Wall clock time and date at job start Mon Mar 30 2020 07:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38219 * 120.01233 * 2 1 4 4 C 1.38223 * 120.02319 * 180.02562 * 3 2 1 5 5 C 1.38270 * 120.05282 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.98607 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47869 * 24.97769 * 6 5 4 8 8 C 1.53097 * 109.48920 * 264.95108 * 6 5 4 9 9 C 1.53180 * 109.21119 * 182.43770 * 8 6 5 10 10 C 1.53177 * 109.03525 * 56.88485 * 9 8 6 11 11 C 1.53098 * 109.21356 * 303.11207 * 10 9 8 12 12 H 1.08999 * 109.47354 * 177.55660 * 11 10 9 13 13 C 1.50698 * 109.48057 * 297.58191 * 11 10 9 14 14 H 1.07997 * 119.99949 * 0.02562 * 13 11 10 15 15 C 1.37877 * 119.99914 * 180.02562 * 13 11 10 16 16 N 1.31515 * 120.00021 * 359.97438 * 15 13 11 17 17 Si 1.86791 * 119.99931 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47657 * 59.99753 * 17 15 13 19 19 H 1.48501 * 109.47262 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47241 * 299.99850 * 17 15 13 21 21 O 1.42898 * 109.48125 * 145.00394 * 6 5 4 22 22 C 1.38173 * 120.02351 * 0.27626 * 5 4 3 23 23 C 1.38442 * 120.01292 * 180.02562 * 2 1 3 24 24 F 1.35096 * 120.02404 * 0.02562 * 23 2 1 25 25 H 1.09010 * 109.46476 * 90.00491 * 1 2 3 26 26 H 1.08998 * 109.47157 * 210.00083 * 1 2 3 27 27 H 1.08996 * 109.47412 * 330.00584 * 1 2 3 28 28 H 1.08001 * 119.98875 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.97041 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.52138 * 302.30791 * 8 6 5 31 31 H 1.09003 * 109.52113 * 62.49701 * 8 6 5 32 32 H 1.09005 * 109.49724 * 297.04659 * 9 8 6 33 33 H 1.09005 * 109.59319 * 176.78366 * 9 8 6 34 34 H 1.09002 * 109.52487 * 183.17418 * 10 9 8 35 35 H 1.09004 * 109.52023 * 63.05037 * 10 9 8 36 36 H 0.96998 * 119.99824 * 179.97438 * 16 15 13 37 37 H 1.08002 * 120.01168 * 179.72559 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2733 0.0004 -0.0005 6 6 5.7803 0.0025 -0.0005 7 1 6.1425 0.9344 0.4334 8 6 6.2912 -0.1238 -1.4382 9 6 7.8219 -0.1824 -1.4258 10 6 8.2699 -1.3516 -0.5434 11 6 7.6826 -1.1778 0.8597 12 1 7.9630 -2.0297 1.4791 13 6 8.2180 0.0892 1.4753 14 1 8.9077 0.7090 0.9217 15 6 7.8273 0.4572 2.7453 16 7 6.9870 -0.2973 3.4193 17 14 8.4905 2.0280 3.5081 18 1 8.1069 3.1884 2.6645 19 1 7.9217 2.1957 4.8696 20 1 9.9708 1.9486 3.5970 21 8 6.2584 -1.1005 0.7721 22 6 3.5842 -1.1972 -0.0058 23 6 2.1995 -1.1988 -0.0005 24 9 1.5248 -2.3692 -0.0016 25 1 -0.3633 -0.0001 -1.0278 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6584 2.1322 -0.0004 29 1 4.1199 2.1328 -0.0001 30 1 5.8964 -1.0357 -1.8863 31 1 5.9643 0.7393 -2.0181 32 1 8.2184 0.7502 -1.0244 33 1 8.1903 -0.3298 -2.4411 34 1 9.3582 -1.3665 -0.4834 35 1 7.9159 -2.2887 -0.9730 36 1 6.7125 -0.0385 4.3130 37 1 4.1255 -2.1318 -0.0102 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310572804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:52 Heat of formation + Delta-G solvation = -86.215779 kcal Electronic energy + Delta-G solvation = -20348.179672 eV Core-core repulsion = 17197.014480 eV Total energy + Delta-G solvation = -3151.165192 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.55527 -39.24543 -37.72998 -33.39783 -32.51454 -32.10243 -30.17635 -29.88051 -26.84477 -25.33022 -23.11037 -22.39992 -22.14608 -20.48084 -18.99512 -16.85669 -16.57721 -15.85003 -15.40420 -15.35556 -14.82897 -14.52835 -14.09221 -13.66791 -13.49540 -13.35737 -13.21632 -12.89193 -12.73116 -12.26885 -11.95789 -11.81059 -11.47413 -11.24960 -11.15487 -10.92936 -10.71915 -10.65102 -10.36891 -10.21054 -9.75356 -9.66886 -8.79849 -8.51578 -8.45177 -8.20369 -7.75166 -6.00903 -4.16859 1.51065 1.61266 3.26830 3.33529 3.34627 3.92974 4.37891 4.58175 4.88842 4.97330 5.09138 5.31263 5.35737 5.59651 5.62729 5.66666 5.74789 5.79441 5.82923 5.94344 6.03251 6.18861 6.31066 6.34817 6.39863 6.46844 6.53156 6.60360 6.67391 6.80556 6.92742 6.98736 7.01511 7.17692 7.30518 7.66706 7.84772 8.18582 8.78666 9.03417 9.55525 11.03143 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.020429 B = 0.006583 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.264359 B = 4252.180682 C = 4792.387721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.136 4.136 3 C -0.098 4.098 4 C -0.122 4.122 5 C -0.031 4.031 6 C 0.141 3.859 7 H 0.076 0.924 8 C -0.137 4.137 9 C -0.108 4.108 10 C -0.143 4.143 11 C 0.212 3.788 12 H 0.062 0.938 13 C -0.560 4.560 14 H 0.057 0.943 15 C 0.080 3.920 16 N -0.856 5.856 17 Si 0.882 3.118 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 O -0.366 6.366 22 C -0.121 4.121 23 C 0.088 3.912 24 F -0.145 7.145 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.041 0.959 36 H 0.261 0.739 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.263 2.082 -8.077 11.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C -0.116 4.116 4 C -0.140 4.140 5 C -0.031 4.031 6 C 0.082 3.918 7 H 0.094 0.906 8 C -0.175 4.175 9 C -0.146 4.146 10 C -0.180 4.180 11 C 0.157 3.843 12 H 0.080 0.920 13 C -0.598 4.598 14 H 0.075 0.925 15 C -0.126 4.126 16 N -0.492 5.492 17 Si 0.709 3.291 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.201 1.201 21 O -0.285 6.285 22 C -0.140 4.140 23 C 0.069 3.931 24 F -0.124 7.124 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.517 1.859 -7.810 11.704 hybrid contribution 0.500 0.864 0.466 1.101 sum -8.017 2.723 -7.344 11.208 Atomic orbital electron populations 1.20647 0.90801 1.02844 1.02158 1.19791 0.96475 0.92142 1.05282 1.20752 0.93887 0.96605 1.00372 1.21039 0.93841 0.98023 1.01090 1.19872 0.96191 0.91932 0.95113 1.20394 0.86710 0.94484 0.90229 0.90624 1.22117 0.96834 1.00874 0.97625 1.21443 0.94811 1.00365 0.97957 1.22189 1.00218 0.96399 0.99242 1.19725 0.77755 0.97421 0.89427 0.92021 1.21485 1.28998 1.08786 1.00553 0.92493 1.25030 0.94259 0.96459 0.96889 1.70042 1.30730 1.36950 1.11471 0.86839 0.79438 0.84200 0.78584 1.20182 1.21222 1.20142 1.87930 1.24501 1.45322 1.70716 1.21034 0.91282 1.00438 1.01216 1.17569 0.90129 0.80634 1.04813 1.91431 1.80424 1.46366 1.94157 0.91397 0.91577 0.91383 0.85580 0.85557 0.92560 0.92610 0.91225 0.93915 0.92496 0.94038 0.92916 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.84 36.01 0.35 -0.89 16 2 C -0.14 -2.04 5.89 -104.55 -0.62 -2.66 16 3 C -0.10 -1.42 9.70 -39.59 -0.38 -1.80 16 4 C -0.12 -2.01 9.68 -39.57 -0.38 -2.39 16 5 C -0.03 -0.59 5.00 -104.63 -0.52 -1.11 16 6 C 0.14 2.97 2.58 -27.83 -0.07 2.90 16 7 H 0.08 1.77 7.00 -51.93 -0.36 1.40 16 8 C -0.14 -2.48 5.40 -26.59 -0.14 -2.63 16 9 C -0.11 -2.00 5.78 -26.55 -0.15 -2.15 16 10 C -0.14 -2.91 5.59 -26.59 -0.15 -3.06 16 11 C 0.21 5.24 3.16 -27.83 -0.09 5.15 16 12 H 0.06 1.66 8.14 -51.93 -0.42 1.23 16 13 C -0.56 -14.69 6.60 -34.44 -0.23 -14.92 16 14 H 0.06 1.46 6.87 -52.49 -0.36 1.10 16 15 C 0.08 2.16 5.40 -17.82 -0.10 2.07 16 16 N -0.86 -24.56 12.84 55.43 0.71 -23.85 16 17 Si 0.88 20.69 29.54 -169.99 -5.02 15.67 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 O -0.37 -9.02 8.79 -35.23 -0.31 -9.33 16 22 C -0.12 -2.28 9.33 -39.52 -0.37 -2.65 16 23 C 0.09 1.51 7.24 -39.42 -0.29 1.22 16 24 F -0.15 -2.46 16.48 2.25 0.04 -2.42 16 25 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 26 H 0.07 0.77 7.64 -51.93 -0.40 0.37 16 27 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 28 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.36 6.86 -51.93 -0.36 1.00 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.14 2.71 7.64 -52.49 -0.40 2.31 16 LS Contribution 305.67 15.07 4.61 4.61 Total: -1.00 -28.58 305.67 -8.35 -36.93 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.24 Total: 1.32 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -3.14 Total: -22.92 kcal Atomic # 7 Polarization: -24.56 SS G_CDS: 0.71 Total: -23.85 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.31 Total: -9.33 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.58 -8.35 -36.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310572804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.287 kcal (2) G-P(sol) polarization free energy of solvation -28.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds