Wall clock time and date at job start Mon Mar 30 2020 07:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38222 * 120.01114 * 2 1 4 4 C 1.38223 * 120.02438 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.97407 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.48540 * 340.02230 * 5 4 3 7 7 C 1.53099 * 109.48238 * 100.04399 * 5 4 3 8 8 C 1.53172 * 109.16311 * 177.57756 * 7 5 4 9 9 C 1.53180 * 109.04999 * 303.04008 * 8 7 5 10 10 C 1.53085 * 109.16299 * 56.97037 * 9 8 7 11 11 H 1.09001 * 109.48998 * 182.40805 * 10 9 8 12 12 C 1.50703 * 109.47990 * 62.37948 * 10 9 8 13 13 H 1.07994 * 120.00023 * 0.05755 * 12 10 9 14 14 C 1.37877 * 120.00064 * 180.02562 * 12 10 9 15 15 N 1.31515 * 120.00093 * 179.97438 * 14 12 10 16 16 Si 1.86800 * 120.00000 * 359.97438 * 14 12 10 17 17 H 1.48501 * 109.47056 * 90.00342 * 16 14 12 18 18 H 1.48501 * 109.47394 * 210.00111 * 16 14 12 19 19 H 1.48498 * 109.47197 * 330.00616 * 16 14 12 20 20 O 1.42903 * 109.41878 * 302.39448 * 10 9 8 21 21 C 1.38272 * 120.05019 * 359.97438 * 4 3 2 22 22 C 1.38174 * 120.02453 * 0.28275 * 21 4 3 23 23 C 1.38434 * 120.01398 * 179.97438 * 2 1 3 24 24 F 1.35104 * 120.02542 * 0.04454 * 23 2 1 25 25 H 1.09003 * 109.47162 * 89.99956 * 1 2 3 26 26 H 1.08999 * 109.46896 * 210.00325 * 1 2 3 27 27 H 1.09007 * 109.47140 * 330.00183 * 1 2 3 28 28 H 1.07999 * 119.99008 * 359.95051 * 3 2 1 29 29 H 1.08998 * 109.51927 * 297.50111 * 7 5 4 30 30 H 1.09001 * 109.51916 * 57.68724 * 7 5 4 31 31 H 1.09004 * 109.54571 * 183.16413 * 8 7 5 32 32 H 1.09000 * 109.60609 * 62.95086 * 8 7 5 33 33 H 1.09009 * 109.51742 * 297.06864 * 9 8 7 34 34 H 1.08995 * 109.57747 * 176.91420 * 9 8 7 35 35 H 0.96999 * 120.00059 * 179.97438 * 15 14 12 36 36 H 1.08002 * 119.98328 * 179.97438 * 21 4 3 37 37 H 1.08004 * 120.00935 * 179.72217 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.3332 2.5028 0.0000 6 1 3.6782 3.2998 -0.3519 7 6 4.8057 2.8204 1.4211 8 6 5.6210 4.1170 1.4019 9 6 6.7882 3.9592 0.4226 10 6 6.2389 3.5977 -0.9598 11 1 7.0673 3.4422 -1.6510 12 6 5.3679 4.7197 -1.4636 13 1 5.2213 5.6026 -0.8592 14 6 4.7587 4.6192 -2.6964 15 7 3.9982 5.5980 -3.1358 16 14 5.0135 3.0927 -3.7425 17 1 3.9657 2.0910 -3.4200 18 1 4.9245 3.4568 -5.1794 19 1 6.3527 2.5167 -3.4597 20 8 5.4657 2.3997 -0.8655 21 6 4.2733 0.0005 0.0016 22 6 3.5843 -1.1972 -0.0038 23 6 2.1995 -1.1987 0.0005 24 9 1.5248 -2.3692 0.0002 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8901 0.5138 28 1 1.6584 2.1322 -0.0008 29 1 3.9412 2.9430 2.0735 30 1 5.4280 2.0045 1.7889 31 1 6.0079 4.3193 2.4007 32 1 4.9862 4.9435 1.0825 33 1 7.4506 3.1662 0.7701 34 1 7.3424 4.8957 0.3609 35 1 3.5699 5.5275 -4.0032 36 1 5.3533 0.0020 0.0016 37 1 4.1256 -2.1317 -0.0075 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310456950.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:45 Heat of formation + Delta-G solvation = -98.926531 kcal Electronic energy + Delta-G solvation = -20432.797344 eV Core-core repulsion = 17281.080973 eV Total energy + Delta-G solvation = -3151.716372 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.91154 -40.89715 -39.43115 -34.86539 -34.28800 -33.96467 -33.04232 -30.48860 -27.92461 -27.69433 -25.22080 -23.91264 -23.42376 -21.73508 -20.58969 -18.80166 -18.53562 -17.52995 -17.29389 -16.70052 -16.57687 -15.97177 -15.66684 -15.46976 -15.11394 -14.61587 -14.41684 -14.29087 -14.21057 -14.10856 -13.86712 -13.40800 -13.30449 -12.83951 -12.78787 -12.67847 -12.28387 -12.01305 -11.88656 -11.74370 -11.65605 -11.36627 -10.86552 -10.67607 -10.02963 -9.84753 -9.40415 -8.33609 -6.43218 0.11388 0.24541 1.36440 1.41006 1.52257 2.36590 2.52106 2.92541 3.25088 3.29741 3.76184 3.81675 3.88528 4.14673 4.22411 4.30409 4.34377 4.36622 4.46911 4.66307 4.67901 4.70595 4.83392 4.92301 4.93745 5.02684 5.13477 5.16112 5.22120 5.26102 5.29412 5.31878 5.42442 5.48571 5.64664 5.71399 5.92887 6.10987 6.66407 6.79869 7.32229 8.80133 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019995 B = 0.007225 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.043991 B = 3874.726596 C = 4398.970822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.123 4.123 3 C -0.097 4.097 4 C -0.089 4.089 5 C 0.136 3.864 6 H 0.045 0.955 7 C -0.125 4.125 8 C -0.109 4.109 9 C -0.127 4.127 10 C 0.169 3.831 11 H 0.061 0.939 12 C -0.536 4.536 13 H 0.047 0.953 14 C 0.037 3.963 15 N -0.936 5.936 16 Si 0.948 3.052 17 H -0.281 1.281 18 H -0.305 1.305 19 H -0.253 1.253 20 O -0.400 6.400 21 C -0.082 4.082 22 C -0.148 4.148 23 C 0.075 3.925 24 F -0.142 7.142 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.135 0.865 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.265 0.735 36 H 0.142 0.858 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.212 -12.364 9.317 15.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.124 4.124 3 C -0.115 4.115 4 C -0.089 4.089 5 C 0.079 3.921 6 H 0.063 0.937 7 C -0.163 4.163 8 C -0.147 4.147 9 C -0.165 4.165 10 C 0.113 3.887 11 H 0.079 0.921 12 C -0.573 4.573 13 H 0.065 0.935 14 C -0.163 4.163 15 N -0.576 5.576 16 Si 0.777 3.223 17 H -0.207 1.207 18 H -0.233 1.233 19 H -0.177 1.177 20 O -0.320 6.320 21 C -0.100 4.100 22 C -0.167 4.167 23 C 0.056 3.944 24 F -0.120 7.120 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.152 0.848 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.159 0.841 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.284 -12.517 9.102 15.644 hybrid contribution -0.245 0.015 -0.905 0.938 sum -2.529 -12.502 8.197 15.162 Atomic orbital electron populations 1.20775 0.88378 1.04226 1.03376 1.20113 0.98351 0.91266 1.02681 1.20924 0.93185 0.97982 0.99430 1.20016 0.93832 0.95163 0.99906 1.20529 0.88038 0.92771 0.90794 0.93661 1.22002 1.00507 0.98342 0.95399 1.21453 0.97016 0.97199 0.99021 1.21916 0.97812 1.01194 0.95582 1.20244 0.90888 0.82796 0.94723 0.92103 1.21680 1.29387 1.03688 1.02571 0.93517 1.25642 0.93906 0.98042 0.98738 1.70054 1.32847 1.34111 1.20561 0.85652 0.80316 0.80315 0.76041 1.20739 1.23341 1.17707 1.87706 1.40047 1.38076 1.66211 1.20991 1.01102 0.90519 0.97354 1.21338 0.92070 1.00225 1.03053 1.17659 0.90462 0.80866 1.05386 1.91446 1.80481 1.45934 1.94173 0.90462 0.90401 0.89628 0.84753 0.90556 0.90502 0.90289 0.93637 0.91134 0.91948 0.92619 0.84056 0.82471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.42 9.84 71.24 0.70 -1.72 16 2 C -0.12 -3.48 5.89 -19.82 -0.12 -3.59 16 3 C -0.10 -3.09 9.32 22.26 0.21 -2.88 16 4 C -0.09 -3.07 4.97 -19.86 -0.10 -3.17 16 5 C 0.14 5.33 2.58 29.88 0.08 5.41 16 6 H 0.05 2.11 6.95 -2.39 -0.02 2.09 16 7 C -0.12 -4.01 5.40 30.68 0.17 -3.85 16 8 C -0.11 -3.71 5.77 30.71 0.18 -3.53 16 9 C -0.13 -4.65 5.59 30.68 0.17 -4.48 16 10 C 0.17 7.64 2.64 29.88 0.08 7.72 16 11 H 0.06 2.80 7.20 -2.39 -0.02 2.78 16 12 C -0.54 -29.02 7.17 25.60 0.18 -28.84 16 13 H 0.05 2.77 7.12 -2.91 -0.02 2.75 16 14 C 0.04 2.09 5.47 84.65 0.46 2.55 16 15 N -0.94 -57.16 13.96 21.45 0.30 -56.86 16 16 Si 0.95 47.39 26.18 68.60 1.80 49.19 16 17 H -0.28 -14.23 7.11 99.48 0.71 -13.53 16 18 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 19 H -0.25 -12.01 6.54 99.48 0.65 -11.36 16 20 O -0.40 -17.41 7.27 -148.98 -1.08 -18.49 16 21 C -0.08 -2.50 9.35 22.26 0.21 -2.30 16 22 C -0.15 -4.00 10.03 22.31 0.22 -3.78 16 23 C 0.08 2.12 7.24 22.37 0.16 2.28 16 24 F -0.14 -3.80 16.48 44.97 0.74 -3.06 16 25 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.08 1.52 7.64 -2.39 -0.02 1.50 16 27 H 0.08 1.62 8.09 -2.38 -0.02 1.60 16 28 H 0.13 4.10 8.04 -2.91 -0.02 4.07 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.04 1.80 6.85 -2.39 -0.02 1.78 16 33 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.14 4.11 7.78 -2.91 -0.02 4.09 16 37 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -62.99 300.77 5.36 -57.64 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 1.00 Total: 11.76 kcal Atomic # 6 Polarization: -42.77 SS G_CDS: 2.60 Total: -40.17 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.30 Total: -56.86 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -1.08 Total: -18.49 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.74 Total: -3.06 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.80 Total: 49.19 kcal Total: -62.99 5.36 -57.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310456950.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.291 kcal (2) G-P(sol) polarization free energy of solvation -62.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds