Wall clock time and date at job start Mon Mar 30 2020 07:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38216 * 120.01078 * 2 1 4 4 C 1.38222 * 120.02210 * 180.27578 * 3 2 1 5 5 C 1.50703 * 119.97156 * 179.77092 * 4 3 2 6 6 H 1.08995 * 109.49359 * 24.69498 * 5 4 3 7 7 C 1.53092 * 109.47877 * 264.66427 * 5 4 3 8 8 C 1.53183 * 109.16536 * 182.40721 * 7 5 4 9 9 C 1.53178 * 109.03160 * 56.98445 * 8 7 5 10 10 C 1.53099 * 109.16286 * 303.02009 * 9 8 7 11 11 H 1.09004 * 109.48425 * 177.60022 * 10 9 8 12 12 C 1.50696 * 109.47777 * 297.62342 * 10 9 8 13 13 H 1.07999 * 120.00319 * 359.94806 * 12 10 9 14 14 C 1.37885 * 119.99717 * 179.97438 * 12 10 9 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 O 1.42898 * 109.41337 * 57.61304 * 10 9 8 21 21 C 1.38263 * 120.05523 * 359.49651 * 4 3 2 22 22 C 1.38182 * 120.02195 * 0.25053 * 21 4 3 23 23 C 1.38432 * 120.00952 * 179.77024 * 2 1 3 24 24 F 1.35099 * 120.03318 * 359.97438 * 23 2 1 25 25 H 1.08997 * 109.47143 * 270.22997 * 1 2 3 26 26 H 1.09001 * 109.47227 * 30.23018 * 1 2 3 27 27 H 1.08999 * 109.46994 * 150.22986 * 1 2 3 28 28 H 1.08003 * 119.99186 * 0.04906 * 3 2 1 29 29 H 1.08996 * 109.52837 * 302.31497 * 7 5 4 30 30 H 1.09000 * 109.52087 * 62.44412 * 7 5 4 31 31 H 1.08994 * 109.54359 * 176.84805 * 8 7 5 32 32 H 1.08997 * 109.54244 * 297.03179 * 8 7 5 33 33 H 1.09001 * 109.52381 * 183.11495 * 9 8 7 34 34 H 1.08998 * 109.52688 * 62.92685 * 9 8 7 35 35 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 36 36 H 1.07997 * 119.99398 * 180.27615 * 21 4 3 37 37 H 1.07993 * 120.01127 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1971 -0.0058 5 6 4.3332 2.5028 -0.0110 6 1 3.7078 3.2848 0.4197 7 6 4.6984 2.8758 -1.4501 8 6 5.5146 4.1720 -1.4420 9 6 6.7518 3.9777 -0.5601 10 6 6.3073 3.5621 0.8448 11 1 7.1851 3.3810 1.4652 12 6 5.4785 4.6625 1.4557 13 1 5.2882 5.5680 0.8987 14 6 4.9634 4.5134 2.7260 15 7 4.2396 5.4735 3.2589 16 14 5.2937 2.9478 3.6898 17 1 4.2230 1.9579 3.4083 18 1 6.6070 2.3850 3.2852 19 1 5.3135 3.2558 5.1425 20 8 5.5274 2.3676 0.7622 21 6 4.2733 0.0006 -0.0010 22 6 3.5843 -1.1972 0.0043 23 6 2.1994 -1.1987 0.0048 24 9 1.5248 -2.3692 0.0100 25 1 -0.3633 0.0041 1.0276 26 1 -0.3634 0.8879 -0.5174 27 1 -0.3633 -0.8920 -0.5103 28 1 1.6584 2.1322 0.0008 29 1 5.2900 2.0756 -1.8949 30 1 3.7876 3.0214 -2.0310 31 1 5.8256 4.4134 -2.4584 32 1 4.9056 4.9838 -1.0444 33 1 7.3096 4.9125 -0.5040 34 1 7.3849 3.1998 -0.9868 35 1 3.8770 5.3684 4.1524 36 1 5.3533 0.0020 -0.0010 37 1 4.1255 -2.1317 0.0076 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310456948.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:41 Heat of formation + Delta-G solvation = -98.908812 kcal Electronic energy + Delta-G solvation = -20431.118426 eV Core-core repulsion = 17279.402823 eV Total energy + Delta-G solvation = -3151.715603 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.91102 -40.89684 -39.43039 -34.86222 -34.29811 -33.95225 -33.05052 -30.48073 -27.90991 -27.70571 -25.22232 -23.93996 -23.38201 -21.73315 -20.59687 -18.80253 -18.53515 -17.53741 -17.29454 -16.69893 -16.56773 -15.96838 -15.67015 -15.46588 -15.10779 -14.61600 -14.41003 -14.29725 -14.20501 -14.10394 -13.88735 -13.40906 -13.29898 -12.83716 -12.79362 -12.66952 -12.28155 -11.99916 -11.89502 -11.74921 -11.65656 -11.36578 -10.86483 -10.67247 -10.03955 -9.84342 -9.39306 -8.33598 -6.43202 0.11882 0.24710 1.36542 1.41142 1.52246 2.36661 2.52973 2.91565 3.25341 3.28873 3.76678 3.81799 3.88111 4.14984 4.22071 4.30795 4.35300 4.37138 4.46940 4.66382 4.67975 4.71333 4.83635 4.92403 4.93651 5.02982 5.13750 5.16252 5.22863 5.26068 5.29578 5.32024 5.42384 5.48233 5.64835 5.71217 5.93082 6.11062 6.66453 6.79878 7.32233 8.80132 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.020063 B = 0.007179 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.282645 B = 3899.426122 C = 4394.507797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.122 4.122 3 C -0.097 4.097 4 C -0.089 4.089 5 C 0.136 3.864 6 H 0.046 0.954 7 C -0.125 4.125 8 C -0.109 4.109 9 C -0.127 4.127 10 C 0.170 3.830 11 H 0.061 0.939 12 C -0.536 4.536 13 H 0.047 0.953 14 C 0.036 3.964 15 N -0.936 5.936 16 Si 0.948 3.052 17 H -0.281 1.281 18 H -0.253 1.253 19 H -0.305 1.305 20 O -0.400 6.400 21 C -0.083 4.083 22 C -0.149 4.149 23 C 0.075 3.925 24 F -0.142 7.142 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.137 0.863 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.265 0.735 36 H 0.140 0.860 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.988 -11.925 -9.674 15.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.123 4.123 3 C -0.115 4.115 4 C -0.089 4.089 5 C 0.079 3.921 6 H 0.064 0.936 7 C -0.162 4.162 8 C -0.147 4.147 9 C -0.165 4.165 10 C 0.114 3.886 11 H 0.079 0.921 12 C -0.573 4.573 13 H 0.065 0.935 14 C -0.164 4.164 15 N -0.576 5.576 16 Si 0.777 3.223 17 H -0.207 1.207 18 H -0.177 1.177 19 H -0.234 1.234 20 O -0.320 6.320 21 C -0.101 4.101 22 C -0.167 4.167 23 C 0.056 3.944 24 F -0.120 7.120 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.155 0.845 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.158 0.842 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.043 -12.087 -9.461 15.648 hybrid contribution -0.156 -0.038 0.925 0.939 sum -3.199 -12.124 -8.536 15.169 Atomic orbital electron populations 1.20773 0.88320 1.04239 1.03397 1.20112 0.98365 0.91232 1.02625 1.20908 0.93069 0.98042 0.99456 1.20024 0.93887 0.95123 0.99860 1.20523 0.86974 0.92702 0.91930 0.93585 1.21996 1.00784 0.98195 0.95249 1.21453 0.96615 0.97169 0.99444 1.21918 0.97777 1.01082 0.95734 1.20243 0.91007 0.82930 0.94453 0.92084 1.21680 1.32405 1.03018 1.00223 0.93513 1.25649 0.93824 0.98409 0.98470 1.70056 1.35988 1.34774 1.16760 0.85651 0.80373 0.80500 0.75795 1.20737 1.17656 1.23363 1.87695 1.35169 1.37322 1.71858 1.20987 1.01099 0.90597 0.97454 1.21335 0.92120 1.00182 1.03097 1.17661 0.90425 0.80911 1.05443 1.91444 1.80471 1.45954 1.94179 0.90436 0.89545 0.90457 0.84537 0.90619 0.90494 0.90300 0.93599 0.91942 0.91156 0.92626 0.84192 0.82575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.37 9.83 71.24 0.70 -1.67 16 2 C -0.12 -3.42 5.89 -19.82 -0.12 -3.54 16 3 C -0.10 -3.04 9.33 22.26 0.21 -2.83 16 4 C -0.09 -3.07 5.01 -19.86 -0.10 -3.16 16 5 C 0.14 5.33 2.58 29.88 0.08 5.41 16 6 H 0.05 2.14 6.99 -2.39 -0.02 2.13 16 7 C -0.12 -4.00 5.40 30.69 0.17 -3.84 16 8 C -0.11 -3.70 5.77 30.72 0.18 -3.53 16 9 C -0.13 -4.65 5.59 30.69 0.17 -4.48 16 10 C 0.17 7.64 2.64 29.88 0.08 7.72 16 11 H 0.06 2.80 7.20 -2.38 -0.02 2.79 16 12 C -0.54 -28.99 7.17 25.60 0.18 -28.81 16 13 H 0.05 2.77 7.12 -2.91 -0.02 2.75 16 14 C 0.04 2.07 5.47 84.66 0.46 2.54 16 15 N -0.94 -57.17 13.96 21.45 0.30 -56.87 16 16 Si 0.95 47.34 26.18 68.60 1.80 49.14 16 17 H -0.28 -14.22 7.11 99.48 0.71 -13.51 16 18 H -0.25 -11.96 6.54 99.48 0.65 -11.31 16 19 H -0.31 -15.17 7.11 99.48 0.71 -14.46 16 20 O -0.40 -17.38 7.09 -148.98 -1.06 -18.44 16 21 C -0.08 -2.59 9.35 22.26 0.21 -2.39 16 22 C -0.15 -4.06 10.03 22.32 0.22 -3.84 16 23 C 0.07 2.10 7.24 22.38 0.16 2.26 16 24 F -0.14 -3.81 16.48 44.97 0.74 -3.07 16 25 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.09 1.59 8.09 -2.39 -0.02 1.57 16 27 H 0.08 1.49 7.64 -2.39 -0.02 1.47 16 28 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 29 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.05 1.81 6.86 -2.39 -0.02 1.79 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 35 H 0.26 15.36 8.31 -92.71 -0.77 14.58 16 36 H 0.14 4.20 7.63 -2.91 -0.02 4.18 16 37 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -62.92 300.57 5.38 -57.53 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 1.00 Total: 11.86 kcal Atomic # 6 Polarization: -42.76 SS G_CDS: 2.60 Total: -40.16 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.30 Total: -56.87 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -1.06 Total: -18.44 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.74 Total: -3.07 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.80 Total: 49.14 kcal Total: -62.92 5.38 -57.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310456948.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.378 kcal (2) G-P(sol) polarization free energy of solvation -62.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds