Wall clock time and date at job start Mon Mar 30 2020 07:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.48587 * 2 1 4 4 C 1.38220 * 120.01573 * 239.98537 * 3 2 1 5 5 C 1.38220 * 120.02221 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.05520 * 0.24487 * 5 4 3 7 7 C 1.38183 * 120.02761 * 359.49477 * 6 5 4 8 8 C 1.38437 * 120.00681 * 59.99730 * 3 2 1 9 9 F 1.35095 * 120.02946 * 359.96094 * 8 3 2 10 10 C 1.53100 * 109.49290 * 120.03043 * 2 1 3 11 11 C 1.53180 * 109.15910 * 62.37872 * 10 2 1 12 12 C 1.53180 * 109.03915 * 56.98412 * 11 10 2 13 13 C 1.53092 * 109.15820 * 303.01470 * 12 11 10 14 14 H 1.09000 * 109.47857 * 177.58995 * 13 12 11 15 15 C 1.50702 * 109.49387 * 297.61868 * 13 12 11 16 16 H 1.07999 * 119.99922 * 5.59862 * 15 13 12 17 17 C 1.37870 * 119.99927 * 185.58954 * 15 13 12 18 18 N 1.31516 * 120.00024 * 180.02562 * 17 15 13 19 19 Si 1.86805 * 120.00407 * 0.02562 * 17 15 13 20 20 H 1.48498 * 109.47386 * 89.99346 * 19 17 15 21 21 H 1.48497 * 109.47140 * 209.99795 * 19 17 15 22 22 H 1.48500 * 109.46687 * 329.99610 * 19 17 15 23 23 O 1.42900 * 109.41468 * 57.61439 * 13 12 11 24 24 H 1.08999 * 109.47409 * 77.54410 * 1 2 3 25 25 H 1.09001 * 109.46795 * 197.54857 * 1 2 3 26 26 H 1.09001 * 109.46821 * 317.54181 * 1 2 3 27 27 H 1.08000 * 119.98473 * 0.03147 * 4 3 2 28 28 H 1.08002 * 119.96804 * 179.97438 * 5 4 3 29 29 H 1.08006 * 119.98862 * 179.75059 * 6 5 4 30 30 H 1.07998 * 120.01668 * 180.27001 * 7 6 5 31 31 H 1.08999 * 109.52231 * 182.28390 * 10 2 1 32 32 H 1.08999 * 109.51725 * 302.47427 * 10 2 1 33 33 H 1.09000 * 109.54349 * 297.11203 * 11 10 2 34 34 H 1.09004 * 109.61507 * 176.89228 * 11 10 2 35 35 H 1.08998 * 109.51675 * 183.11480 * 12 11 10 36 36 H 1.08988 * 109.51974 * 62.92041 * 12 11 10 37 37 H 0.96999 * 120.00196 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0327 1.4207 0.0000 4 6 2.8277 1.8728 -1.0363 5 6 3.2893 3.1757 -1.0362 6 6 2.9606 4.0266 0.0028 7 6 2.1615 3.5785 1.0372 8 6 1.6985 2.2733 1.0382 9 9 0.9210 1.8327 2.0513 10 6 2.0408 -0.7223 1.2495 11 6 1.5762 -2.1814 1.2120 12 6 2.0769 -2.8322 -0.0812 13 6 1.5646 -2.0284 -1.2792 14 1 1.9531 -2.4620 -2.2007 15 6 0.0582 -2.0653 -1.3024 16 1 -0.4831 -2.5299 -0.4915 17 6 -0.6288 -1.5059 -2.3588 18 7 -1.9434 -1.5377 -2.3789 19 14 0.3075 -0.7028 -3.7616 20 1 0.5957 -1.7159 -4.8084 21 1 -0.5130 0.3900 -4.3428 22 1 1.5842 -0.1441 -3.2487 23 8 2.0065 -0.6741 -1.1665 24 1 -0.3634 0.2216 -1.0034 25 1 -0.3633 -0.9799 0.3099 26 1 -0.3633 0.7582 0.6937 27 1 3.0882 1.2078 -1.8465 28 1 3.9108 3.5279 -1.8462 29 1 3.3252 5.0433 0.0038 30 1 1.9013 4.2446 1.8465 31 1 3.1301 -0.6873 1.2707 32 1 1.6424 -0.2358 2.1398 33 1 0.4872 -2.2182 1.2408 34 1 1.9819 -2.7168 2.0704 35 1 1.7042 -3.8546 -0.1423 36 1 3.1668 -2.8398 -0.0867 37 1 -2.4268 -1.1445 -3.1222 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310446399.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:59 Heat of formation + Delta-G solvation = -69.764256 kcal Electronic energy + Delta-G solvation = -21463.798020 eV Core-core repulsion = 18313.346220 eV Total energy + Delta-G solvation = -3150.451800 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.90609 -41.19841 -39.38914 -34.87318 -34.38061 -34.02233 -31.48031 -30.48611 -29.76240 -26.44506 -25.01470 -23.97455 -23.23509 -22.04750 -20.23406 -18.91661 -18.35420 -17.38859 -17.27350 -16.61896 -16.59854 -15.93823 -15.80250 -15.49732 -15.07161 -14.86629 -14.46193 -14.17697 -14.06911 -13.66462 -13.49407 -13.38237 -13.02417 -12.89473 -12.64368 -12.40353 -12.05345 -11.99844 -11.70847 -11.60679 -11.53580 -11.18136 -10.65384 -10.44269 -10.03087 -9.76054 -9.43905 -8.25789 -6.20684 0.24799 0.34114 1.34518 1.40902 1.64708 2.43653 2.71026 2.89271 3.29508 3.42633 3.73810 3.98314 4.06138 4.14486 4.18796 4.34354 4.43335 4.46857 4.52032 4.60304 4.84720 4.88680 4.89912 4.98995 5.08209 5.16849 5.17420 5.23697 5.27703 5.34818 5.41918 5.47550 5.57041 5.62309 5.68491 5.94745 6.03809 6.19823 6.70839 6.85011 7.39689 8.87625 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019841 B = 0.009590 C = 0.008156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.915306 B = 2919.143519 C = 3432.281461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.169 3.831 3 C -0.120 4.120 4 C -0.094 4.094 5 C -0.129 4.129 6 C -0.090 4.090 7 C -0.155 4.155 8 C 0.079 3.921 9 F -0.146 7.146 10 C -0.128 4.128 11 C -0.111 4.111 12 C -0.127 4.127 13 C 0.170 3.830 14 H 0.062 0.938 15 C -0.521 4.521 16 H 0.048 0.952 17 C 0.038 3.962 18 N -0.934 5.934 19 Si 0.907 3.093 20 H -0.281 1.281 21 H -0.303 1.303 22 H -0.213 1.213 23 O -0.390 6.390 24 H 0.037 0.963 25 H 0.078 0.922 26 H 0.023 0.977 27 H 0.126 0.874 28 H 0.156 0.844 29 H 0.171 0.829 30 H 0.158 0.842 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.314 9.575 5.685 16.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.129 3.871 3 C -0.121 4.121 4 C -0.112 4.112 5 C -0.146 4.146 6 C -0.108 4.108 7 C -0.173 4.173 8 C 0.060 3.940 9 F -0.125 7.125 10 C -0.165 4.165 11 C -0.148 4.148 12 C -0.165 4.165 13 C 0.114 3.886 14 H 0.080 0.920 15 C -0.558 4.558 16 H 0.066 0.934 17 C -0.161 4.161 18 N -0.574 5.574 19 Si 0.733 3.267 20 H -0.207 1.207 21 H -0.230 1.230 22 H -0.135 1.135 23 O -0.311 6.311 24 H 0.056 0.944 25 H 0.097 0.903 26 H 0.042 0.958 27 H 0.144 0.856 28 H 0.174 0.826 29 H 0.188 0.812 30 H 0.176 0.824 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.276 9.680 5.510 16.576 hybrid contribution -0.925 -0.312 -0.589 1.140 sum 11.352 9.368 4.922 15.519 Atomic orbital electron populations 1.22689 0.95157 1.01664 1.00036 1.19745 0.92823 0.87806 0.86739 1.20029 1.00622 0.95483 0.95946 1.21120 0.95838 0.97047 0.97179 1.21576 1.00500 0.92546 1.00019 1.21412 0.96009 1.01271 0.92110 1.21416 1.00592 0.93071 1.02238 1.17742 0.95554 0.94279 0.86474 1.91412 1.72839 1.90046 1.58190 1.22056 1.00641 0.96531 0.97301 1.21501 1.00686 0.94943 0.97654 1.21923 0.99792 0.99333 0.95470 1.20145 0.92812 0.80135 0.95509 0.92003 1.21448 0.91391 1.36929 1.06079 0.93395 1.25488 0.94915 0.95620 1.00058 1.70051 1.08102 1.46549 1.32717 0.86389 0.82147 0.78629 0.79553 1.20740 1.22989 1.13464 1.87865 1.73633 1.27354 1.42234 0.94389 0.90310 0.95775 0.85561 0.82645 0.81199 0.82413 0.91375 0.91155 0.93054 0.90576 0.91665 0.91472 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.62 6.86 71.98 0.49 -6.13 16 2 C 0.17 6.99 0.83 -11.51 -0.01 6.98 16 3 C -0.12 -4.41 4.79 -19.82 -0.09 -4.50 16 4 C -0.09 -3.08 9.38 22.26 0.21 -2.87 16 5 C -0.13 -3.09 10.04 22.27 0.22 -2.86 16 6 C -0.09 -1.85 10.04 22.26 0.22 -1.63 16 7 C -0.15 -3.81 10.03 22.32 0.22 -3.58 16 8 C 0.08 2.59 6.66 22.38 0.15 2.74 16 9 F -0.15 -5.13 13.47 44.97 0.61 -4.52 16 10 C -0.13 -4.67 4.67 30.69 0.14 -4.52 16 11 C -0.11 -4.05 5.62 30.71 0.17 -3.88 16 12 C -0.13 -4.85 5.60 30.69 0.17 -4.67 16 13 C 0.17 7.71 2.63 29.88 0.08 7.79 16 14 H 0.06 2.79 7.26 -2.39 -0.02 2.78 16 15 C -0.52 -27.83 5.28 25.60 0.14 -27.69 16 16 H 0.05 2.82 6.28 -2.91 -0.02 2.80 16 17 C 0.04 2.15 3.63 84.65 0.31 2.46 16 18 N -0.93 -56.82 13.96 21.44 0.30 -56.53 16 19 Si 0.91 44.38 26.29 68.60 1.80 46.18 16 20 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 22 H -0.21 -9.79 5.62 99.48 0.56 -9.24 16 23 O -0.39 -17.32 6.07 -148.98 -0.90 -18.22 16 24 H 0.04 2.02 5.25 -2.39 -0.01 2.01 16 25 H 0.08 4.06 3.48 -2.39 -0.01 4.05 16 26 H 0.02 1.08 6.01 -2.39 -0.01 1.07 16 27 H 0.13 4.45 7.01 -2.91 -0.02 4.43 16 28 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 29 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 30 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 31 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.07 2.49 6.39 -2.39 -0.02 2.48 16 33 H 0.05 2.15 5.32 -2.39 -0.01 2.14 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.26 15.25 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -64.00 277.74 5.17 -58.83 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.94 Total: 16.64 kcal Atomic # 6 Polarization: -44.82 SS G_CDS: 2.43 Total: -42.39 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.30 Total: -56.53 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.90 Total: -18.22 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.61 Total: -4.52 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.80 Total: 46.18 kcal Total: -64.00 5.17 -58.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310446399.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.933 kcal (2) G-P(sol) polarization free energy of solvation -63.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds