Wall clock time and date at job start Mon Mar 30 2020 07:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.48896 * 2 1 4 4 C 1.38247 * 119.97201 * 269.75673 * 3 2 1 5 5 C 1.38194 * 120.02068 * 179.73081 * 4 3 2 6 6 C 1.38461 * 119.97462 * 0.56459 * 5 4 3 7 7 F 1.35104 * 120.02475 * 179.68375 * 6 5 4 8 8 C 1.38456 * 119.95258 * 359.71023 * 6 5 4 9 9 C 1.38197 * 119.96961 * 359.97438 * 8 6 5 10 10 C 1.53098 * 109.48002 * 239.97197 * 2 1 3 11 11 C 1.53180 * 109.16075 * 297.62693 * 10 2 1 12 12 C 1.53175 * 109.03606 * 303.01560 * 11 10 2 13 13 C 1.53092 * 109.16344 * 56.98567 * 12 11 10 14 14 H 1.09000 * 109.48212 * 62.37239 * 13 12 11 15 15 C 1.50699 * 109.48159 * 182.40725 * 13 12 11 16 16 H 1.08004 * 120.00071 * 359.94573 * 15 13 12 17 17 C 1.37875 * 120.00036 * 179.97438 * 15 13 12 18 18 N 1.31521 * 120.00153 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99979 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47003 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46883 * 120.00229 * 19 17 15 22 22 H 1.48498 * 109.46984 * 239.99968 * 19 17 15 23 23 O 1.42905 * 109.48333 * 120.03225 * 2 1 3 24 24 H 1.09002 * 109.46833 * 299.96397 * 1 2 3 25 25 H 1.08999 * 109.47234 * 59.97183 * 1 2 3 26 26 H 1.09005 * 109.47099 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.98743 * 359.97438 * 4 3 2 28 28 H 1.08005 * 120.01470 * 180.29716 * 5 4 3 29 29 H 1.07991 * 120.01620 * 179.97438 * 8 6 5 30 30 H 1.08001 * 119.98566 * 179.97438 * 9 8 6 31 31 H 1.08996 * 109.52270 * 177.71938 * 10 2 1 32 32 H 1.08995 * 109.57012 * 57.55786 * 10 2 1 33 33 H 1.09005 * 109.54069 * 183.15152 * 11 10 2 34 34 H 1.08999 * 109.54515 * 62.88494 * 11 10 2 35 35 H 1.09004 * 109.52714 * 297.07587 * 12 11 10 36 36 H 1.08998 * 109.52443 * 176.88852 * 12 11 10 37 37 H 0.97002 * 119.99856 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0328 1.4207 0.0000 4 6 2.2680 2.0700 -1.1976 5 6 2.7237 3.3747 -1.1988 6 6 2.9559 4.0274 0.0000 7 9 3.4076 5.3007 0.0000 8 6 2.7254 3.3742 1.1988 9 6 2.2634 2.0717 1.1975 10 6 2.0405 -0.7223 -1.2496 11 6 1.5756 -2.1814 -1.2122 12 6 2.0764 -2.8322 0.0808 13 6 1.5645 -2.0285 1.2790 14 1 0.4750 -2.0551 1.2958 15 6 2.1017 -2.6282 2.5529 16 1 2.7432 -3.4962 2.5126 17 6 1.7738 -2.0692 3.7699 18 7 0.9918 -1.0129 3.8190 19 14 2.4403 -2.8122 5.3489 20 1 3.2903 -3.9856 5.0236 21 1 3.2518 -1.7981 6.0691 22 1 1.3092 -3.2429 6.2092 23 8 2.0066 -0.6743 1.1663 24 1 -0.3633 0.5133 0.8903 25 1 -0.3634 0.5143 -0.8897 26 1 -0.3633 -1.0277 -0.0005 27 1 2.0917 1.5589 -2.1325 28 1 2.9029 3.8835 -2.1345 29 1 2.9065 3.8822 2.1344 30 1 2.0839 1.5617 2.1325 31 1 3.1297 -0.6874 -1.2710 32 1 1.6429 -0.2361 -2.1404 33 1 1.9824 -2.7158 -2.0707 34 1 0.4866 -2.2179 -1.2408 35 1 3.1664 -2.8401 0.0863 36 1 1.7037 -3.8547 0.1420 37 1 0.7608 -0.6199 4.6752 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310453980.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:07 Heat of formation + Delta-G solvation = -91.671007 kcal Electronic energy + Delta-G solvation = -20497.174978 eV Core-core repulsion = 17345.773229 eV Total energy + Delta-G solvation = -3151.401748 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.86219 -41.07809 -39.14174 -35.18100 -34.15172 -33.45367 -31.97414 -30.20291 -29.19614 -27.06545 -24.55091 -24.33838 -23.15272 -22.01132 -19.76600 -18.82083 -18.51289 -17.43793 -17.05074 -16.57488 -16.48188 -16.24637 -15.77280 -15.43346 -14.90171 -14.61903 -14.40529 -14.35582 -13.94390 -13.69902 -13.50153 -13.13439 -12.94245 -12.83487 -12.74710 -12.45553 -12.28785 -12.07688 -11.75300 -11.65563 -11.60529 -11.19874 -10.81230 -10.41173 -9.99984 -9.74049 -9.35394 -8.11244 -6.29357 0.19843 0.34853 1.39058 1.41671 1.52360 2.41617 2.65636 3.04693 3.30996 3.54061 3.78853 3.97429 4.00863 4.12172 4.15002 4.35664 4.41598 4.46638 4.51462 4.58749 4.77416 4.84408 4.91407 5.01694 5.05038 5.07135 5.17779 5.19513 5.22340 5.28309 5.34902 5.41653 5.51545 5.64579 5.74961 5.86380 5.99366 6.28965 6.72840 7.30391 7.46101 8.95259 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.006843 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.841661 B = 4090.860833 C = 5149.137404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 C -0.081 4.081 4 C -0.082 4.082 5 C -0.147 4.147 6 C 0.078 3.922 7 F -0.146 7.146 8 C -0.163 4.163 9 C -0.081 4.081 10 C -0.131 4.131 11 C -0.116 4.116 12 C -0.141 4.141 13 C 0.218 3.782 14 H -0.007 1.007 15 C -0.551 4.551 16 H 0.058 0.942 17 C 0.031 3.969 18 N -0.888 5.888 19 Si 0.951 3.049 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.277 1.277 23 O -0.374 6.374 24 H 0.033 0.967 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.165 0.835 28 H 0.166 0.834 29 H 0.137 0.863 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.885 5.974 -12.000 13.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.096 3.904 3 C -0.081 4.081 4 C -0.100 4.100 5 C -0.165 4.165 6 C 0.059 3.941 7 F -0.125 7.125 8 C -0.182 4.182 9 C -0.099 4.099 10 C -0.169 4.169 11 C -0.153 4.153 12 C -0.179 4.179 13 C 0.162 3.838 14 H 0.011 0.989 15 C -0.588 4.588 16 H 0.076 0.924 17 C -0.172 4.172 18 N -0.524 5.524 19 Si 0.777 3.223 20 H -0.190 1.190 21 H -0.210 1.210 22 H -0.202 1.202 23 O -0.293 6.293 24 H 0.052 0.948 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.182 0.818 28 H 0.184 0.816 29 H 0.155 0.845 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.931 6.226 -11.753 13.332 hybrid contribution 0.153 -0.267 1.505 1.536 sum 1.084 5.959 -10.248 11.904 Atomic orbital electron populations 1.22234 0.95649 1.01872 1.01491 1.20238 0.92882 0.88926 0.88389 1.19964 0.99317 0.95131 0.93731 1.21160 0.97180 0.93667 0.97966 1.21349 1.02221 0.95533 0.97406 1.17827 1.01450 0.79708 0.95127 1.91459 1.86972 1.36575 1.97502 1.21210 1.03414 0.95558 0.97981 1.20927 0.96520 0.93318 0.99139 1.22180 1.01036 0.96065 0.97577 1.21643 1.00873 0.95570 0.97235 1.22150 1.00117 0.99466 0.96187 1.19538 0.92789 0.79158 0.92296 0.98912 1.21464 1.32595 1.13175 0.91577 0.92356 1.25781 0.94464 0.94828 1.02103 1.70157 1.35018 1.21604 1.25669 0.85632 0.78407 0.78550 0.79752 1.19047 1.20957 1.20213 1.88280 1.72796 1.27210 1.41063 0.94760 0.89990 0.92595 0.81806 0.81619 0.84537 0.87234 0.92046 0.88270 0.89921 0.91748 0.93484 0.92292 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.65 7.92 71.98 0.57 -5.08 16 2 C 0.14 5.13 0.94 -11.51 -0.01 5.12 16 3 C -0.08 -2.82 4.84 -19.86 -0.10 -2.92 16 4 C -0.08 -2.13 9.14 22.26 0.20 -1.93 16 5 C -0.15 -3.55 10.03 22.31 0.22 -3.33 16 6 C 0.08 2.25 7.30 22.37 0.16 2.41 16 7 F -0.15 -4.12 17.27 44.97 0.78 -3.34 16 8 C -0.16 -5.34 10.03 22.31 0.22 -5.11 16 9 C -0.08 -3.11 9.35 22.26 0.21 -2.90 16 10 C -0.13 -3.95 4.13 30.69 0.13 -3.83 16 11 C -0.12 -3.60 5.72 30.71 0.18 -3.42 16 12 C -0.14 -5.74 5.36 30.68 0.16 -5.57 16 13 C 0.22 10.99 2.17 29.88 0.06 11.05 16 14 H -0.01 -0.36 6.34 -2.39 -0.02 -0.38 16 15 C -0.55 -30.94 8.79 25.60 0.23 -30.72 16 16 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 17 C 0.03 1.75 5.40 84.65 0.46 2.21 16 18 N -0.89 -51.83 12.84 21.45 0.28 -51.56 16 19 Si 0.95 44.04 29.54 68.60 2.03 46.06 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 O -0.37 -18.57 8.25 -148.98 -1.23 -19.79 16 24 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.06 2.11 4.97 -2.38 -0.01 2.10 16 27 H 0.16 3.12 6.22 -2.91 -0.02 3.10 16 28 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 29 H 0.14 4.10 8.06 -2.92 -0.02 4.08 16 30 H 0.11 5.12 7.48 -2.91 -0.02 5.09 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.10 2.19 6.66 -2.39 -0.02 2.17 16 33 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.06 1.94 6.62 -2.39 -0.02 1.92 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -63.96 299.65 5.61 -58.34 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 1.07 Total: 14.30 kcal Atomic # 6 Polarization: -46.72 SS G_CDS: 2.70 Total: -44.02 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.28 Total: -51.56 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -1.23 Total: -19.79 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.78 Total: -3.34 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -63.96 5.61 -58.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310453980.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.329 kcal (2) G-P(sol) polarization free energy of solvation -63.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds