Wall clock time and date at job start Mon Mar 30 2020 06:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38221 * 119.98512 * 2 1 4 4 C 1.38436 * 119.96852 * 179.97438 * 3 2 1 5 5 F 1.35104 * 120.02377 * 180.02562 * 4 3 2 6 6 C 1.38473 * 119.95521 * 359.97438 * 4 3 2 7 7 C 1.38177 * 119.97159 * 359.70652 * 6 4 3 8 8 C 1.38219 * 119.98676 * 179.97438 * 2 1 3 9 9 C 1.50700 * 119.97470 * 0.02562 * 8 2 1 10 10 H 1.08999 * 109.48366 * 324.97737 * 9 8 2 11 11 C 1.53098 * 109.47718 * 85.00061 * 9 8 2 12 12 C 1.53177 * 109.21356 * 177.56941 * 11 9 8 13 13 C 1.53180 * 109.03525 * 303.11207 * 12 11 9 14 14 C 1.53097 * 109.21119 * 56.88485 * 13 12 11 15 15 H 1.09008 * 109.48729 * 182.43222 * 14 13 12 16 16 C 1.50701 * 109.47889 * 62.40895 * 14 13 12 17 17 H 1.08001 * 120.00166 * 0.05894 * 16 14 13 18 18 C 1.37873 * 119.99864 * 180.02562 * 16 14 13 19 19 N 1.31522 * 120.00114 * 180.02562 * 18 16 14 20 20 Si 1.86800 * 120.00178 * 359.97438 * 18 16 14 21 21 H 1.48502 * 109.46948 * 89.99892 * 20 18 16 22 22 H 1.48503 * 109.47313 * 210.00032 * 20 18 16 23 23 H 1.48497 * 109.47025 * 330.00114 * 20 18 16 24 24 O 1.42898 * 109.41405 * 302.42599 * 14 13 12 25 25 H 1.08993 * 109.47682 * 270.02475 * 1 2 3 26 26 H 1.09001 * 109.47209 * 30.03003 * 1 2 3 27 27 H 1.09005 * 109.46905 * 150.01886 * 1 2 3 28 28 H 1.07999 * 120.01625 * 359.97438 * 3 2 1 29 29 H 1.08004 * 120.01974 * 179.97438 * 6 4 3 30 30 H 1.08007 * 119.98678 * 180.29360 * 7 6 4 31 31 H 1.09002 * 109.52244 * 297.50880 * 11 9 8 32 32 H 1.09004 * 109.52508 * 57.63408 * 11 9 8 33 33 H 1.09005 * 109.54330 * 62.92184 * 12 11 9 34 34 H 1.09005 * 109.54560 * 183.18386 * 12 11 9 35 35 H 1.08992 * 109.47198 * 296.98281 * 13 12 11 36 36 H 1.09005 * 109.58122 * 176.85328 * 13 12 11 37 37 H 0.97001 * 119.99895 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1972 0.0000 4 6 3.5822 1.1968 0.0005 5 9 4.2585 2.3664 0.0011 6 6 4.2732 -0.0032 0.0016 7 6 3.5805 -1.1987 0.0083 8 6 2.1978 -1.1972 0.0005 9 6 1.4435 -2.5018 0.0005 10 1 0.5328 -2.3951 0.5899 11 6 1.0796 -2.8810 -1.4374 12 6 0.3668 -4.2369 -1.4361 13 6 1.2733 -5.2772 -0.7709 14 6 1.6297 -4.8053 0.6413 15 1 2.3095 -5.5214 1.1032 16 6 0.3739 -4.6995 1.4677 17 1 -0.5826 -4.9450 1.0304 18 6 0.4462 -4.2899 2.7822 19 7 -0.6497 -4.1980 3.5036 20 14 2.1008 -3.8668 3.5390 21 1 2.3847 -2.4237 3.3333 22 1 2.0699 -4.1627 4.9939 23 1 3.1631 -4.6775 2.8915 24 8 2.2619 -3.5259 0.5692 25 1 -0.3634 0.0004 1.0276 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5136 28 1 1.6578 2.1325 -0.0004 29 1 5.3533 -0.0047 0.0016 30 1 4.1193 -2.1348 0.0139 31 1 0.4192 -2.1227 -1.8581 32 1 1.9872 -2.9472 -2.0375 33 1 -0.5664 -4.1577 -0.8785 34 1 0.1556 -4.5388 -2.4620 35 1 2.1848 -5.3928 -1.3571 36 1 0.7524 -6.2331 -0.7149 37 1 -0.5987 -3.9102 4.4285 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310437747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:34 Heat of formation + Delta-G solvation = -97.514415 kcal Electronic energy + Delta-G solvation = -20689.157640 eV Core-core repulsion = 17537.502503 eV Total energy + Delta-G solvation = -3151.655138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.90222 -41.05268 -39.39120 -34.79059 -34.39199 -33.88526 -33.02615 -30.39434 -28.13487 -27.67284 -25.20776 -23.82196 -23.20809 -21.88127 -20.63512 -18.84579 -18.23204 -17.55677 -17.38518 -16.66541 -16.58478 -15.95440 -15.77221 -15.51185 -15.09244 -14.75779 -14.44433 -14.26707 -14.22136 -14.14154 -13.85624 -13.39298 -13.08235 -12.80900 -12.78607 -12.64613 -12.28364 -11.99543 -11.89856 -11.76289 -11.62615 -11.29670 -10.85784 -10.65618 -10.02845 -9.87475 -9.35862 -8.32887 -6.42207 0.12880 0.25842 1.36430 1.40985 1.51860 2.36898 2.54394 2.90964 3.23485 3.29757 3.77946 3.83984 3.93116 4.15102 4.21470 4.23672 4.37854 4.42074 4.49335 4.62870 4.71284 4.75434 4.82050 4.92219 4.92728 5.08260 5.12411 5.15680 5.24225 5.26842 5.30493 5.36036 5.43162 5.49882 5.67478 5.72176 5.93749 6.12162 6.67272 6.81370 7.33166 8.80610 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019619 B = 0.007773 C = 0.006936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.841382 B = 3601.534051 C = 4035.670951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.058 4.058 3 C -0.154 4.154 4 C 0.083 3.917 5 F -0.144 7.144 6 C -0.161 4.161 7 C -0.078 4.078 8 C -0.099 4.099 9 C 0.137 3.863 10 H 0.053 0.947 11 C -0.126 4.126 12 C -0.109 4.109 13 C -0.128 4.128 14 C 0.170 3.830 15 H 0.061 0.939 16 C -0.534 4.534 17 H 0.048 0.952 18 C 0.038 3.962 19 N -0.934 5.934 20 Si 0.946 3.054 21 H -0.282 1.282 22 H -0.306 1.306 23 H -0.253 1.253 24 O -0.402 6.402 25 H 0.066 0.934 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.157 0.843 29 H 0.153 0.847 30 H 0.137 0.863 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.316 8.443 -10.390 14.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.058 4.058 3 C -0.172 4.172 4 C 0.064 3.936 5 F -0.123 7.123 6 C -0.180 4.180 7 C -0.096 4.096 8 C -0.099 4.099 9 C 0.080 3.920 10 H 0.071 0.929 11 C -0.164 4.164 12 C -0.146 4.146 13 C -0.166 4.166 14 C 0.114 3.886 15 H 0.078 0.922 16 C -0.572 4.572 17 H 0.066 0.934 18 C -0.162 4.162 19 N -0.574 5.574 20 Si 0.774 3.226 21 H -0.208 1.208 22 H -0.234 1.234 23 H -0.177 1.177 24 O -0.323 6.323 25 H 0.085 0.915 26 H 0.116 0.884 27 H 0.090 0.910 28 H 0.175 0.825 29 H 0.171 0.829 30 H 0.155 0.845 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.461 8.546 -10.186 14.783 hybrid contribution 0.256 0.126 0.980 1.021 sum 6.717 8.672 -9.206 14.320 Atomic orbital electron populations 1.20946 0.89484 1.04334 1.02917 1.19734 0.97332 0.91219 0.97499 1.21125 0.92126 0.99456 1.04532 1.17781 0.90497 0.81219 1.04136 1.91467 1.80369 1.46283 1.94168 1.21301 1.01727 0.90660 1.04309 1.20995 0.93584 0.98284 0.96750 1.19971 0.94555 0.94242 1.01142 1.20513 0.92748 0.84620 0.94157 0.92866 1.22014 1.01046 0.97843 0.95464 1.21457 0.98368 0.94565 1.00253 1.21918 0.99592 0.98869 0.96178 1.20239 0.92263 0.82180 0.93926 0.92182 1.21661 0.94269 1.45140 0.96093 0.93370 1.25615 0.98891 0.94013 0.97684 1.70053 1.29639 1.48467 1.09277 0.85694 0.81989 0.79373 0.75531 1.20782 1.23435 1.17654 1.87667 1.42587 1.19773 1.82241 0.91546 0.88425 0.91036 0.82499 0.82905 0.84508 0.90174 0.90984 0.93385 0.90297 0.91368 0.91905 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.26 9.22 71.24 0.66 -2.60 16 2 C -0.06 -1.75 5.88 -19.87 -0.12 -1.87 16 3 C -0.15 -4.15 9.68 22.31 0.22 -3.94 16 4 C 0.08 2.31 7.30 22.37 0.16 2.48 16 5 F -0.14 -3.90 17.27 44.97 0.78 -3.12 16 6 C -0.16 -4.52 10.03 22.31 0.22 -4.30 16 7 C -0.08 -2.52 9.35 22.26 0.21 -2.31 16 8 C -0.10 -3.43 5.07 -19.86 -0.10 -3.53 16 9 C 0.14 5.32 1.89 29.88 0.06 5.37 16 10 H 0.05 2.43 5.93 -2.39 -0.01 2.42 16 11 C -0.13 -4.02 5.22 30.69 0.16 -3.86 16 12 C -0.11 -3.65 5.78 30.71 0.18 -3.47 16 13 C -0.13 -4.66 5.59 30.69 0.17 -4.49 16 14 C 0.17 7.62 2.64 29.88 0.08 7.70 16 15 H 0.06 2.76 7.20 -2.38 -0.02 2.74 16 16 C -0.53 -28.64 7.17 25.60 0.18 -28.46 16 17 H 0.05 2.82 7.12 -2.91 -0.02 2.80 16 18 C 0.04 2.15 5.47 84.65 0.46 2.61 16 19 N -0.93 -56.66 13.96 21.45 0.30 -56.36 16 20 Si 0.95 47.14 26.18 68.60 1.80 48.93 16 21 H -0.28 -14.24 7.11 99.48 0.71 -13.53 16 22 H -0.31 -15.21 7.11 99.48 0.71 -14.51 16 23 H -0.25 -11.94 6.54 99.48 0.65 -11.29 16 24 O -0.40 -17.45 6.77 -148.98 -1.01 -18.45 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.10 1.96 8.09 -2.39 -0.02 1.94 16 27 H 0.07 2.02 5.40 -2.38 -0.01 2.01 16 28 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 29 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 30 H 0.14 4.40 7.34 -2.91 -0.02 4.37 16 31 H 0.08 2.24 6.87 -2.39 -0.02 2.22 16 32 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.05 1.86 6.86 -2.38 -0.02 1.84 16 34 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 35 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 37 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -62.28 295.16 5.42 -56.86 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.01 Total: 12.80 kcal Atomic # 6 Polarization: -43.20 SS G_CDS: 2.54 Total: -40.66 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.30 Total: -56.36 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -1.01 Total: -18.45 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.78 Total: -3.12 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.80 Total: 48.93 kcal Total: -62.28 5.42 -56.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310437747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.655 kcal (2) G-P(sol) polarization free energy of solvation -62.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds