Wall clock time and date at job start Mon Mar 30 2020 07:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38222 * 120.01114 * 2 1 4 4 C 1.38223 * 120.02438 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.97407 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.48540 * 340.02230 * 5 4 3 7 7 C 1.53099 * 109.48238 * 100.04399 * 5 4 3 8 8 C 1.53172 * 109.16311 * 177.57756 * 7 5 4 9 9 C 1.53180 * 109.04999 * 303.04008 * 8 7 5 10 10 C 1.53085 * 109.16299 * 56.97037 * 9 8 7 11 11 H 1.09001 * 109.48998 * 182.40805 * 10 9 8 12 12 C 1.50703 * 109.47990 * 62.37948 * 10 9 8 13 13 H 1.07994 * 120.00023 * 0.05755 * 12 10 9 14 14 C 1.37877 * 120.00064 * 180.02562 * 12 10 9 15 15 N 1.31515 * 120.00093 * 179.97438 * 14 12 10 16 16 Si 1.86800 * 120.00000 * 359.97438 * 14 12 10 17 17 H 1.48501 * 109.47056 * 90.00342 * 16 14 12 18 18 H 1.48501 * 109.47394 * 210.00111 * 16 14 12 19 19 H 1.48498 * 109.47197 * 330.00616 * 16 14 12 20 20 O 1.42903 * 109.41878 * 302.39448 * 10 9 8 21 21 C 1.38272 * 120.05019 * 359.97438 * 4 3 2 22 22 C 1.38174 * 120.02453 * 0.28275 * 21 4 3 23 23 C 1.38434 * 120.01398 * 179.97438 * 2 1 3 24 24 F 1.35104 * 120.02542 * 0.04454 * 23 2 1 25 25 H 1.09003 * 109.47162 * 89.99956 * 1 2 3 26 26 H 1.08999 * 109.46896 * 210.00325 * 1 2 3 27 27 H 1.09007 * 109.47140 * 330.00183 * 1 2 3 28 28 H 1.07999 * 119.99008 * 359.95051 * 3 2 1 29 29 H 1.08998 * 109.51927 * 297.50111 * 7 5 4 30 30 H 1.09001 * 109.51916 * 57.68724 * 7 5 4 31 31 H 1.09004 * 109.54571 * 183.16413 * 8 7 5 32 32 H 1.09000 * 109.60609 * 62.95086 * 8 7 5 33 33 H 1.09009 * 109.51742 * 297.06864 * 9 8 7 34 34 H 1.08995 * 109.57747 * 176.91420 * 9 8 7 35 35 H 0.96999 * 120.00059 * 179.97438 * 15 14 12 36 36 H 1.08002 * 119.98328 * 179.97438 * 21 4 3 37 37 H 1.08004 * 120.00935 * 179.72217 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.3332 2.5028 0.0000 6 1 3.6782 3.2998 -0.3519 7 6 4.8057 2.8204 1.4211 8 6 5.6210 4.1170 1.4019 9 6 6.7882 3.9592 0.4226 10 6 6.2389 3.5977 -0.9598 11 1 7.0673 3.4422 -1.6510 12 6 5.3679 4.7197 -1.4636 13 1 5.2213 5.6026 -0.8592 14 6 4.7587 4.6192 -2.6964 15 7 3.9982 5.5980 -3.1358 16 14 5.0135 3.0927 -3.7425 17 1 3.9657 2.0910 -3.4200 18 1 4.9245 3.4568 -5.1794 19 1 6.3527 2.5167 -3.4597 20 8 5.4657 2.3997 -0.8655 21 6 4.2733 0.0005 0.0016 22 6 3.5843 -1.1972 -0.0038 23 6 2.1995 -1.1987 0.0005 24 9 1.5248 -2.3692 0.0002 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8901 0.5138 28 1 1.6584 2.1322 -0.0008 29 1 3.9412 2.9430 2.0735 30 1 5.4280 2.0045 1.7889 31 1 6.0079 4.3193 2.4007 32 1 4.9862 4.9435 1.0825 33 1 7.4506 3.1662 0.7701 34 1 7.3424 4.8957 0.3609 35 1 3.5699 5.5275 -4.0032 36 1 5.3533 0.0020 0.0016 37 1 4.1256 -2.1317 -0.0075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310456950.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:46 Heat of formation + Delta-G solvation = -83.795282 kcal Electronic energy + Delta-G solvation = -20432.141204 eV Core-core repulsion = 17281.080973 eV Total energy + Delta-G solvation = -3151.060231 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.74423 -39.48550 -37.96722 -33.18697 -32.73166 -32.38524 -31.58834 -28.99074 -26.79441 -25.87623 -23.73545 -22.38736 -22.08068 -20.39601 -18.87294 -17.34647 -16.94813 -16.15584 -15.76457 -15.53320 -14.75851 -14.48874 -14.08423 -13.88989 -13.66287 -13.34928 -13.11294 -12.99943 -12.78299 -12.58787 -12.34194 -12.13319 -11.82394 -11.55218 -11.24579 -10.84860 -10.75668 -10.54173 -10.34319 -10.05887 -9.90728 -9.70902 -8.93672 -8.69593 -8.67398 -8.36163 -8.01198 -6.15637 -4.25016 1.36351 1.44388 3.42179 3.46622 3.57596 3.77560 4.43808 4.46892 4.62053 4.88014 4.95214 5.16854 5.35422 5.41154 5.55074 5.57597 5.61670 5.67813 5.70552 5.82515 5.92289 6.01866 6.16509 6.20504 6.27938 6.35412 6.39204 6.44619 6.55200 6.64688 6.75403 6.80643 6.90864 7.02677 7.13670 7.29528 7.59364 8.15505 8.59833 8.86374 9.48086 10.94307 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019995 B = 0.007225 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.043991 B = 3874.726596 C = 4398.970822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.069 4.069 5 C 0.137 3.863 6 H 0.084 0.916 7 C -0.132 4.132 8 C -0.111 4.111 9 C -0.131 4.131 10 C 0.172 3.828 11 H 0.066 0.934 12 C -0.548 4.548 13 H 0.077 0.923 14 C 0.084 3.916 15 N -0.891 5.891 16 Si 0.898 3.102 17 H -0.275 1.275 18 H -0.304 1.304 19 H -0.266 1.266 20 O -0.393 6.393 21 C -0.074 4.074 22 C -0.155 4.155 23 C 0.082 3.918 24 F -0.146 7.146 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.133 0.867 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.265 0.735 36 H 0.136 0.864 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.620 -10.102 8.083 13.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.124 4.124 3 C -0.103 4.103 4 C -0.069 4.069 5 C 0.079 3.921 6 H 0.102 0.898 7 C -0.170 4.170 8 C -0.148 4.148 9 C -0.169 4.169 10 C 0.117 3.883 11 H 0.084 0.916 12 C -0.585 4.585 13 H 0.095 0.905 14 C -0.121 4.121 15 N -0.528 5.528 16 Si 0.727 3.273 17 H -0.201 1.201 18 H -0.232 1.232 19 H -0.190 1.190 20 O -0.314 6.314 21 C -0.092 4.092 22 C -0.174 4.174 23 C 0.063 3.937 24 F -0.124 7.124 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.151 0.849 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.154 0.846 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.703 -10.247 7.855 13.191 hybrid contribution -0.069 -0.685 -0.584 0.903 sum -2.772 -10.933 7.271 13.419 Atomic orbital electron populations 1.20689 0.90422 1.02944 1.02667 1.19830 0.96767 0.91853 1.03977 1.20831 0.93451 0.97190 0.98794 1.20070 0.93283 0.95631 0.97911 1.20511 0.89351 0.92522 0.89738 0.89783 1.22047 0.99671 0.98290 0.96986 1.21468 0.97809 0.97787 0.97760 1.21970 0.97046 1.00315 0.97550 1.20307 0.91680 0.83856 0.92501 0.91614 1.21442 1.29972 1.03623 1.03490 0.90504 1.25005 0.93714 0.95997 0.97354 1.69949 1.30842 1.32154 1.19899 0.86461 0.80188 0.83162 0.77454 1.20060 1.23231 1.19024 1.87773 1.39325 1.39171 1.65111 1.20928 1.00764 0.90595 0.96952 1.21094 0.92082 0.99666 1.04567 1.17505 0.90076 0.80666 1.05493 1.91433 1.80541 1.46238 1.94231 0.91003 0.91537 0.90975 0.84877 0.92228 0.92398 0.93585 0.90696 0.93787 0.91963 0.92566 0.84617 0.85156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.84 36.01 0.35 -0.97 16 2 C -0.12 -1.85 5.89 -104.55 -0.62 -2.47 16 3 C -0.08 -1.38 9.32 -39.59 -0.37 -1.75 16 4 C -0.07 -1.23 4.97 -104.62 -0.52 -1.75 16 5 C 0.14 2.71 2.58 -27.83 -0.07 2.63 16 6 H 0.08 1.89 6.95 -51.93 -0.36 1.53 16 7 C -0.13 -2.25 5.40 -26.59 -0.14 -2.39 16 8 C -0.11 -1.96 5.77 -26.55 -0.15 -2.12 16 9 C -0.13 -2.51 5.59 -26.59 -0.15 -2.65 16 10 C 0.17 3.93 2.64 -27.84 -0.07 3.85 16 11 H 0.07 1.55 7.20 -51.93 -0.37 1.17 16 12 C -0.55 -14.51 7.17 -34.44 -0.25 -14.76 16 13 H 0.08 2.18 7.12 -52.49 -0.37 1.81 16 14 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 15 N -0.89 -26.35 13.96 55.43 0.77 -25.57 16 16 Si 0.90 22.75 26.18 -169.99 -4.45 18.30 16 17 H -0.27 -7.07 7.11 56.52 0.40 -6.66 16 18 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 19 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 20 O -0.39 -8.76 7.27 -35.23 -0.26 -9.01 16 21 C -0.07 -1.22 9.35 -39.59 -0.37 -1.59 16 22 C -0.16 -2.31 10.03 -39.52 -0.40 -2.71 16 23 C 0.08 1.25 7.24 -39.42 -0.29 0.96 16 24 F -0.15 -2.16 16.48 2.25 0.04 -2.12 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.73 7.64 -51.93 -0.40 0.34 16 27 H 0.07 0.76 8.09 -51.92 -0.42 0.34 16 28 H 0.13 2.02 8.04 -52.49 -0.42 1.60 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.47 6.85 -51.93 -0.36 1.11 16 33 H 0.04 0.77 8.14 -51.92 -0.42 0.34 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.14 2.14 7.78 -52.49 -0.41 1.74 16 37 H 0.13 1.62 8.06 -52.48 -0.42 1.19 16 LS Contribution 300.77 15.07 4.53 4.53 Total: -1.00 -29.10 300.77 -7.74 -36.84 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.24 Total: 0.49 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -3.14 Total: -23.46 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.77 Total: -25.57 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.26 Total: -9.01 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.45 Total: 18.30 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.10 -7.74 -36.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310456950.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.954 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds