Wall clock time and date at job start Mon Mar 30 2020 07:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.48307 * 2 1 4 4 C 1.38250 * 119.97504 * 270.02547 * 3 2 1 5 5 C 1.38196 * 120.02428 * 180.23537 * 4 3 2 6 6 C 1.38457 * 119.97339 * 359.50816 * 5 4 3 7 7 F 1.35103 * 120.02362 * 180.21068 * 6 5 4 8 8 C 1.38456 * 119.94977 * 0.48564 * 6 5 4 9 9 C 1.38199 * 119.97506 * 359.75344 * 8 6 5 10 10 C 1.53091 * 109.47865 * 120.02441 * 2 1 3 11 11 C 1.53183 * 109.16302 * 62.38572 * 10 2 1 12 12 C 1.53171 * 109.03862 * 56.97904 * 11 10 2 13 13 C 1.53089 * 109.16332 * 303.01925 * 12 11 10 14 14 H 1.08995 * 109.48151 * 297.61481 * 13 12 11 15 15 C 1.50707 * 109.48163 * 177.59028 * 13 12 11 16 16 H 1.07998 * 119.99410 * 0.02562 * 15 13 12 17 17 C 1.37873 * 119.99790 * 180.02562 * 15 13 12 18 18 N 1.31513 * 120.00391 * 359.97438 * 17 15 13 19 19 Si 1.86807 * 119.99654 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47443 * 89.99796 * 19 17 15 21 21 H 1.48503 * 109.46933 * 210.00165 * 19 17 15 22 22 H 1.48501 * 109.46853 * 329.99599 * 19 17 15 23 23 O 1.42900 * 109.41630 * 57.60953 * 13 12 11 24 24 H 1.09003 * 109.47053 * 59.99843 * 1 2 3 25 25 H 1.08997 * 109.47314 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47044 * 300.00101 * 1 2 3 27 27 H 1.08002 * 119.98396 * 359.94944 * 4 3 2 28 28 H 1.08004 * 120.00978 * 179.72210 * 5 4 3 29 29 H 1.07999 * 120.01335 * 179.72141 * 8 6 5 30 30 H 1.07999 * 119.98943 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.52039 * 182.28683 * 10 2 1 32 32 H 1.09000 * 109.52180 * 302.41494 * 10 2 1 33 33 H 1.09001 * 109.54209 * 176.84999 * 11 10 2 34 34 H 1.09000 * 109.54142 * 297.02369 * 11 10 2 35 35 H 1.09001 * 109.52512 * 62.92697 * 12 11 10 36 36 H 1.08998 * 109.52244 * 183.11470 * 12 11 10 37 37 H 0.97001 * 120.00057 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4206 0.0000 4 6 2.2625 2.0720 -1.1976 5 6 2.7281 3.3732 -1.1988 6 6 2.9546 4.0279 0.0000 7 9 3.4056 5.3014 0.0000 8 6 2.7239 3.3746 1.1988 9 6 2.2630 2.0717 1.1975 10 6 2.0405 -0.7222 1.2496 11 6 1.5759 -2.1814 1.2122 12 6 2.0768 -2.8322 -0.0808 13 6 1.5649 -2.0286 -1.2790 14 1 0.4754 -2.0554 -1.2959 15 6 2.1023 -2.6282 -2.5529 16 1 2.7442 -3.4957 -2.5124 17 6 1.7744 -2.0692 -3.7698 18 7 0.9922 -1.0131 -3.8190 19 14 2.4400 -2.8129 -5.3489 20 1 1.4943 -3.8434 -5.8478 21 1 2.5950 -1.7469 -6.3712 22 1 3.7598 -3.4395 -5.0830 23 8 2.0067 -0.6743 -1.1664 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 2.0826 1.5621 -2.1325 28 1 2.9118 3.8803 -2.1345 29 1 2.9045 3.8828 2.1344 30 1 2.0834 1.5618 2.1324 31 1 3.1298 -0.6872 1.2711 32 1 1.6428 -0.2350 2.1399 33 1 1.9827 -2.7157 2.0707 34 1 0.4869 -2.2181 1.2423 35 1 3.1668 -2.8399 -0.0862 36 1 1.7042 -3.8547 -0.1420 37 1 0.7619 -0.6196 -4.6752 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310453979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:06 Heat of formation + Delta-G solvation = -77.516904 kcal Electronic energy + Delta-G solvation = -20496.353012 eV Core-core repulsion = 17345.565032 eV Total energy + Delta-G solvation = -3150.787980 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.64770 -39.64322 -37.71106 -33.37740 -32.60308 -31.70624 -30.70912 -28.74016 -27.59713 -25.31427 -23.12716 -22.90314 -21.66349 -20.54502 -18.24101 -17.44972 -16.69737 -16.05381 -15.56189 -15.34331 -14.80636 -14.48777 -14.42013 -13.97694 -13.47583 -13.19861 -12.98181 -12.78853 -12.49961 -12.22006 -12.00851 -11.62217 -11.54502 -11.13502 -10.94893 -10.80500 -10.68420 -10.54513 -10.28151 -10.19950 -9.84430 -9.62273 -8.89489 -8.75895 -8.50518 -8.26061 -7.81224 -6.04869 -4.15954 1.47076 1.59539 3.28427 3.35954 3.39356 3.94282 4.39227 4.53876 4.75255 5.08704 5.14369 5.18842 5.42106 5.47114 5.56440 5.67874 5.79173 5.82397 5.96201 5.97542 6.19727 6.23626 6.26807 6.34935 6.36860 6.45864 6.50400 6.60128 6.70304 6.81699 6.86902 6.92007 6.94730 7.11285 7.27306 7.51723 7.87252 8.26238 8.75091 9.09036 9.54040 11.02320 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.006842 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.631121 B = 4091.269150 C = 5149.524666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 C -0.065 4.065 4 C -0.055 4.055 5 C -0.159 4.159 6 C 0.081 3.919 7 F -0.149 7.149 8 C -0.163 4.163 9 C -0.094 4.094 10 C -0.137 4.137 11 C -0.121 4.121 12 C -0.145 4.145 13 C 0.218 3.782 14 H 0.021 0.979 15 C -0.525 4.525 16 H 0.063 0.937 17 C 0.080 3.920 18 N -0.859 5.859 19 Si 0.889 3.111 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 O -0.343 6.343 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.152 0.848 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.335 5.409 9.216 10.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.107 3.893 3 C -0.065 4.065 4 C -0.073 4.073 5 C -0.178 4.178 6 C 0.062 3.938 7 F -0.128 7.128 8 C -0.181 4.181 9 C -0.112 4.112 10 C -0.175 4.175 11 C -0.159 4.159 12 C -0.183 4.183 13 C 0.163 3.837 14 H 0.038 0.962 15 C -0.562 4.562 16 H 0.081 0.919 17 C -0.126 4.126 18 N -0.496 5.496 19 Si 0.717 3.283 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 O -0.262 6.262 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.170 0.830 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.381 5.671 8.960 10.611 hybrid contribution 0.327 -0.174 -0.661 0.757 sum 0.707 5.497 8.300 9.980 Atomic orbital electron populations 1.22315 0.95841 1.02540 1.01356 1.19911 0.92539 0.88124 0.88769 1.19913 0.98189 0.95592 0.92791 1.21239 0.93799 0.92184 1.00100 1.21202 1.03529 0.96309 0.96718 1.17735 1.01546 0.79546 0.94950 1.91448 1.87067 1.36791 1.97510 1.20951 1.04533 0.96037 0.96620 1.20892 0.98583 0.93532 0.98178 1.22199 1.01192 0.96378 0.97693 1.21658 1.00444 0.95314 0.98457 1.22270 1.00848 0.99613 0.95603 1.19741 0.94496 0.78050 0.91430 0.96151 1.21011 1.32693 1.12846 0.89686 0.91907 1.25026 0.94154 0.94385 0.99037 1.70018 1.33848 1.20437 1.25254 0.86657 0.79562 0.78892 0.83208 1.20606 1.21116 1.19810 1.88390 1.72391 1.27381 1.38034 0.91598 0.91574 0.93578 0.82987 0.85194 0.85406 0.85235 0.91695 0.92383 0.93171 0.92321 0.92556 0.92507 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 7.92 37.16 0.29 -2.69 16 2 C 0.15 2.82 0.93 -91.73 -0.09 2.73 16 3 C -0.06 -1.15 4.84 -104.62 -0.51 -1.66 16 4 C -0.06 -1.02 9.35 -39.59 -0.37 -1.39 16 5 C -0.16 -2.59 10.03 -39.52 -0.40 -2.99 16 6 C 0.08 1.26 7.30 -39.42 -0.29 0.97 16 7 F -0.15 -2.28 17.27 2.25 0.04 -2.24 16 8 C -0.16 -2.31 10.03 -39.52 -0.40 -2.70 16 9 C -0.09 -1.40 9.14 -39.59 -0.36 -1.76 16 10 C -0.14 -2.27 4.14 -26.59 -0.11 -2.38 16 11 C -0.12 -2.04 5.72 -26.55 -0.15 -2.19 16 12 C -0.15 -2.96 5.36 -26.60 -0.14 -3.11 16 13 C 0.22 5.31 2.17 -27.83 -0.06 5.25 16 14 H 0.02 0.54 6.34 -51.93 -0.33 0.21 16 15 C -0.53 -14.20 8.79 -34.44 -0.30 -14.50 16 16 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 17 C 0.08 2.17 5.40 -17.82 -0.10 2.07 16 18 N -0.86 -23.88 12.84 55.43 0.71 -23.17 16 19 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 O -0.34 -8.20 8.25 -35.23 -0.29 -8.49 16 24 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.07 1.24 4.98 -51.93 -0.26 0.98 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.15 3.22 7.48 -52.49 -0.39 2.83 16 28 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 29 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 30 H 0.13 1.63 6.22 -52.49 -0.33 1.30 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.80 6.66 -51.93 -0.35 0.46 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.95 6.62 -51.93 -0.34 0.61 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 299.66 15.07 4.52 4.52 Total: -1.00 -27.93 299.66 -7.94 -35.87 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -4.92 Total: 2.06 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -2.97 Total: -24.34 kcal Atomic # 7 Polarization: -23.88 SS G_CDS: 0.71 Total: -23.17 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.29 Total: -8.49 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.93 -7.94 -35.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310453979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.644 kcal (2) G-P(sol) polarization free energy of solvation -27.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds