Wall clock time and date at job start Mon Mar 30 2020 07:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.48087 * 2 1 4 4 C 1.38246 * 119.97534 * 269.72674 * 3 2 1 5 5 C 1.38197 * 120.02398 * 179.72543 * 4 3 2 6 6 C 1.38458 * 119.97563 * 0.56799 * 5 4 3 7 7 F 1.35100 * 120.02487 * 179.67926 * 6 5 4 8 8 C 1.38465 * 119.94814 * 359.70607 * 6 5 4 9 9 C 1.38201 * 119.97437 * 359.97438 * 8 6 5 10 10 C 1.53085 * 109.47928 * 239.96461 * 2 1 3 11 11 C 1.53179 * 109.16600 * 297.62417 * 10 2 1 12 12 C 1.53177 * 109.03614 * 303.02473 * 11 10 2 13 13 C 1.53094 * 109.16501 * 56.97617 * 12 11 10 14 14 H 1.08997 * 109.47832 * 182.40757 * 13 12 11 15 15 C 1.50694 * 109.48812 * 62.38216 * 13 12 11 16 16 H 1.07995 * 120.00183 * 354.55965 * 15 13 12 17 17 C 1.37879 * 119.99992 * 174.56414 * 15 13 12 18 18 N 1.31519 * 119.99713 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00080 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47329 * 59.99620 * 19 17 15 21 21 H 1.48503 * 109.47000 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47085 * 299.99417 * 19 17 15 23 23 O 1.42898 * 109.41260 * 302.39237 * 13 12 11 24 24 H 1.09004 * 109.47103 * 282.50405 * 1 2 3 25 25 H 1.09004 * 109.47280 * 42.49616 * 1 2 3 26 26 H 1.08997 * 109.47523 * 162.50423 * 1 2 3 27 27 H 1.08002 * 119.98386 * 359.97438 * 4 3 2 28 28 H 1.07997 * 120.00819 * 180.25161 * 5 4 3 29 29 H 1.07995 * 120.01020 * 179.97438 * 8 6 5 30 30 H 1.07992 * 119.98796 * 180.02562 * 9 8 6 31 31 H 1.09001 * 109.52195 * 57.53655 * 10 2 1 32 32 H 1.09001 * 109.52171 * 177.72026 * 10 2 1 33 33 H 1.09002 * 109.54425 * 183.15219 * 11 10 2 34 34 H 1.08998 * 109.53935 * 62.88965 * 11 10 2 35 35 H 1.09006 * 109.51741 * 297.07073 * 12 11 10 36 36 H 1.09002 * 109.57496 * 176.91681 * 12 11 10 37 37 H 0.96998 * 119.99269 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4208 0.0000 4 6 2.2683 2.0700 -1.1975 5 6 2.7238 3.3748 -1.1987 6 6 2.9552 4.0278 0.0000 7 9 3.4067 5.3012 0.0000 8 6 2.7242 3.3746 1.1989 9 6 2.2624 2.0720 1.1976 10 6 2.0405 -0.7224 -1.2494 11 6 1.5757 -2.1815 -1.2119 12 6 2.0764 -2.8322 0.0813 13 6 1.5645 -2.0283 1.2793 14 1 1.9530 -2.4619 2.2008 15 6 0.0581 -2.0650 1.3027 16 1 -0.4833 -2.5317 0.4932 17 6 -0.6289 -1.5026 2.3577 18 7 0.0305 -0.9346 3.3437 19 14 -2.4961 -1.5475 2.3863 20 1 -2.9577 -2.9588 2.3691 21 1 -2.9883 -0.8811 3.6188 22 1 -3.0266 -0.8386 1.1942 23 8 2.0065 -0.6741 1.1665 24 1 -0.3633 0.2225 1.0033 25 1 -0.3634 0.7577 -0.6942 26 1 -0.3634 -0.9801 -0.3089 27 1 2.0926 1.5587 -2.1325 28 1 2.9040 3.8831 -2.1344 29 1 2.9048 3.8829 2.1345 30 1 2.0817 1.5625 2.1325 31 1 1.6421 -0.2359 -2.1398 32 1 3.1297 -0.6875 -1.2708 33 1 1.9825 -2.7160 -2.0704 34 1 0.4867 -2.2180 -1.2406 35 1 3.1664 -2.8399 0.0867 36 1 1.7045 -3.8550 0.1432 37 1 -0.4528 -0.5394 4.0860 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310453981.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:08 Heat of formation + Delta-G solvation = -74.507695 kcal Electronic energy + Delta-G solvation = -20911.226605 eV Core-core repulsion = 17760.569114 eV Total energy + Delta-G solvation = -3150.657491 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.85060 -41.17628 -39.24059 -34.78711 -34.14511 -33.65782 -31.96373 -29.96346 -29.52999 -26.28435 -24.91344 -24.17216 -23.19775 -21.90989 -20.11418 -18.67497 -18.27222 -17.27231 -17.18746 -16.59167 -16.54447 -15.84046 -15.65630 -15.35332 -14.85154 -14.60587 -14.38319 -14.29604 -13.90323 -13.69340 -13.55133 -13.06252 -12.91123 -12.72822 -12.67821 -12.45182 -12.20015 -11.94649 -11.67176 -11.50361 -11.37238 -11.12851 -10.50883 -10.27705 -9.98895 -9.71277 -9.32938 -8.03929 -6.07937 0.22304 0.35777 1.40346 1.43047 1.47027 2.43212 2.68285 3.13205 3.32143 3.55705 3.84380 3.99540 4.03784 4.23863 4.24911 4.45181 4.50835 4.53880 4.63343 4.72987 4.98514 4.98875 5.02562 5.06246 5.11487 5.20453 5.22689 5.31297 5.34964 5.44493 5.46929 5.54808 5.72165 5.80501 5.88459 5.99923 6.07622 6.25545 6.83652 7.22433 7.53645 9.01219 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.021670 B = 0.007286 C = 0.006230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.779758 B = 3842.130779 C = 4493.404170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.164 3.836 3 C -0.082 4.082 4 C -0.087 4.087 5 C -0.147 4.147 6 C 0.075 3.925 7 F -0.146 7.146 8 C -0.160 4.160 9 C -0.082 4.082 10 C -0.130 4.130 11 C -0.109 4.109 12 C -0.138 4.138 13 C 0.206 3.794 14 H 0.025 0.975 15 C -0.537 4.537 16 H 0.064 0.936 17 C 0.040 3.960 18 N -0.897 5.897 19 Si 0.922 3.078 20 H -0.271 1.271 21 H -0.293 1.293 22 H -0.264 1.264 23 O -0.390 6.390 24 H 0.041 0.959 25 H 0.028 0.972 26 H 0.085 0.915 27 H 0.160 0.840 28 H 0.165 0.835 29 H 0.140 0.860 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.757 5.096 -10.637 12.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.125 3.875 3 C -0.082 4.082 4 C -0.105 4.105 5 C -0.165 4.165 6 C 0.056 3.944 7 F -0.125 7.125 8 C -0.179 4.179 9 C -0.100 4.100 10 C -0.168 4.168 11 C -0.146 4.146 12 C -0.175 4.175 13 C 0.150 3.850 14 H 0.043 0.957 15 C -0.575 4.575 16 H 0.082 0.918 17 C -0.162 4.162 18 N -0.535 5.535 19 Si 0.748 3.252 20 H -0.196 1.196 21 H -0.220 1.220 22 H -0.189 1.189 23 O -0.310 6.310 24 H 0.060 0.940 25 H 0.047 0.953 26 H 0.103 0.897 27 H 0.177 0.823 28 H 0.182 0.818 29 H 0.158 0.842 30 H 0.130 0.870 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.881 5.314 -10.329 12.247 hybrid contribution -1.148 0.005 0.912 1.466 sum 2.733 5.318 -9.417 11.155 Atomic orbital electron populations 1.22747 0.95447 1.01602 1.00488 1.19863 0.93166 0.87598 0.86920 1.20125 0.98592 0.95750 0.93779 1.21143 0.97470 0.93818 0.98030 1.21330 1.02250 0.95437 0.97495 1.17809 1.01695 0.79721 0.95130 1.91456 1.86999 1.36545 1.97501 1.21230 1.03232 0.95482 0.97968 1.20913 0.96694 0.93424 0.99009 1.22151 1.00636 0.96396 0.97600 1.21513 1.01150 0.95177 0.96760 1.22079 0.99014 0.99508 0.96940 1.19610 0.93079 0.79588 0.92716 0.95725 1.21577 0.92497 1.37442 1.05976 0.91849 1.25473 1.00698 0.94740 0.95254 1.70136 1.36332 1.37334 1.09745 0.86200 0.82980 0.78505 0.77551 1.19578 1.21958 1.18920 1.87870 1.72845 1.27617 1.42701 0.93991 0.95298 0.89681 0.82273 0.81791 0.84195 0.86991 0.89285 0.91875 0.90611 0.91874 0.93313 0.92071 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.16 6.97 71.98 0.50 -5.66 16 2 C 0.16 6.51 0.94 -11.51 -0.01 6.50 16 3 C -0.08 -2.97 4.77 -19.86 -0.09 -3.06 16 4 C -0.09 -2.42 9.14 22.26 0.20 -2.22 16 5 C -0.15 -3.74 10.03 22.31 0.22 -3.51 16 6 C 0.08 2.21 7.30 22.38 0.16 2.38 16 7 F -0.15 -4.15 17.27 44.97 0.78 -3.37 16 8 C -0.16 -5.22 10.03 22.32 0.22 -5.00 16 9 C -0.08 -3.16 9.35 22.26 0.21 -2.95 16 10 C -0.13 -4.16 4.13 30.68 0.13 -4.03 16 11 C -0.11 -3.56 5.63 30.71 0.17 -3.39 16 12 C -0.14 -5.31 5.60 30.69 0.17 -5.14 16 13 C 0.21 9.98 3.07 29.88 0.09 10.07 16 14 H 0.02 1.37 8.14 -2.39 -0.02 1.35 16 15 C -0.54 -26.87 4.70 25.60 0.12 -26.75 16 16 H 0.06 3.07 6.04 -2.91 -0.02 3.05 16 17 C 0.04 2.09 3.40 84.65 0.29 2.38 16 18 N -0.90 -50.91 13.07 21.45 0.28 -50.63 16 19 Si 0.92 41.66 29.25 68.60 2.01 43.67 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 23 O -0.39 -18.90 8.83 -148.98 -1.32 -20.22 16 24 H 0.04 2.06 5.55 -2.39 -0.01 2.05 16 25 H 0.03 1.06 8.01 -2.38 -0.02 1.04 16 26 H 0.08 3.63 3.48 -2.39 -0.01 3.62 16 27 H 0.16 3.48 6.22 -2.91 -0.02 3.46 16 28 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 29 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 30 H 0.11 5.06 7.48 -2.91 -0.02 5.04 16 31 H 0.09 2.28 6.67 -2.39 -0.02 2.26 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.06 2.20 5.33 -2.39 -0.01 2.18 16 35 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -58.51 288.70 5.22 -53.29 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 1.08 Total: 17.64 kcal Atomic # 6 Polarization: -42.77 SS G_CDS: 2.39 Total: -40.38 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.28 Total: -50.63 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -1.32 Total: -20.22 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.78 Total: -3.37 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.01 Total: 43.67 kcal Total: -58.51 5.22 -53.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310453981.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.217 kcal (2) G-P(sol) polarization free energy of solvation -58.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds