Wall clock time and date at job start Mon Mar 30 2020 07:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.48587 * 2 1 4 4 C 1.38220 * 120.01573 * 239.98537 * 3 2 1 5 5 C 1.38220 * 120.02221 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.05520 * 0.24487 * 5 4 3 7 7 C 1.38183 * 120.02761 * 359.49477 * 6 5 4 8 8 C 1.38437 * 120.00681 * 59.99730 * 3 2 1 9 9 F 1.35095 * 120.02946 * 359.96094 * 8 3 2 10 10 C 1.53100 * 109.49290 * 120.03043 * 2 1 3 11 11 C 1.53180 * 109.15910 * 62.37872 * 10 2 1 12 12 C 1.53180 * 109.03915 * 56.98412 * 11 10 2 13 13 C 1.53092 * 109.15820 * 303.01470 * 12 11 10 14 14 H 1.09000 * 109.47857 * 177.58995 * 13 12 11 15 15 C 1.50702 * 109.49387 * 297.61868 * 13 12 11 16 16 H 1.07999 * 119.99922 * 5.59862 * 15 13 12 17 17 C 1.37870 * 119.99927 * 185.58954 * 15 13 12 18 18 N 1.31516 * 120.00024 * 180.02562 * 17 15 13 19 19 Si 1.86805 * 120.00407 * 0.02562 * 17 15 13 20 20 H 1.48498 * 109.47386 * 89.99346 * 19 17 15 21 21 H 1.48497 * 109.47140 * 209.99795 * 19 17 15 22 22 H 1.48500 * 109.46687 * 329.99610 * 19 17 15 23 23 O 1.42900 * 109.41468 * 57.61439 * 13 12 11 24 24 H 1.08999 * 109.47409 * 77.54410 * 1 2 3 25 25 H 1.09001 * 109.46795 * 197.54857 * 1 2 3 26 26 H 1.09001 * 109.46821 * 317.54181 * 1 2 3 27 27 H 1.08000 * 119.98473 * 0.03147 * 4 3 2 28 28 H 1.08002 * 119.96804 * 179.97438 * 5 4 3 29 29 H 1.08006 * 119.98862 * 179.75059 * 6 5 4 30 30 H 1.07998 * 120.01668 * 180.27001 * 7 6 5 31 31 H 1.08999 * 109.52231 * 182.28390 * 10 2 1 32 32 H 1.08999 * 109.51725 * 302.47427 * 10 2 1 33 33 H 1.09000 * 109.54349 * 297.11203 * 11 10 2 34 34 H 1.09004 * 109.61507 * 176.89228 * 11 10 2 35 35 H 1.08998 * 109.51675 * 183.11480 * 12 11 10 36 36 H 1.08988 * 109.51974 * 62.92041 * 12 11 10 37 37 H 0.96999 * 120.00196 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0327 1.4207 0.0000 4 6 2.8277 1.8728 -1.0363 5 6 3.2893 3.1757 -1.0362 6 6 2.9606 4.0266 0.0028 7 6 2.1615 3.5785 1.0372 8 6 1.6985 2.2733 1.0382 9 9 0.9210 1.8327 2.0513 10 6 2.0408 -0.7223 1.2495 11 6 1.5762 -2.1814 1.2120 12 6 2.0769 -2.8322 -0.0812 13 6 1.5646 -2.0284 -1.2792 14 1 1.9531 -2.4620 -2.2007 15 6 0.0582 -2.0653 -1.3024 16 1 -0.4831 -2.5299 -0.4915 17 6 -0.6288 -1.5059 -2.3588 18 7 -1.9434 -1.5377 -2.3789 19 14 0.3075 -0.7028 -3.7616 20 1 0.5957 -1.7159 -4.8084 21 1 -0.5130 0.3900 -4.3428 22 1 1.5842 -0.1441 -3.2487 23 8 2.0065 -0.6741 -1.1665 24 1 -0.3634 0.2216 -1.0034 25 1 -0.3633 -0.9799 0.3099 26 1 -0.3633 0.7582 0.6937 27 1 3.0882 1.2078 -1.8465 28 1 3.9108 3.5279 -1.8462 29 1 3.3252 5.0433 0.0038 30 1 1.9013 4.2446 1.8465 31 1 3.1301 -0.6873 1.2707 32 1 1.6424 -0.2358 2.1398 33 1 0.4872 -2.2182 1.2408 34 1 1.9819 -2.7168 2.0704 35 1 1.7042 -3.8546 -0.1423 36 1 3.1668 -2.8398 -0.0867 37 1 -2.4268 -1.1445 -3.1222 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310446399.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:59 Heat of formation + Delta-G solvation = -54.145018 kcal Electronic energy + Delta-G solvation = -21463.120719 eV Core-core repulsion = 18313.346220 eV Total energy + Delta-G solvation = -3149.774499 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.59575 -39.62892 -38.07485 -33.07466 -32.73904 -32.24765 -30.30058 -29.07301 -27.88284 -24.63296 -23.52349 -22.56354 -21.82542 -20.55602 -18.41594 -17.44073 -16.76162 -16.01610 -15.78424 -15.27362 -14.96355 -14.40151 -14.13684 -13.78477 -13.67959 -13.41440 -12.80606 -12.60549 -12.50645 -12.12950 -11.94288 -11.78764 -11.54126 -11.40627 -10.88176 -10.66258 -10.53983 -10.28807 -10.05418 -9.87381 -9.73830 -9.43986 -8.84288 -8.67000 -8.44981 -8.29219 -7.94771 -6.12305 -4.07088 1.43628 1.51355 3.33820 3.44068 3.63037 3.88284 4.47465 4.50251 4.69918 5.00033 5.16885 5.19745 5.35826 5.52257 5.64213 5.67039 5.75114 5.90149 6.06074 6.15163 6.18379 6.32922 6.37120 6.44257 6.52332 6.57632 6.65034 6.72644 6.77044 6.82703 6.93989 7.00623 7.18342 7.27587 7.35765 7.63144 7.89448 8.23973 8.65219 8.85792 9.51130 10.97767 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019841 B = 0.009590 C = 0.008156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.915306 B = 2919.143519 C = 3432.281461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.171 3.829 3 C -0.090 4.090 4 C -0.073 4.073 5 C -0.137 4.137 6 C -0.106 4.106 7 C -0.161 4.161 8 C 0.102 3.898 9 F -0.135 7.135 10 C -0.134 4.134 11 C -0.112 4.112 12 C -0.131 4.131 13 C 0.175 3.825 14 H 0.062 0.938 15 C -0.539 4.539 16 H 0.079 0.921 17 C 0.083 3.917 18 N -0.888 5.888 19 Si 0.859 3.141 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.228 1.228 23 O -0.387 6.387 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.019 0.981 27 H 0.142 0.858 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.473 7.478 5.184 13.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.131 3.869 3 C -0.091 4.091 4 C -0.091 4.091 5 C -0.155 4.155 6 C -0.124 4.124 7 C -0.180 4.180 8 C 0.082 3.918 9 F -0.114 7.114 10 C -0.172 4.172 11 C -0.149 4.149 12 C -0.169 4.169 13 C 0.119 3.881 14 H 0.079 0.921 15 C -0.576 4.576 16 H 0.097 0.903 17 C -0.120 4.120 18 N -0.525 5.525 19 Si 0.686 3.314 20 H -0.212 1.212 21 H -0.220 1.220 22 H -0.150 1.150 23 O -0.308 6.308 24 H 0.088 0.912 25 H 0.119 0.881 26 H 0.038 0.962 27 H 0.160 0.840 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.411 7.590 5.000 13.084 hybrid contribution -0.046 0.271 -0.507 0.577 sum 9.364 7.862 4.492 13.026 Atomic orbital electron populations 1.22912 0.92627 1.03004 1.02194 1.19707 0.94767 0.85880 0.86545 1.20122 0.98435 0.96427 0.94071 1.21104 0.94795 0.95402 0.97792 1.21209 1.01354 0.94060 0.98910 1.20886 0.98021 0.99659 0.93842 1.21007 1.01581 0.94290 1.01128 1.17456 0.94626 0.92999 0.86694 1.91448 1.72349 1.89723 1.57831 1.22114 0.99974 0.96954 0.98126 1.21517 1.02193 0.94381 0.96795 1.21976 0.98460 0.99823 0.96664 1.20146 0.95086 0.79076 0.93760 0.92062 1.21301 0.89532 1.38926 1.07841 0.90316 1.24882 0.94532 0.94789 0.97830 1.69931 1.06561 1.44243 1.31796 0.87145 0.82799 0.79600 0.81883 1.21204 1.21953 1.15034 1.87911 1.74031 1.27795 1.41020 0.91184 0.88096 0.96236 0.84045 0.85832 0.85675 0.85232 0.92752 0.91624 0.90456 0.93616 0.91930 0.93844 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 6.86 37.16 0.25 -3.22 16 2 C 0.17 3.56 0.83 -91.72 -0.08 3.48 16 3 C -0.09 -1.69 4.79 -104.56 -0.50 -2.20 16 4 C -0.07 -1.27 9.38 -39.59 -0.37 -1.64 16 5 C -0.14 -1.92 10.04 -39.58 -0.40 -2.32 16 6 C -0.11 -1.36 10.04 -39.59 -0.40 -1.75 16 7 C -0.16 -2.29 10.03 -39.51 -0.40 -2.68 16 8 C 0.10 1.76 6.66 -39.42 -0.26 1.49 16 9 F -0.14 -2.41 13.47 2.25 0.03 -2.38 16 10 C -0.13 -2.52 4.67 -26.59 -0.12 -2.64 16 11 C -0.11 -2.09 5.62 -26.54 -0.15 -2.24 16 12 C -0.13 -2.57 5.60 -26.59 -0.15 -2.72 16 13 C 0.17 3.97 2.63 -27.83 -0.07 3.90 16 14 H 0.06 1.40 7.26 -51.93 -0.38 1.03 16 15 C -0.54 -13.94 5.28 -34.44 -0.18 -14.12 16 16 H 0.08 2.20 6.28 -52.49 -0.33 1.87 16 17 C 0.08 2.27 3.63 -17.82 -0.06 2.21 16 18 N -0.89 -25.83 13.96 55.43 0.77 -25.06 16 19 Si 0.86 21.10 26.29 -169.99 -4.47 16.63 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 22 H -0.23 -5.37 5.62 56.52 0.32 -5.05 16 23 O -0.39 -8.67 6.07 -35.23 -0.21 -8.88 16 24 H 0.07 1.81 5.25 -51.93 -0.27 1.53 16 25 H 0.10 2.47 3.48 -51.93 -0.18 2.29 16 26 H 0.02 0.42 6.01 -51.93 -0.31 0.11 16 27 H 0.14 2.57 7.01 -52.49 -0.37 2.21 16 28 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 30 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.19 6.39 -51.93 -0.33 0.85 16 33 H 0.08 1.58 5.32 -51.93 -0.28 1.30 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.04 0.78 8.14 -51.94 -0.42 0.36 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 277.74 15.07 4.19 4.19 Total: -1.00 -28.33 277.74 -7.21 -35.54 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.63 Total: 4.42 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -2.89 Total: -24.45 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.77 Total: -25.06 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.21 Total: -8.88 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.03 Total: -2.38 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.47 Total: 16.63 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.33 -7.21 -35.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310446399.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.602 kcal (2) G-P(sol) polarization free energy of solvation -28.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds