Wall clock time and date at job start Mon Mar 30 2020 07:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.48087 * 2 1 4 4 C 1.38246 * 119.97534 * 269.72674 * 3 2 1 5 5 C 1.38197 * 120.02398 * 179.72543 * 4 3 2 6 6 C 1.38458 * 119.97563 * 0.56799 * 5 4 3 7 7 F 1.35100 * 120.02487 * 179.67926 * 6 5 4 8 8 C 1.38465 * 119.94814 * 359.70607 * 6 5 4 9 9 C 1.38201 * 119.97437 * 359.97438 * 8 6 5 10 10 C 1.53085 * 109.47928 * 239.96461 * 2 1 3 11 11 C 1.53179 * 109.16600 * 297.62417 * 10 2 1 12 12 C 1.53177 * 109.03614 * 303.02473 * 11 10 2 13 13 C 1.53094 * 109.16501 * 56.97617 * 12 11 10 14 14 H 1.08997 * 109.47832 * 182.40757 * 13 12 11 15 15 C 1.50694 * 109.48812 * 62.38216 * 13 12 11 16 16 H 1.07995 * 120.00183 * 354.55965 * 15 13 12 17 17 C 1.37879 * 119.99992 * 174.56414 * 15 13 12 18 18 N 1.31519 * 119.99713 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00080 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47329 * 59.99620 * 19 17 15 21 21 H 1.48503 * 109.47000 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47085 * 299.99417 * 19 17 15 23 23 O 1.42898 * 109.41260 * 302.39237 * 13 12 11 24 24 H 1.09004 * 109.47103 * 282.50405 * 1 2 3 25 25 H 1.09004 * 109.47280 * 42.49616 * 1 2 3 26 26 H 1.08997 * 109.47523 * 162.50423 * 1 2 3 27 27 H 1.08002 * 119.98386 * 359.97438 * 4 3 2 28 28 H 1.07997 * 120.00819 * 180.25161 * 5 4 3 29 29 H 1.07995 * 120.01020 * 179.97438 * 8 6 5 30 30 H 1.07992 * 119.98796 * 180.02562 * 9 8 6 31 31 H 1.09001 * 109.52195 * 57.53655 * 10 2 1 32 32 H 1.09001 * 109.52171 * 177.72026 * 10 2 1 33 33 H 1.09002 * 109.54425 * 183.15219 * 11 10 2 34 34 H 1.08998 * 109.53935 * 62.88965 * 11 10 2 35 35 H 1.09006 * 109.51741 * 297.07073 * 12 11 10 36 36 H 1.09002 * 109.57496 * 176.91681 * 12 11 10 37 37 H 0.96998 * 119.99269 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4208 0.0000 4 6 2.2683 2.0700 -1.1975 5 6 2.7238 3.3748 -1.1987 6 6 2.9552 4.0278 0.0000 7 9 3.4067 5.3012 0.0000 8 6 2.7242 3.3746 1.1989 9 6 2.2624 2.0720 1.1976 10 6 2.0405 -0.7224 -1.2494 11 6 1.5757 -2.1815 -1.2119 12 6 2.0764 -2.8322 0.0813 13 6 1.5645 -2.0283 1.2793 14 1 1.9530 -2.4619 2.2008 15 6 0.0581 -2.0650 1.3027 16 1 -0.4833 -2.5317 0.4932 17 6 -0.6289 -1.5026 2.3577 18 7 0.0305 -0.9346 3.3437 19 14 -2.4961 -1.5475 2.3863 20 1 -2.9577 -2.9588 2.3691 21 1 -2.9883 -0.8811 3.6188 22 1 -3.0266 -0.8386 1.1942 23 8 2.0065 -0.6741 1.1665 24 1 -0.3633 0.2225 1.0033 25 1 -0.3634 0.7577 -0.6942 26 1 -0.3634 -0.9801 -0.3089 27 1 2.0926 1.5587 -2.1325 28 1 2.9040 3.8831 -2.1344 29 1 2.9048 3.8829 2.1345 30 1 2.0817 1.5625 2.1325 31 1 1.6421 -0.2359 -2.1398 32 1 3.1297 -0.6875 -1.2708 33 1 1.9825 -2.7160 -2.0704 34 1 0.4867 -2.2180 -1.2406 35 1 3.1664 -2.8399 0.0867 36 1 1.7045 -3.8550 0.1432 37 1 -0.4528 -0.5394 4.0860 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310453981.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:09 Heat of formation + Delta-G solvation = -61.748401 kcal Electronic energy + Delta-G solvation = -20910.673320 eV Core-core repulsion = 17760.569114 eV Total energy + Delta-G solvation = -3150.104207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.61133 -39.66599 -37.79582 -33.01285 -32.54476 -31.99077 -30.67140 -28.52186 -27.74764 -24.57633 -23.39560 -22.75296 -21.73965 -20.41294 -18.43539 -17.39390 -16.54515 -15.86688 -15.69311 -15.30532 -14.83082 -14.41740 -14.03914 -13.67131 -13.35692 -13.22032 -12.88970 -12.86382 -12.40427 -12.17185 -11.94793 -11.47992 -11.34620 -11.14293 -10.90416 -10.72865 -10.60431 -10.41959 -10.07956 -10.00905 -9.73227 -9.46515 -8.74984 -8.71513 -8.33082 -8.20215 -7.78708 -6.06869 -4.07883 1.53300 1.63747 3.24406 3.30650 3.33341 4.00420 4.34095 4.58263 4.84315 5.13247 5.18072 5.25965 5.49199 5.60862 5.69064 5.78233 5.87320 5.98254 6.13647 6.23985 6.31282 6.40221 6.41533 6.48804 6.54819 6.64306 6.67907 6.80003 6.91685 6.98060 6.99133 7.10115 7.25719 7.34217 7.60278 7.80325 7.82236 8.15517 8.75478 8.98827 9.49929 10.98089 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.021670 B = 0.007286 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.779758 B = 3842.130779 C = 4493.404170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.172 3.828 3 C -0.062 4.062 4 C -0.095 4.095 5 C -0.161 4.161 6 C 0.078 3.922 7 F -0.150 7.150 8 C -0.159 4.159 9 C -0.060 4.060 10 C -0.135 4.135 11 C -0.112 4.112 12 C -0.143 4.143 13 C 0.211 3.789 14 H 0.066 0.934 15 C -0.546 4.546 16 H 0.059 0.941 17 C 0.080 3.920 18 N -0.861 5.861 19 Si 0.873 3.127 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.273 1.273 23 O -0.366 6.366 24 H 0.077 0.923 25 H 0.009 0.991 26 H 0.091 0.909 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.149 0.851 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.041 0.959 36 H 0.057 0.943 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.621 4.387 -7.371 9.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.132 3.868 3 C -0.062 4.062 4 C -0.113 4.113 5 C -0.180 4.180 6 C 0.059 3.941 7 F -0.129 7.129 8 C -0.178 4.178 9 C -0.078 4.078 10 C -0.173 4.173 11 C -0.149 4.149 12 C -0.181 4.181 13 C 0.156 3.844 14 H 0.084 0.916 15 C -0.583 4.583 16 H 0.077 0.923 17 C -0.125 4.125 18 N -0.498 5.498 19 Si 0.700 3.300 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.198 1.198 23 O -0.286 6.286 24 H 0.096 0.904 25 H 0.028 0.972 26 H 0.109 0.891 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.166 0.834 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.751 4.614 -7.046 9.219 hybrid contribution -1.159 0.165 -0.109 1.176 sum 2.592 4.779 -7.154 8.985 Atomic orbital electron populations 1.22902 0.94200 1.01496 1.02283 1.19644 0.93941 0.86429 0.86823 1.20095 0.97117 0.96321 0.92693 1.20908 0.98590 0.93528 0.98311 1.20958 1.04454 0.95993 0.96595 1.17715 1.01902 0.79567 0.94956 1.91442 1.87096 1.36846 1.97513 1.21183 1.03639 0.96292 0.96655 1.21167 0.94350 0.92287 0.99946 1.22174 1.00238 0.96804 0.98089 1.21520 1.01661 0.94714 0.97020 1.22188 0.98602 0.99870 0.97398 1.19734 0.93590 0.78647 0.92466 0.91607 1.21373 0.91788 1.38725 1.06462 0.92304 1.24909 0.97515 0.94758 0.95349 1.70002 1.35157 1.35615 1.08980 0.86978 0.86754 0.78456 0.77765 1.20159 1.21197 1.19782 1.87931 1.72651 1.27673 1.40320 0.90383 0.97239 0.89076 0.85193 0.85454 0.85287 0.83373 0.92476 0.92478 0.93962 0.90959 0.94044 0.92446 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 6.97 37.16 0.26 -3.00 16 2 C 0.17 3.48 0.94 -91.73 -0.09 3.39 16 3 C -0.06 -1.15 4.77 -104.61 -0.50 -1.65 16 4 C -0.10 -1.51 9.14 -39.59 -0.36 -1.87 16 5 C -0.16 -2.39 10.03 -39.52 -0.40 -2.78 16 6 C 0.08 1.23 7.30 -39.42 -0.29 0.95 16 7 F -0.15 -2.34 17.27 2.25 0.04 -2.30 16 8 C -0.16 -2.62 10.03 -39.51 -0.40 -3.01 16 9 C -0.06 -1.12 9.35 -39.59 -0.37 -1.49 16 10 C -0.14 -2.38 4.13 -26.59 -0.11 -2.49 16 11 C -0.11 -1.99 5.63 -26.55 -0.15 -2.14 16 12 C -0.14 -2.82 5.60 -26.59 -0.15 -2.97 16 13 C 0.21 4.98 3.07 -27.84 -0.09 4.89 16 14 H 0.07 1.71 8.14 -51.93 -0.42 1.28 16 15 C -0.55 -13.42 4.70 -34.44 -0.16 -13.59 16 16 H 0.06 1.43 6.04 -52.49 -0.32 1.11 16 17 C 0.08 2.04 3.40 -17.82 -0.06 1.98 16 18 N -0.86 -23.24 13.07 55.43 0.72 -22.51 16 19 Si 0.87 19.98 29.25 -169.99 -4.97 15.00 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 O -0.37 -8.61 8.83 -35.23 -0.31 -8.92 16 24 H 0.08 1.89 5.55 -51.93 -0.29 1.61 16 25 H 0.01 0.17 8.01 -51.93 -0.42 -0.24 16 26 H 0.09 1.99 3.48 -51.93 -0.18 1.81 16 27 H 0.13 1.78 6.22 -52.49 -0.33 1.45 16 28 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 30 H 0.15 3.08 7.48 -52.49 -0.39 2.69 16 31 H 0.06 0.88 6.67 -51.93 -0.35 0.53 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.35 5.33 -51.93 -0.28 1.08 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 LS Contribution 288.70 15.07 4.35 4.35 Total: -1.00 -26.15 288.70 -7.66 -33.81 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -4.64 Total: 4.34 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -2.85 Total: -23.78 kcal Atomic # 7 Polarization: -23.24 SS G_CDS: 0.72 Total: -22.51 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.31 Total: -8.92 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.97 Total: 15.00 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.15 -7.66 -33.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310453981.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.935 kcal (2) G-P(sol) polarization free energy of solvation -26.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds