Wall clock time and date at job start Mon Mar 30 2020 07:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.48032 * 2 1 4 4 C 1.38225 * 120.00849 * 119.97762 * 3 2 1 5 5 C 1.38220 * 120.02081 * 179.97438 * 4 3 2 6 6 C 1.38270 * 120.05642 * 359.97438 * 5 4 3 7 7 C 1.38178 * 120.02255 * 359.97438 * 6 5 4 8 8 C 1.38432 * 120.01618 * 299.95345 * 3 2 1 9 9 F 1.35106 * 120.02283 * 0.02562 * 8 3 2 10 10 C 1.53094 * 109.47913 * 239.97807 * 2 1 3 11 11 C 1.53185 * 109.16402 * 297.61535 * 10 2 1 12 12 C 1.53179 * 109.03319 * 303.02181 * 11 10 2 13 13 C 1.53085 * 109.16679 * 56.98383 * 12 11 10 14 14 H 1.08994 * 109.48362 * 62.36973 * 13 12 11 15 15 C 1.50703 * 109.48312 * 182.40856 * 13 12 11 16 16 H 1.08001 * 119.99698 * 359.97438 * 15 13 12 17 17 C 1.37876 * 120.00066 * 179.97438 * 15 13 12 18 18 N 1.31512 * 119.99987 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99714 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47099 * 60.00452 * 19 17 15 21 21 H 1.48495 * 109.46829 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47412 * 300.00204 * 19 17 15 23 23 O 1.42906 * 109.49072 * 120.03308 * 2 1 3 24 24 H 1.08999 * 109.47269 * 60.00272 * 1 2 3 25 25 H 1.09007 * 109.47530 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47126 * 299.99669 * 1 2 3 27 27 H 1.07994 * 119.98972 * 359.70141 * 4 3 2 28 28 H 1.08003 * 119.97267 * 179.97438 * 5 4 3 29 29 H 1.08000 * 119.99131 * 179.97438 * 6 5 4 30 30 H 1.07996 * 120.01148 * 180.02562 * 7 6 5 31 31 H 1.08999 * 109.52280 * 57.52200 * 10 2 1 32 32 H 1.08998 * 109.52255 * 177.70943 * 10 2 1 33 33 H 1.08994 * 109.54228 * 62.88605 * 11 10 2 34 34 H 1.09000 * 109.54181 * 183.06611 * 11 10 2 35 35 H 1.09002 * 109.51820 * 176.88896 * 12 11 10 36 36 H 1.09000 * 109.51965 * 297.00753 * 12 11 10 37 37 H 0.96996 * 119.99691 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.8269 1.8730 1.0368 5 6 3.2884 3.1758 1.0368 6 6 2.9567 4.0280 -0.0003 7 6 2.1635 3.5778 -1.0383 8 6 1.6992 2.2731 -1.0386 9 9 0.9228 1.8321 -2.0525 10 6 2.0405 -0.7221 -1.2497 11 6 1.5759 -2.1813 -1.2123 12 6 2.0768 -2.8322 0.0807 13 6 1.5649 -2.0286 1.2789 14 1 0.4754 -2.0553 1.2957 15 6 2.1023 -2.6283 2.5528 16 1 2.7443 -3.4958 2.5124 17 6 1.7743 -2.0694 3.7698 18 7 0.9929 -1.0127 3.8189 19 14 2.4399 -2.8131 5.3488 20 1 3.9243 -2.7769 5.3258 21 1 1.9433 -2.0335 6.5109 22 1 1.9809 -4.2206 5.4650 23 8 2.0068 -0.6743 1.1663 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.0834 1.2094 1.8494 28 1 3.9087 3.5285 1.8476 29 1 3.3175 5.0460 0.0010 30 1 1.9049 4.2434 -1.8484 31 1 1.6419 -0.2356 -2.1399 32 1 3.1297 -0.6871 -1.2712 33 1 0.4869 -2.2181 -1.2408 34 1 1.9814 -2.7152 -2.0717 35 1 1.7042 -3.8547 0.1418 36 1 3.1668 -2.8408 0.0855 37 1 0.7619 -0.6198 4.6751 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310446408.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:03 Heat of formation + Delta-G solvation = -74.969341 kcal Electronic energy + Delta-G solvation = -20918.013262 eV Core-core repulsion = 17767.335752 eV Total energy + Delta-G solvation = -3150.677510 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.62295 -39.37409 -37.82926 -33.40588 -32.56851 -31.73843 -30.21493 -29.07556 -27.56256 -25.25086 -23.23911 -22.47032 -21.79097 -20.61129 -18.30186 -17.25923 -16.58335 -16.16062 -15.51215 -15.32302 -14.67115 -14.53206 -14.16462 -14.04880 -13.65528 -13.35477 -12.90722 -12.58233 -12.43393 -11.97615 -11.88640 -11.69019 -11.40529 -11.21368 -10.91463 -10.82382 -10.61482 -10.51454 -10.30454 -10.13005 -9.83929 -9.57372 -8.83533 -8.60676 -8.48949 -8.33595 -7.78515 -6.01866 -4.14054 1.49562 1.60507 3.31150 3.35934 3.38556 3.96725 4.40329 4.54633 4.77617 5.05198 5.19782 5.29739 5.46315 5.52794 5.59999 5.66123 5.79462 5.87923 6.01727 6.04389 6.21563 6.28519 6.33588 6.40272 6.43591 6.49374 6.58139 6.68762 6.78437 6.85508 6.89170 6.98057 6.99867 7.04769 7.28799 7.54928 7.89246 8.28901 8.76919 9.10868 9.55776 11.04908 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.021499 B = 0.007485 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.091602 B = 3740.137028 C = 4608.794436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.151 3.849 3 C -0.088 4.088 4 C -0.057 4.057 5 C -0.137 4.137 6 C -0.105 4.105 7 C -0.165 4.165 8 C 0.096 3.904 9 F -0.140 7.140 10 C -0.138 4.138 11 C -0.120 4.120 12 C -0.145 4.145 13 C 0.219 3.781 14 H 0.021 0.979 15 C -0.527 4.527 16 H 0.063 0.937 17 C 0.080 3.920 18 N -0.858 5.858 19 Si 0.889 3.111 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 O -0.344 6.344 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.151 0.849 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.715 7.050 -8.367 11.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.110 3.890 3 C -0.089 4.089 4 C -0.075 4.075 5 C -0.155 4.155 6 C -0.123 4.123 7 C -0.184 4.184 8 C 0.077 3.923 9 F -0.119 7.119 10 C -0.176 4.176 11 C -0.157 4.157 12 C -0.183 4.183 13 C 0.164 3.836 14 H 0.038 0.962 15 C -0.564 4.564 16 H 0.081 0.919 17 C -0.127 4.127 18 N -0.493 5.493 19 Si 0.717 3.283 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.202 1.202 23 O -0.263 6.263 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.169 0.831 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.702 7.245 -8.151 11.038 hybrid contribution 0.048 -0.464 0.486 0.673 sum 1.750 6.782 -7.665 10.383 Atomic orbital electron populations 1.22365 0.95848 1.02712 1.01659 1.19797 0.92628 0.87722 0.88805 1.19937 0.99023 0.95788 0.94153 1.21225 0.93449 0.95275 0.97583 1.21259 1.01270 0.94094 0.98871 1.20899 0.97955 0.99616 0.93833 1.20945 1.02030 0.94280 1.01114 1.17487 0.95078 0.93161 0.86622 1.91415 1.72629 1.89761 1.58092 1.22177 1.00971 0.96485 0.97987 1.21641 1.00473 0.95204 0.98389 1.22273 1.00795 0.99596 0.95629 1.19731 0.94525 0.77907 0.91417 0.96169 1.20969 1.32842 1.12924 0.89666 0.91922 1.25044 0.94200 0.94396 0.99029 1.70029 1.33652 1.20300 1.25357 0.86721 0.79548 0.79257 0.82797 1.20121 1.21225 1.20170 1.88319 1.72441 1.27509 1.38057 0.92912 0.91574 0.91775 0.83143 0.85766 0.85768 0.85432 0.91858 0.92014 0.92331 0.93142 0.92502 0.92576 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 7.72 37.16 0.29 -3.12 16 2 C 0.15 3.13 0.83 -91.73 -0.08 3.06 16 3 C -0.09 -1.68 4.79 -104.56 -0.50 -2.18 16 4 C -0.06 -1.07 9.38 -39.59 -0.37 -1.44 16 5 C -0.14 -2.05 10.04 -39.58 -0.40 -2.45 16 6 C -0.10 -1.39 10.04 -39.59 -0.40 -1.79 16 7 C -0.16 -2.34 10.03 -39.51 -0.40 -2.73 16 8 C 0.10 1.62 6.80 -39.42 -0.27 1.35 16 9 F -0.14 -2.36 13.40 2.25 0.03 -2.33 16 10 C -0.14 -2.58 4.67 -26.59 -0.12 -2.71 16 11 C -0.12 -2.18 5.72 -26.54 -0.15 -2.33 16 12 C -0.15 -3.07 5.36 -26.60 -0.14 -3.22 16 13 C 0.22 5.51 2.17 -27.84 -0.06 5.45 16 14 H 0.02 0.56 6.34 -51.93 -0.33 0.23 16 15 C -0.53 -14.46 8.79 -34.44 -0.30 -14.76 16 16 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 17 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 18 N -0.86 -24.39 12.84 55.43 0.71 -23.68 16 19 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 O -0.34 -8.50 7.75 -35.23 -0.27 -8.77 16 24 H 0.05 0.95 6.31 -51.93 -0.33 0.62 16 25 H 0.07 1.35 4.98 -51.93 -0.26 1.09 16 26 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.15 3.18 7.01 -52.49 -0.37 2.81 16 28 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 29 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.06 1.09 6.39 -51.93 -0.33 0.76 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.04 6.62 -51.93 -0.34 0.70 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 295.17 15.07 4.45 4.45 Total: -1.00 -28.72 295.17 -7.98 -36.70 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.88 Total: 2.49 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -3.00 Total: -24.78 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.71 Total: -23.68 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.27 Total: -8.77 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.03 Total: -2.33 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.72 -7.98 -36.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310446408.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.266 kcal (2) G-P(sol) polarization free energy of solvation -28.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds