Wall clock time and date at job start Mon Mar 30 2020 06:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38221 * 119.98512 * 2 1 4 4 C 1.38436 * 119.96852 * 179.97438 * 3 2 1 5 5 F 1.35104 * 120.02377 * 180.02562 * 4 3 2 6 6 C 1.38473 * 119.95521 * 359.97438 * 4 3 2 7 7 C 1.38177 * 119.97159 * 359.70652 * 6 4 3 8 8 C 1.38219 * 119.98676 * 179.97438 * 2 1 3 9 9 C 1.50700 * 119.97470 * 0.02562 * 8 2 1 10 10 H 1.08999 * 109.48366 * 324.97737 * 9 8 2 11 11 C 1.53098 * 109.47718 * 85.00061 * 9 8 2 12 12 C 1.53177 * 109.21356 * 177.56941 * 11 9 8 13 13 C 1.53180 * 109.03525 * 303.11207 * 12 11 9 14 14 C 1.53097 * 109.21119 * 56.88485 * 13 12 11 15 15 H 1.09008 * 109.48729 * 182.43222 * 14 13 12 16 16 C 1.50701 * 109.47889 * 62.40895 * 14 13 12 17 17 H 1.08001 * 120.00166 * 0.05894 * 16 14 13 18 18 C 1.37873 * 119.99864 * 180.02562 * 16 14 13 19 19 N 1.31522 * 120.00114 * 180.02562 * 18 16 14 20 20 Si 1.86800 * 120.00178 * 359.97438 * 18 16 14 21 21 H 1.48502 * 109.46948 * 89.99892 * 20 18 16 22 22 H 1.48503 * 109.47313 * 210.00032 * 20 18 16 23 23 H 1.48497 * 109.47025 * 330.00114 * 20 18 16 24 24 O 1.42898 * 109.41405 * 302.42599 * 14 13 12 25 25 H 1.08993 * 109.47682 * 270.02475 * 1 2 3 26 26 H 1.09001 * 109.47209 * 30.03003 * 1 2 3 27 27 H 1.09005 * 109.46905 * 150.01886 * 1 2 3 28 28 H 1.07999 * 120.01625 * 359.97438 * 3 2 1 29 29 H 1.08004 * 120.01974 * 179.97438 * 6 4 3 30 30 H 1.08007 * 119.98678 * 180.29360 * 7 6 4 31 31 H 1.09002 * 109.52244 * 297.50880 * 11 9 8 32 32 H 1.09004 * 109.52508 * 57.63408 * 11 9 8 33 33 H 1.09005 * 109.54330 * 62.92184 * 12 11 9 34 34 H 1.09005 * 109.54560 * 183.18386 * 12 11 9 35 35 H 1.08992 * 109.47198 * 296.98281 * 13 12 11 36 36 H 1.09005 * 109.58122 * 176.85328 * 13 12 11 37 37 H 0.97001 * 119.99895 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1972 0.0000 4 6 3.5822 1.1968 0.0005 5 9 4.2585 2.3664 0.0011 6 6 4.2732 -0.0032 0.0016 7 6 3.5805 -1.1987 0.0083 8 6 2.1978 -1.1972 0.0005 9 6 1.4435 -2.5018 0.0005 10 1 0.5328 -2.3951 0.5899 11 6 1.0796 -2.8810 -1.4374 12 6 0.3668 -4.2369 -1.4361 13 6 1.2733 -5.2772 -0.7709 14 6 1.6297 -4.8053 0.6413 15 1 2.3095 -5.5214 1.1032 16 6 0.3739 -4.6995 1.4677 17 1 -0.5826 -4.9450 1.0304 18 6 0.4462 -4.2899 2.7822 19 7 -0.6497 -4.1980 3.5036 20 14 2.1008 -3.8668 3.5390 21 1 2.3847 -2.4237 3.3333 22 1 2.0699 -4.1627 4.9939 23 1 3.1631 -4.6775 2.8915 24 8 2.2619 -3.5259 0.5692 25 1 -0.3634 0.0004 1.0276 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5136 28 1 1.6578 2.1325 -0.0004 29 1 5.3533 -0.0047 0.0016 30 1 4.1193 -2.1348 0.0139 31 1 0.4192 -2.1227 -1.8581 32 1 1.9872 -2.9472 -2.0375 33 1 -0.5664 -4.1577 -0.8785 34 1 0.1556 -4.5388 -2.4620 35 1 2.1848 -5.3928 -1.3571 36 1 0.7524 -6.2331 -0.7149 37 1 -0.5987 -3.9102 4.4285 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310437747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:34 Heat of formation + Delta-G solvation = -82.597629 kcal Electronic energy + Delta-G solvation = -20688.510800 eV Core-core repulsion = 17537.502503 eV Total energy + Delta-G solvation = -3151.008297 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.72268 -39.65822 -37.90826 -33.09873 -32.74430 -32.42907 -31.51531 -28.91774 -26.88991 -25.90161 -23.72541 -22.18314 -21.95043 -20.57863 -18.92589 -17.03563 -16.99637 -16.17494 -15.89216 -15.44229 -14.82496 -14.51420 -14.17118 -13.89268 -13.66277 -13.37669 -13.06011 -13.01652 -12.71623 -12.55516 -12.31507 -11.92522 -11.69276 -11.47530 -11.27445 -10.83845 -10.76138 -10.53009 -10.35937 -10.07617 -9.85676 -9.71436 -8.92340 -8.68692 -8.67739 -8.39790 -7.95984 -6.16280 -4.25673 1.37782 1.46951 3.41398 3.45973 3.56305 3.79376 4.42990 4.46118 4.62561 4.95787 5.02479 5.18952 5.31428 5.37557 5.57170 5.60805 5.67915 5.75561 5.81745 5.90091 6.01781 6.04353 6.16748 6.28314 6.29037 6.33514 6.41648 6.50529 6.55020 6.70056 6.75808 6.81511 6.88274 7.01874 7.15827 7.29352 7.58693 8.15060 8.59269 8.85613 9.47466 10.93592 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019619 B = 0.007773 C = 0.006936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.841382 B = 3601.534051 C = 4035.670951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.050 4.050 3 C -0.159 4.159 4 C 0.086 3.914 5 F -0.148 7.148 6 C -0.165 4.165 7 C -0.066 4.066 8 C -0.076 4.076 9 C 0.137 3.863 10 H 0.089 0.911 11 C -0.133 4.133 12 C -0.111 4.111 13 C -0.131 4.131 14 C 0.172 3.828 15 H 0.066 0.934 16 C -0.548 4.548 17 H 0.077 0.923 18 C 0.084 3.916 19 N -0.891 5.891 20 Si 0.897 3.103 21 H -0.275 1.275 22 H -0.304 1.304 23 H -0.265 1.265 24 O -0.395 6.395 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.140 0.860 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.864 7.289 -8.737 12.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.051 4.051 3 C -0.178 4.178 4 C 0.067 3.933 5 F -0.126 7.126 6 C -0.184 4.184 7 C -0.084 4.084 8 C -0.076 4.076 9 C 0.079 3.921 10 H 0.106 0.894 11 C -0.171 4.171 12 C -0.148 4.148 13 C -0.169 4.169 14 C 0.117 3.883 15 H 0.084 0.916 16 C -0.585 4.585 17 H 0.095 0.905 18 C -0.120 4.120 19 N -0.528 5.528 20 Si 0.726 3.274 21 H -0.200 1.200 22 H -0.232 1.232 23 H -0.190 1.190 24 O -0.315 6.315 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.157 0.843 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.998 7.399 -8.517 12.339 hybrid contribution 0.732 0.437 0.517 0.997 sum 5.730 7.836 -8.000 12.579 Atomic orbital electron populations 1.20932 0.90416 1.03113 1.03372 1.19555 0.96514 0.91376 0.97612 1.20867 0.92091 0.98891 1.05920 1.17649 0.90161 0.81060 1.04403 1.91454 1.80421 1.46532 1.94234 1.21104 1.00501 0.91346 1.05444 1.20964 0.93893 0.97606 0.95942 1.19965 0.93956 0.94556 0.99112 1.20497 0.94170 0.84236 0.93189 0.89351 1.22059 1.00155 0.97782 0.97106 1.21474 0.99918 0.94427 0.99009 1.21970 0.98177 0.98570 0.98171 1.20305 0.94250 0.81598 0.92144 0.91612 1.21436 0.93753 1.47227 0.96107 0.90490 1.25001 0.96679 0.93462 0.96898 1.69951 1.27932 1.46022 1.08888 0.86479 0.84570 0.80041 0.76306 1.20046 1.23224 1.18988 1.87730 1.42493 1.19716 1.81605 0.90288 0.91608 0.90261 0.85104 0.85231 0.84269 0.92120 0.92394 0.90696 0.93545 0.93788 0.91953 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 9.22 36.01 0.33 -1.39 16 2 C -0.05 -0.81 5.88 -104.63 -0.62 -1.42 16 3 C -0.16 -2.36 9.68 -39.51 -0.38 -2.74 16 4 C 0.09 1.33 7.30 -39.42 -0.29 1.04 16 5 F -0.15 -2.21 17.27 2.25 0.04 -2.18 16 6 C -0.17 -2.52 10.03 -39.52 -0.40 -2.92 16 7 C -0.07 -1.12 9.35 -39.59 -0.37 -1.49 16 8 C -0.08 -1.36 5.07 -104.62 -0.53 -1.89 16 9 C 0.14 2.69 1.89 -27.83 -0.05 2.64 16 10 H 0.09 1.97 5.93 -51.93 -0.31 1.66 16 11 C -0.13 -2.25 5.22 -26.59 -0.14 -2.39 16 12 C -0.11 -1.94 5.78 -26.55 -0.15 -2.10 16 13 C -0.13 -2.49 5.59 -26.59 -0.15 -2.64 16 14 C 0.17 3.91 2.64 -27.83 -0.07 3.83 16 15 H 0.07 1.53 7.20 -51.92 -0.37 1.16 16 16 C -0.55 -14.38 7.17 -34.44 -0.25 -14.63 16 17 H 0.08 2.17 7.12 -52.49 -0.37 1.79 16 18 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 19 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 20 Si 0.90 22.59 26.18 -169.99 -4.45 18.14 16 21 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.30 -7.70 7.11 56.52 0.40 -7.29 16 23 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 24 O -0.39 -8.71 6.77 -35.23 -0.24 -8.95 16 25 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 27 H 0.08 1.14 5.40 -51.93 -0.28 0.86 16 28 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 29 H 0.13 1.67 8.06 -52.48 -0.42 1.24 16 30 H 0.14 2.34 7.34 -52.48 -0.39 1.95 16 31 H 0.06 0.91 6.87 -51.93 -0.36 0.55 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.45 6.86 -51.93 -0.36 1.09 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 295.16 15.07 4.45 4.45 Total: -1.00 -28.76 295.16 -7.57 -36.33 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.98 Total: 1.46 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -3.16 Total: -23.86 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.77 Total: -25.39 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.24 Total: -8.95 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.45 Total: 18.14 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.76 -7.57 -36.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310437747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.265 kcal (2) G-P(sol) polarization free energy of solvation -28.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds