Wall clock time and date at job start Mon Mar 30 2020 07:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38215 * 120.01342 * 2 1 4 4 C 1.38225 * 120.02841 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.97914 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47922 * 25.02349 * 5 4 3 7 7 C 1.53093 * 109.48176 * 265.00482 * 5 4 3 8 8 C 1.53174 * 109.16796 * 182.40845 * 7 5 4 9 9 C 1.53176 * 109.03750 * 56.97490 * 8 7 5 10 10 C 1.53090 * 109.16257 * 303.02496 * 9 8 7 11 11 H 1.09000 * 109.48474 * 297.60889 * 10 9 8 12 12 C 1.50706 * 109.48160 * 177.58942 * 10 9 8 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 10 9 14 14 C 1.37871 * 120.00102 * 179.97438 * 12 10 9 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47483 * 269.99808 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00322 * 16 14 12 19 19 H 1.48507 * 109.46904 * 150.00145 * 16 14 12 20 20 O 1.42898 * 109.48253 * 145.05904 * 5 4 3 21 21 C 1.38271 * 120.04925 * 0.25727 * 4 3 2 22 22 C 1.38178 * 120.02278 * 359.48842 * 21 4 3 23 23 C 1.38435 * 120.01224 * 179.97438 * 2 1 3 24 24 F 1.35106 * 120.02720 * 0.02562 * 23 2 1 25 25 H 1.09004 * 109.47179 * 90.00246 * 1 2 3 26 26 H 1.08994 * 109.47441 * 209.99956 * 1 2 3 27 27 H 1.09001 * 109.47241 * 330.00096 * 1 2 3 28 28 H 1.08002 * 119.98810 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.52623 * 62.49731 * 7 5 4 30 30 H 1.09004 * 109.52127 * 302.31389 * 7 5 4 31 31 H 1.09006 * 109.54134 * 297.11056 * 8 7 5 32 32 H 1.08997 * 109.61919 * 176.89411 * 8 7 5 33 33 H 1.09002 * 109.52382 * 183.11759 * 9 8 7 34 34 H 1.09002 * 109.51879 * 62.92923 * 9 8 7 35 35 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 36 36 H 1.07996 * 119.98725 * 179.74595 * 21 4 3 37 37 H 1.08001 * 120.01430 * 180.27607 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1968 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.3332 2.5027 0.0000 6 1 3.7079 3.2829 0.4338 7 6 4.6977 2.8813 -1.4380 8 6 5.5140 4.1773 -1.4253 9 6 6.7516 3.9797 -0.5447 10 6 6.3078 3.5588 0.8587 11 1 5.7087 4.3530 1.3041 12 6 7.5219 3.3049 1.7148 13 1 8.5110 3.4315 1.3001 14 6 7.3698 2.9122 3.0276 15 7 6.1652 2.7586 3.5328 16 14 8.8747 2.5969 4.0884 17 1 9.2751 1.1719 3.9685 18 1 9.9909 3.4647 3.6345 19 1 8.5542 2.9034 5.5057 20 8 5.5277 2.3646 0.7721 21 6 4.2733 0.0005 -0.0043 22 6 3.5843 -1.1972 0.0010 23 6 2.1994 -1.1987 0.0005 24 9 1.5247 -2.3693 0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6583 2.1322 -0.0004 29 1 3.7867 3.0303 -2.0175 30 1 5.2890 2.0828 -1.8861 31 1 4.9057 4.9874 -1.0228 32 1 5.8244 4.4243 -2.4405 33 1 7.3094 4.9143 -0.4853 34 1 7.3844 3.2034 -0.9748 35 1 5.3838 2.9220 2.9817 36 1 5.3532 0.0020 -0.0080 37 1 4.1255 -2.1318 0.0017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310456949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:43 Heat of formation + Delta-G solvation = -93.767078 kcal Electronic energy + Delta-G solvation = -20072.757340 eV Core-core repulsion = 16921.264699 eV Total energy + Delta-G solvation = -3151.492641 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.72824 -39.46056 -37.87276 -33.48607 -32.88660 -32.36741 -31.34674 -28.81745 -26.80023 -25.32723 -23.69086 -22.46793 -21.88161 -20.44428 -19.37827 -17.36206 -17.14244 -16.40742 -15.52858 -15.27719 -14.74421 -14.48048 -14.02112 -13.92462 -13.72281 -13.44236 -13.28203 -13.13715 -12.98414 -12.65678 -12.25372 -11.87527 -11.59513 -11.32193 -11.24417 -10.83046 -10.78259 -10.55533 -10.36437 -10.26154 -10.07696 -9.76370 -8.72012 -8.65422 -8.48636 -8.30337 -8.03630 -6.37076 -4.16544 1.36778 1.45485 3.43860 3.46359 3.62078 3.78162 4.44348 4.49261 4.60576 4.87184 4.98240 5.15761 5.32780 5.38921 5.42656 5.53019 5.55305 5.59052 5.63406 5.77294 5.86419 5.92431 5.94364 6.15398 6.18016 6.25590 6.38252 6.42177 6.45689 6.56497 6.65462 6.69685 6.70515 6.91257 7.13875 7.26049 8.06447 8.36337 8.68495 8.86898 9.65904 11.03191 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.020265 B = 0.005904 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.334984 B = 4741.639424 C = 5577.206585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.126 4.126 3 C -0.090 4.090 4 C -0.068 4.068 5 C 0.120 3.880 6 H 0.052 0.948 7 C -0.137 4.137 8 C -0.122 4.122 9 C -0.136 4.136 10 C 0.203 3.797 11 H 0.006 0.994 12 C -0.601 4.601 13 H 0.057 0.943 14 C 0.033 3.967 15 N -0.886 5.886 16 Si 1.070 2.930 17 H -0.287 1.287 18 H -0.288 1.288 19 H -0.284 1.284 20 O -0.365 6.365 21 C -0.063 4.063 22 C -0.153 4.153 23 C 0.084 3.916 24 F -0.145 7.145 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.128 0.872 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.280 0.720 36 H 0.140 0.860 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.133 -3.069 -8.973 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.126 4.126 3 C -0.108 4.108 4 C -0.068 4.068 5 C 0.061 3.939 6 H 0.069 0.931 7 C -0.175 4.175 8 C -0.159 4.159 9 C -0.174 4.174 10 C 0.148 3.852 11 H 0.023 0.977 12 C -0.638 4.638 13 H 0.075 0.925 14 C -0.176 4.176 15 N -0.521 5.521 16 Si 0.898 3.102 17 H -0.213 1.213 18 H -0.214 1.214 19 H -0.209 1.209 20 O -0.285 6.285 21 C -0.081 4.081 22 C -0.171 4.171 23 C 0.065 3.935 24 F -0.124 7.124 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.146 0.854 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.158 0.842 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.637 -3.722 -7.374 11.249 hybrid contribution -0.643 0.427 -1.729 1.893 sum -8.279 -3.295 -9.103 12.738 Atomic orbital electron populations 1.20669 0.90500 1.03080 1.02345 1.19763 0.96622 0.91852 1.04403 1.20696 0.93263 0.96949 0.99879 1.19897 0.92956 0.95452 0.98501 1.20648 0.89485 0.92150 0.91583 0.93068 1.22120 0.99747 0.98424 0.97204 1.21643 0.97891 0.96790 0.99608 1.22127 0.96286 1.00992 0.98031 1.19930 0.90576 0.83928 0.90764 0.97658 1.21896 0.91491 1.53354 0.97069 0.92453 1.25858 1.02484 0.92880 0.96404 1.70633 0.98796 1.42115 1.40540 0.83541 0.74123 0.76626 0.75872 1.21326 1.21411 1.20938 1.88400 1.32021 1.38436 1.69631 1.20974 1.01201 0.90395 0.95541 1.21142 0.92030 0.99837 1.04127 1.17515 0.90077 0.80667 1.05274 1.91436 1.80513 1.46255 1.94204 0.91213 0.91458 0.91111 0.85392 0.92288 0.91528 0.92637 0.92745 0.92313 0.92301 0.90835 0.84197 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.84 36.00 0.35 -0.87 16 2 C -0.13 -1.82 5.89 -104.56 -0.62 -2.44 16 3 C -0.09 -1.37 9.33 -39.59 -0.37 -1.74 16 4 C -0.07 -1.20 5.01 -104.62 -0.52 -1.72 16 5 C 0.12 2.32 2.85 -27.84 -0.08 2.24 16 6 H 0.05 0.99 8.05 -51.93 -0.42 0.57 16 7 C -0.14 -2.28 5.40 -26.59 -0.14 -2.42 16 8 C -0.12 -2.06 6.03 -26.55 -0.16 -2.22 16 9 C -0.14 -2.82 5.36 -26.59 -0.14 -2.96 16 10 C 0.20 5.07 2.10 -27.83 -0.06 5.01 16 11 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 12 C -0.60 -16.80 8.79 -34.44 -0.30 -17.11 16 13 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 14 C 0.03 0.93 5.40 -17.82 -0.10 0.83 16 15 N -0.89 -26.80 13.53 55.43 0.75 -26.05 16 16 Si 1.07 25.00 29.90 -169.99 -5.08 19.92 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 O -0.36 -8.87 7.88 -35.23 -0.28 -9.15 16 21 C -0.06 -1.12 9.35 -39.59 -0.37 -1.49 16 22 C -0.15 -2.41 10.03 -39.51 -0.40 -2.81 16 23 C 0.08 1.30 7.24 -39.42 -0.29 1.01 16 24 F -0.15 -2.19 16.48 2.25 0.04 -2.15 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.74 7.64 -51.93 -0.40 0.34 16 27 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 28 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.28 8.52 6.47 -40.82 -0.26 8.25 16 36 H 0.14 2.62 7.63 -52.49 -0.40 2.21 16 37 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 308.46 15.07 4.65 4.65 Total: -1.00 -30.27 308.46 -8.44 -38.71 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.32 Total: 0.74 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -3.19 Total: -26.68 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.75 Total: -26.05 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.28 Total: -9.15 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.92 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.27 -8.44 -38.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310456949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.062 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds