 0.167 0.833 30 H 0.143 0.857 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.897 8.666 8.108 12.018 hybrid contribution 0.965 -0.705 1.186 1.684 sum -0.932 7.961 9.294 12.273 Atomic orbital electron populations 1.20960 0.89133 1.03609 1.03888 1.19751 0.97588 0.90974 0.97466 1.21127 0.91955 0.99525 1.04472 1.17747 0.90597 0.81050 1.04258 1.91460 1.80414 1.46202 1.94190 1.21252 1.01555 0.90784 1.04568 1.20890 0.93875 0.97855 0.96957 1.19971 0.94368 0.94523 1.00732 1.20458 0.92795 0.84665 0.93431 0.92724 1.22016 1.00684 0.98002 0.95823 1.21428 0.98410 0.94245 1.00094 1.21954 0.99078 0.98962 0.96789 1.19786 0.92396 0.81709 0.92754 0.96140 1.22548 0.94191 1.51141 0.98962 0.93049 1.26991 1.04553 0.92510 0.97544 1.70769 0.99509 1.44834 1.40605 0.83184 0.72059 0.77762 0.74789 1.19212 1.21646 1.19683 1.87746 1.42466 1.19654 1.82737 0.88638 0.89345 0.92348 0.82250 0.83309 0.85661 0.89873 0.92066 0.92489 0.90468 0.92215 0.92919 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 9.43 71.24 0.67 -2.48 16 2 C -0.06 -1.81 5.88 -19.87 -0.12 -1.92 16 3 C -0.15 -4.27 9.68 22.31 0.22 -4.05 16 4 C 0.08 2.46 7.30 22.38 0.16 2.62 16 5 F -0.14 -4.11 17.27 44.97 0.78 -3.33 16 6 C -0.16 -5.04 10.03 22.31 0.22 -4.82 16 7 C -0.08 -2.79 9.35 22.26 0.21 -2.58 16 8 C -0.10 -3.55 5.07 -19.86 -0.10 -3.66 16 9 C 0.14 5.95 2.09 29.88 0.06 6.01 16 10 H 0.06 2.56 5.09 -2.39 -0.01 2.54 16 11 C -0.13 -4.33 5.40 30.69 0.17 -4.17 16 12 C -0.10 -3.62 5.78 30.71 0.18 -3.45 16 13 C -0.13 -5.19 5.59 30.69 0.17 -5.02 16 14 C 0.19 9.40 2.76 29.88 0.08 9.48 16 15 H 0.02 1.14 8.00 -2.39 -0.02 1.12 16 16 C -0.63 -33.50 6.59 25.60 0.17 -33.33 16 17 H 0.05 2.67 6.87 -2.91 -0.02 2.65 16 18 C -0.01 -0.75 5.40 84.66 0.46 -0.29 16 19 N -0.92 -55.83 13.53 21.45 0.29 -55.54 16 20 Si 1.10 48.89 29.90 68.60 2.05 50.94 16 21 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 24 O -0.41 -19.81 7.77 -148.98 -1.16 -20.97 16 25 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.09 1.91 8.09 -2.39 -0.02 1.89 16 27 H 0.06 1.84 6.02 -2.39 -0.01 1.83 16 28 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 29 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.13 4.72 7.35 -2.91 -0.02 4.70 16 31 H 0.08 2.39 7.96 -2.39 -0.02 2.37 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 2.13 6.85 -2.39 -0.02 2.12 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.27 16.68 6.48 -92.71 -0.60 16.08 16 Total: -1.00 -62.62 299.67 5.75 -56.87 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 1.23 Total: 19.69 kcal Atomic # 6 Polarization: -50.21 SS G_CDS: 2.55 Total: -47.66 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.29 Total: -55.54 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -1.16 Total: -20.97 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.78 Total: -3.33 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.05 Total: 50.94 kcal Total: -62.62 5.75 -56.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310437745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.654 kcal (2) G-P(sol) polarization free energy of solvation -62.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds