Wall clock time and date at job start Mon Mar 30 2020 07:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.48032 * 2 1 4 4 C 1.38225 * 120.00849 * 119.97762 * 3 2 1 5 5 C 1.38220 * 120.02081 * 179.97438 * 4 3 2 6 6 C 1.38270 * 120.05642 * 359.97438 * 5 4 3 7 7 C 1.38178 * 120.02255 * 359.97438 * 6 5 4 8 8 C 1.38432 * 120.01618 * 299.95345 * 3 2 1 9 9 F 1.35106 * 120.02283 * 0.02562 * 8 3 2 10 10 C 1.53094 * 109.47913 * 239.97807 * 2 1 3 11 11 C 1.53185 * 109.16402 * 297.61535 * 10 2 1 12 12 C 1.53179 * 109.03319 * 303.02181 * 11 10 2 13 13 C 1.53085 * 109.16679 * 56.98383 * 12 11 10 14 14 H 1.08994 * 109.48362 * 62.36973 * 13 12 11 15 15 C 1.50703 * 109.48312 * 182.40856 * 13 12 11 16 16 H 1.08001 * 119.99698 * 359.97438 * 15 13 12 17 17 C 1.37876 * 120.00066 * 179.97438 * 15 13 12 18 18 N 1.31512 * 119.99987 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99714 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47099 * 60.00452 * 19 17 15 21 21 H 1.48495 * 109.46829 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47412 * 300.00204 * 19 17 15 23 23 O 1.42906 * 109.49072 * 120.03308 * 2 1 3 24 24 H 1.08999 * 109.47269 * 60.00272 * 1 2 3 25 25 H 1.09007 * 109.47530 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47126 * 299.99669 * 1 2 3 27 27 H 1.07994 * 119.98972 * 359.70141 * 4 3 2 28 28 H 1.08003 * 119.97267 * 179.97438 * 5 4 3 29 29 H 1.08000 * 119.99131 * 179.97438 * 6 5 4 30 30 H 1.07996 * 120.01148 * 180.02562 * 7 6 5 31 31 H 1.08999 * 109.52280 * 57.52200 * 10 2 1 32 32 H 1.08998 * 109.52255 * 177.70943 * 10 2 1 33 33 H 1.08994 * 109.54228 * 62.88605 * 11 10 2 34 34 H 1.09000 * 109.54181 * 183.06611 * 11 10 2 35 35 H 1.09002 * 109.51820 * 176.88896 * 12 11 10 36 36 H 1.09000 * 109.51965 * 297.00753 * 12 11 10 37 37 H 0.96996 * 119.99691 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.8269 1.8730 1.0368 5 6 3.2884 3.1758 1.0368 6 6 2.9567 4.0280 -0.0003 7 6 2.1635 3.5778 -1.0383 8 6 1.6992 2.2731 -1.0386 9 9 0.9228 1.8321 -2.0525 10 6 2.0405 -0.7221 -1.2497 11 6 1.5759 -2.1813 -1.2123 12 6 2.0768 -2.8322 0.0807 13 6 1.5649 -2.0286 1.2789 14 1 0.4754 -2.0553 1.2957 15 6 2.1023 -2.6283 2.5528 16 1 2.7443 -3.4958 2.5124 17 6 1.7743 -2.0694 3.7698 18 7 0.9929 -1.0127 3.8189 19 14 2.4399 -2.8131 5.3488 20 1 3.9243 -2.7769 5.3258 21 1 1.9433 -2.0335 6.5109 22 1 1.9809 -4.2206 5.4650 23 8 2.0068 -0.6743 1.1663 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.0834 1.2094 1.8494 28 1 3.9087 3.5285 1.8476 29 1 3.3175 5.0460 0.0010 30 1 1.9049 4.2434 -1.8484 31 1 1.6419 -0.2356 -2.1399 32 1 3.1297 -0.6871 -1.2712 33 1 0.4869 -2.2181 -1.2408 34 1 1.9814 -2.7152 -2.0717 35 1 1.7042 -3.8547 0.1418 36 1 3.1668 -2.8408 0.0855 37 1 0.7619 -0.6198 4.6751 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310446408.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:02 Heat of formation + Delta-G solvation = -89.924812 kcal Electronic energy + Delta-G solvation = -20918.661780 eV Core-core repulsion = 17767.335752 eV Total energy + Delta-G solvation = -3151.326028 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.90702 -40.91005 -39.24340 -35.25803 -34.21822 -33.56375 -31.46479 -30.55241 -29.31181 -27.11586 -24.71826 -23.99095 -23.28342 -22.11054 -19.96167 -18.83137 -18.30485 -17.52614 -17.02204 -16.64888 -16.45521 -16.24851 -15.67208 -15.61228 -15.06318 -14.79843 -14.50269 -14.23347 -14.04602 -13.53753 -13.27772 -13.14692 -13.01964 -12.78983 -12.71933 -12.50847 -12.38782 -12.06227 -11.93132 -11.76979 -11.69102 -11.19451 -10.81898 -10.47303 -9.95047 -9.72183 -9.40627 -8.11582 -6.31632 0.25368 0.36707 1.41281 1.43203 1.50708 2.41500 2.72405 2.96513 3.34188 3.48456 3.74391 3.96051 4.04608 4.06079 4.17985 4.25690 4.38971 4.41237 4.47082 4.56994 4.69403 4.76396 4.84432 4.91709 5.01188 5.06447 5.11857 5.20562 5.21017 5.26842 5.31193 5.37488 5.54749 5.59346 5.65023 5.81745 6.04103 6.25379 6.69844 7.22900 7.43470 8.94794 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.021499 B = 0.007485 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.091602 B = 3740.137028 C = 4608.794436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 C -0.115 4.115 4 C -0.087 4.087 5 C -0.132 4.132 6 C -0.089 4.089 7 C -0.153 4.153 8 C 0.084 3.916 9 F -0.142 7.142 10 C -0.131 4.131 11 C -0.114 4.114 12 C -0.139 4.139 13 C 0.217 3.783 14 H -0.009 1.009 15 C -0.553 4.553 16 H 0.061 0.939 17 C 0.030 3.970 18 N -0.889 5.889 19 Si 0.956 3.044 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.267 1.267 23 O -0.368 6.368 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.110 0.890 28 H 0.147 0.853 29 H 0.171 0.829 30 H 0.164 0.836 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.549 8.665 -9.733 13.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.101 3.899 3 C -0.116 4.116 4 C -0.106 4.106 5 C -0.150 4.150 6 C -0.106 4.106 7 C -0.171 4.171 8 C 0.065 3.935 9 F -0.120 7.120 10 C -0.169 4.169 11 C -0.152 4.152 12 C -0.177 4.177 13 C 0.162 3.838 14 H 0.008 0.992 15 C -0.590 4.590 16 H 0.080 0.920 17 C -0.173 4.173 18 N -0.526 5.526 19 Si 0.781 3.219 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.192 1.192 23 O -0.288 6.288 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.128 0.872 28 H 0.165 0.835 29 H 0.189 0.811 30 H 0.181 0.819 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.538 8.850 -9.529 13.250 hybrid contribution -0.211 -0.875 0.879 1.258 sum 2.327 7.975 -8.650 11.993 Atomic orbital electron populations 1.22255 0.96064 1.01931 1.01220 1.20048 0.92611 0.89050 0.88234 1.19891 1.00643 0.95336 0.95772 1.21015 0.95685 0.96795 0.97079 1.21519 1.00696 0.92577 1.00203 1.21394 0.96114 1.01096 0.92007 1.21403 1.00489 0.93183 1.02022 1.17605 0.95711 0.94049 0.86152 1.91400 1.72749 1.89971 1.57926 1.22118 1.00644 0.96602 0.97552 1.21623 1.00747 0.95037 0.97752 1.22142 1.00260 0.99564 0.95720 1.19560 0.92742 0.79018 0.92492 0.99181 1.21381 1.32938 1.13397 0.91325 0.92041 1.25839 0.94380 0.94759 1.02304 1.70169 1.34869 1.21566 1.25949 0.85673 0.78864 0.78729 0.78683 1.19717 1.20791 1.19192 1.88236 1.72698 1.27347 1.40499 0.90709 0.92492 0.94572 0.87177 0.83521 0.81124 0.81869 0.89989 0.92468 0.92005 0.89941 0.91861 0.93176 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.59 7.72 71.98 0.56 -6.03 16 2 C 0.14 6.00 0.83 -11.51 -0.01 5.99 16 3 C -0.12 -4.46 4.79 -19.82 -0.09 -4.56 16 4 C -0.09 -3.36 9.38 22.26 0.21 -3.15 16 5 C -0.13 -3.73 10.04 22.27 0.22 -3.51 16 6 C -0.09 -1.97 10.04 22.26 0.22 -1.75 16 7 C -0.15 -3.74 10.03 22.31 0.22 -3.51 16 8 C 0.08 2.70 6.80 22.37 0.15 2.85 16 9 F -0.14 -4.48 13.40 44.97 0.60 -3.87 16 10 C -0.13 -4.85 4.67 30.69 0.14 -4.71 16 11 C -0.11 -4.08 5.72 30.72 0.18 -3.90 16 12 C -0.14 -5.99 5.36 30.68 0.16 -5.82 16 13 C 0.22 11.44 2.17 29.88 0.06 11.51 16 14 H -0.01 -0.53 6.34 -2.39 -0.02 -0.55 16 15 C -0.55 -31.57 8.79 25.60 0.23 -31.34 16 16 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 17 C 0.03 1.72 5.40 84.65 0.46 2.18 16 18 N -0.89 -52.86 12.84 21.45 0.28 -52.59 16 19 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 23 O -0.37 -19.19 7.75 -148.98 -1.15 -20.34 16 24 H 0.07 2.71 6.31 -2.39 -0.02 2.70 16 25 H 0.06 2.43 4.98 -2.38 -0.01 2.42 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.11 5.05 7.01 -2.91 -0.02 5.03 16 28 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 30 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.08 2.70 6.39 -2.39 -0.02 2.69 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.06 2.17 6.62 -2.39 -0.02 2.15 16 34 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -65.58 295.17 5.53 -60.05 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 1.07 Total: 16.42 kcal Atomic # 6 Polarization: -48.47 SS G_CDS: 2.71 Total: -45.76 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 0.28 Total: -52.59 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -1.15 Total: -20.34 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.60 Total: -3.87 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -65.58 5.53 -60.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310446408.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.880 kcal (2) G-P(sol) polarization free energy of solvation -65.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds