Wall clock time and date at job start Mon Mar 30 2020 07:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38215 * 120.01342 * 2 1 4 4 C 1.38225 * 120.02841 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.97914 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47922 * 25.02349 * 5 4 3 7 7 C 1.53093 * 109.48176 * 265.00482 * 5 4 3 8 8 C 1.53174 * 109.16796 * 182.40845 * 7 5 4 9 9 C 1.53176 * 109.03750 * 56.97490 * 8 7 5 10 10 C 1.53090 * 109.16257 * 303.02496 * 9 8 7 11 11 H 1.09000 * 109.48474 * 297.60889 * 10 9 8 12 12 C 1.50706 * 109.48160 * 177.58942 * 10 9 8 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 10 9 14 14 C 1.37871 * 120.00102 * 179.97438 * 12 10 9 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47483 * 269.99808 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00322 * 16 14 12 19 19 H 1.48507 * 109.46904 * 150.00145 * 16 14 12 20 20 O 1.42898 * 109.48253 * 145.05904 * 5 4 3 21 21 C 1.38271 * 120.04925 * 0.25727 * 4 3 2 22 22 C 1.38178 * 120.02278 * 359.48842 * 21 4 3 23 23 C 1.38435 * 120.01224 * 179.97438 * 2 1 3 24 24 F 1.35106 * 120.02720 * 0.02562 * 23 2 1 25 25 H 1.09004 * 109.47179 * 90.00246 * 1 2 3 26 26 H 1.08994 * 109.47441 * 209.99956 * 1 2 3 27 27 H 1.09001 * 109.47241 * 330.00096 * 1 2 3 28 28 H 1.08002 * 119.98810 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.52623 * 62.49731 * 7 5 4 30 30 H 1.09004 * 109.52127 * 302.31389 * 7 5 4 31 31 H 1.09006 * 109.54134 * 297.11056 * 8 7 5 32 32 H 1.08997 * 109.61919 * 176.89411 * 8 7 5 33 33 H 1.09002 * 109.52382 * 183.11759 * 9 8 7 34 34 H 1.09002 * 109.51879 * 62.92923 * 9 8 7 35 35 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 36 36 H 1.07996 * 119.98725 * 179.74595 * 21 4 3 37 37 H 1.08001 * 120.01430 * 180.27607 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1968 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.3332 2.5027 0.0000 6 1 3.7079 3.2829 0.4338 7 6 4.6977 2.8813 -1.4380 8 6 5.5140 4.1773 -1.4253 9 6 6.7516 3.9797 -0.5447 10 6 6.3078 3.5588 0.8587 11 1 5.7087 4.3530 1.3041 12 6 7.5219 3.3049 1.7148 13 1 8.5110 3.4315 1.3001 14 6 7.3698 2.9122 3.0276 15 7 6.1652 2.7586 3.5328 16 14 8.8747 2.5969 4.0884 17 1 9.2751 1.1719 3.9685 18 1 9.9909 3.4647 3.6345 19 1 8.5542 2.9034 5.5057 20 8 5.5277 2.3646 0.7721 21 6 4.2733 0.0005 -0.0043 22 6 3.5843 -1.1972 0.0010 23 6 2.1994 -1.1987 0.0005 24 9 1.5247 -2.3693 0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6583 2.1322 -0.0004 29 1 3.7867 3.0303 -2.0175 30 1 5.2890 2.0828 -1.8861 31 1 4.9057 4.9874 -1.0228 32 1 5.8244 4.4243 -2.4405 33 1 7.3094 4.9143 -0.4853 34 1 7.3844 3.2034 -0.9748 35 1 5.3838 2.9220 2.9817 36 1 5.3532 0.0020 -0.0080 37 1 4.1255 -2.1318 0.0017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310456949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:43 Heat of formation + Delta-G solvation = -109.322825 kcal Electronic energy + Delta-G solvation = -20073.431888 eV Core-core repulsion = 16921.264699 eV Total energy + Delta-G solvation = -3152.167189 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.93374 -40.87878 -39.39390 -35.31460 -34.37490 -33.82086 -32.90342 -30.36274 -27.89543 -27.16619 -25.25456 -24.02708 -23.37041 -21.84639 -20.89855 -19.22716 -18.54813 -17.74365 -16.76509 -16.69479 -16.43407 -15.98244 -15.68675 -15.58438 -15.20324 -15.07233 -14.40230 -14.32633 -14.14806 -13.99569 -13.61812 -13.35527 -13.07281 -12.84009 -12.66651 -12.65369 -12.16307 -12.06379 -11.92653 -11.86661 -11.84532 -11.36501 -10.71876 -10.44507 -10.11634 -9.87692 -9.43885 -8.61424 -6.42094 0.08970 0.22244 1.53187 1.61761 1.79377 2.49300 2.56899 2.97450 3.22522 3.40199 3.73180 3.79630 3.83440 4.00804 4.02006 4.19052 4.27472 4.30737 4.34715 4.43360 4.61211 4.70068 4.74762 4.79338 4.88278 4.96617 4.97555 5.05561 5.11321 5.16995 5.19471 5.20732 5.30162 5.44100 5.60205 5.89773 6.00002 6.14814 6.57927 6.90611 7.50446 8.77568 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.020265 B = 0.005904 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.334984 B = 4741.639424 C = 5577.206585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.085 4.085 5 C 0.114 3.886 6 H 0.047 0.953 7 C -0.129 4.129 8 C -0.115 4.115 9 C -0.131 4.131 10 C 0.200 3.800 11 H -0.022 1.022 12 C -0.621 4.621 13 H 0.055 0.945 14 C -0.018 4.018 15 N -0.916 5.916 16 Si 1.117 2.883 17 H -0.278 1.278 18 H -0.267 1.267 19 H -0.282 1.282 20 O -0.392 6.392 21 C -0.085 4.085 22 C -0.153 4.153 23 C 0.076 3.924 24 F -0.142 7.142 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.153 0.847 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.265 0.735 36 H 0.118 0.882 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.194 -3.140 -10.207 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.120 4.120 3 C -0.106 4.106 4 C -0.085 4.085 5 C 0.056 3.944 6 H 0.065 0.935 7 C -0.167 4.167 8 C -0.153 4.153 9 C -0.169 4.169 10 C 0.145 3.855 11 H -0.005 1.005 12 C -0.657 4.657 13 H 0.073 0.927 14 C -0.220 4.220 15 N -0.551 5.551 16 Si 0.938 3.062 17 H -0.203 1.203 18 H -0.191 1.191 19 H -0.207 1.207 20 O -0.312 6.312 21 C -0.103 4.103 22 C -0.172 4.172 23 C 0.057 3.943 24 F -0.120 7.120 25 H 0.108 0.892 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.170 0.830 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.136 0.864 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.704 -3.788 -8.637 12.834 hybrid contribution -0.396 0.423 -1.394 1.510 sum -9.100 -3.365 -10.031 13.955 Atomic orbital electron populations 1.20777 0.87787 1.04059 1.03907 1.20149 0.98545 0.90985 1.02284 1.20915 0.92192 0.98407 0.99135 1.19905 0.94101 0.94496 1.00041 1.20883 0.87692 0.93239 0.92630 0.93501 1.22073 1.01101 0.98015 0.95509 1.21623 0.96079 0.97145 1.00433 1.22002 0.98092 1.00616 0.96166 1.19769 0.89539 0.83408 0.92825 1.00468 1.22323 0.92626 1.52750 0.98045 0.92711 1.27313 1.04264 0.92127 0.98289 1.70760 0.99157 1.44735 1.40475 0.82960 0.71535 0.77327 0.74360 1.20342 1.19137 1.20711 1.88272 1.34016 1.37659 1.71244 1.20845 1.00336 0.91469 0.97628 1.21256 0.92602 0.99781 1.03528 1.17642 0.90001 0.81279 1.05363 1.91446 1.80311 1.46100 1.94171 0.89216 0.91183 0.89487 0.82981 0.88946 0.91953 0.92023 0.89474 0.92026 0.93026 0.92417 0.86382 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.08 9.84 71.24 0.70 -1.38 16 2 C -0.12 -3.18 5.89 -19.82 -0.12 -3.29 16 3 C -0.09 -2.55 9.33 22.26 0.21 -2.34 16 4 C -0.09 -3.00 5.01 -19.86 -0.10 -3.10 16 5 C 0.11 4.41 2.85 29.88 0.09 4.49 16 6 H 0.05 1.83 8.05 -2.39 -0.02 1.81 16 7 C -0.13 -4.09 5.40 30.68 0.17 -3.93 16 8 C -0.12 -3.68 6.03 30.71 0.19 -3.50 16 9 C -0.13 -5.40 5.36 30.68 0.16 -5.23 16 10 C 0.20 10.31 2.10 29.88 0.06 10.38 16 11 H -0.02 -1.23 8.01 -2.39 -0.02 -1.25 16 12 C -0.62 -35.65 8.79 25.60 0.23 -35.42 16 13 H 0.05 3.08 7.74 -2.91 -0.02 3.05 16 14 C -0.02 -1.04 5.40 84.65 0.46 -0.58 16 15 N -0.92 -57.17 13.53 21.45 0.29 -56.88 16 16 Si 1.12 50.84 29.90 68.60 2.05 52.89 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 20 O -0.39 -19.70 7.88 -148.98 -1.17 -20.88 16 21 C -0.08 -3.05 9.35 22.26 0.21 -2.84 16 22 C -0.15 -4.79 10.03 22.31 0.22 -4.56 16 23 C 0.08 2.25 7.24 22.38 0.16 2.41 16 24 F -0.14 -3.99 16.48 44.97 0.74 -3.25 16 25 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.07 1.33 7.64 -2.39 -0.02 1.31 16 27 H 0.09 1.40 8.09 -2.39 -0.02 1.39 16 28 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 29 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.27 16.90 6.47 -92.71 -0.60 16.30 16 36 H 0.12 4.68 7.63 -2.91 -0.02 4.66 16 37 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -67.36 308.46 5.76 -61.60 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 1.22 Total: 15.42 kcal Atomic # 6 Polarization: -51.53 SS G_CDS: 2.63 Total: -48.90 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.29 Total: -56.88 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -1.17 Total: -20.88 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.74 Total: -3.25 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 2.05 Total: 52.89 kcal Total: -67.36 5.76 -61.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310456949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.722 kcal (2) G-P(sol) polarization free energy of solvation -67.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds