Wall clock time and date at job start Mon Mar 30 2020 07:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38219 * 120.01233 * 2 1 4 4 C 1.38223 * 120.02319 * 180.02562 * 3 2 1 5 5 C 1.38270 * 120.05282 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.98607 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47869 * 24.97769 * 6 5 4 8 8 C 1.53097 * 109.48920 * 264.95108 * 6 5 4 9 9 C 1.53180 * 109.21119 * 182.43770 * 8 6 5 10 10 C 1.53177 * 109.03525 * 56.88485 * 9 8 6 11 11 C 1.53098 * 109.21356 * 303.11207 * 10 9 8 12 12 H 1.08999 * 109.47354 * 177.55660 * 11 10 9 13 13 C 1.50698 * 109.48057 * 297.58191 * 11 10 9 14 14 H 1.07997 * 119.99949 * 0.02562 * 13 11 10 15 15 C 1.37877 * 119.99914 * 180.02562 * 13 11 10 16 16 N 1.31515 * 120.00021 * 359.97438 * 15 13 11 17 17 Si 1.86791 * 119.99931 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47657 * 59.99753 * 17 15 13 19 19 H 1.48501 * 109.47262 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47241 * 299.99850 * 17 15 13 21 21 O 1.42898 * 109.48125 * 145.00394 * 6 5 4 22 22 C 1.38173 * 120.02351 * 0.27626 * 5 4 3 23 23 C 1.38442 * 120.01292 * 180.02562 * 2 1 3 24 24 F 1.35096 * 120.02404 * 0.02562 * 23 2 1 25 25 H 1.09010 * 109.46476 * 90.00491 * 1 2 3 26 26 H 1.08998 * 109.47157 * 210.00083 * 1 2 3 27 27 H 1.08996 * 109.47412 * 330.00584 * 1 2 3 28 28 H 1.08001 * 119.98875 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.97041 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.52138 * 302.30791 * 8 6 5 31 31 H 1.09003 * 109.52113 * 62.49701 * 8 6 5 32 32 H 1.09005 * 109.49724 * 297.04659 * 9 8 6 33 33 H 1.09005 * 109.59319 * 176.78366 * 9 8 6 34 34 H 1.09002 * 109.52487 * 183.17418 * 10 9 8 35 35 H 1.09004 * 109.52023 * 63.05037 * 10 9 8 36 36 H 0.96998 * 119.99824 * 179.97438 * 16 15 13 37 37 H 1.08002 * 120.01168 * 179.72559 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2733 0.0004 -0.0005 6 6 5.7803 0.0025 -0.0005 7 1 6.1425 0.9344 0.4334 8 6 6.2912 -0.1238 -1.4382 9 6 7.8219 -0.1824 -1.4258 10 6 8.2699 -1.3516 -0.5434 11 6 7.6826 -1.1778 0.8597 12 1 7.9630 -2.0297 1.4791 13 6 8.2180 0.0892 1.4753 14 1 8.9077 0.7090 0.9217 15 6 7.8273 0.4572 2.7453 16 7 6.9870 -0.2973 3.4193 17 14 8.4905 2.0280 3.5081 18 1 8.1069 3.1884 2.6645 19 1 7.9217 2.1957 4.8696 20 1 9.9708 1.9486 3.5970 21 8 6.2584 -1.1005 0.7721 22 6 3.5842 -1.1972 -0.0058 23 6 2.1995 -1.1988 -0.0005 24 9 1.5248 -2.3692 -0.0016 25 1 -0.3633 -0.0001 -1.0278 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6584 2.1322 -0.0004 29 1 4.1199 2.1328 -0.0001 30 1 5.8964 -1.0357 -1.8863 31 1 5.9643 0.7393 -2.0181 32 1 8.2184 0.7502 -1.0244 33 1 8.1903 -0.3298 -2.4411 34 1 9.3582 -1.3665 -0.4834 35 1 7.9159 -2.2887 -0.9730 36 1 6.7125 -0.0385 4.3130 37 1 4.1255 -2.1318 -0.0102 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310572804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:51 Heat of formation + Delta-G solvation = -100.629929 kcal Electronic energy + Delta-G solvation = -20348.804717 eV Core-core repulsion = 17197.014480 eV Total energy + Delta-G solvation = -3151.790236 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.88634 -40.71039 -39.28326 -34.97513 -34.18259 -33.88561 -31.51511 -31.38004 -28.33939 -27.05802 -24.64972 -23.80962 -23.70962 -21.85461 -20.73374 -18.46572 -18.17668 -17.35891 -16.79070 -16.68748 -16.62734 -16.09611 -15.86082 -15.26620 -15.06958 -14.67637 -14.51328 -14.19648 -14.12650 -13.64902 -13.45615 -13.22334 -13.01241 -12.76995 -12.68302 -12.55393 -12.40745 -12.22679 -12.01340 -11.77474 -11.50307 -11.30097 -10.71409 -10.47500 -9.84831 -9.71433 -9.31683 -8.07612 -6.29469 0.20471 0.31371 1.40347 1.41418 1.48984 2.40966 2.61756 3.12590 3.28784 3.48593 3.79886 3.89315 4.07212 4.17780 4.25032 4.28212 4.45145 4.50066 4.58461 4.71065 4.76819 4.79779 4.86195 4.95874 5.03282 5.12613 5.15367 5.22736 5.25450 5.32542 5.37309 5.42045 5.48768 5.59328 5.74916 5.82239 6.01064 6.17081 6.77679 7.14462 7.47899 8.96361 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.020429 B = 0.006583 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.264359 B = 4252.180682 C = 4792.387721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.128 4.128 3 C -0.086 4.086 4 C -0.125 4.125 5 C -0.057 4.057 6 C 0.140 3.860 7 H 0.048 0.952 8 C -0.130 4.130 9 C -0.104 4.104 10 C -0.136 4.136 11 C 0.205 3.795 12 H 0.023 0.977 13 C -0.561 4.561 14 H 0.061 0.939 15 C 0.029 3.971 16 N -0.897 5.897 17 Si 0.945 3.055 18 H -0.266 1.266 19 H -0.289 1.289 20 H -0.269 1.269 21 O -0.391 6.391 22 C -0.141 4.141 23 C 0.072 3.928 24 F -0.148 7.148 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.169 0.831 29 H 0.141 0.859 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.258 0.742 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.487 4.319 -9.476 14.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.129 4.129 3 C -0.104 4.104 4 C -0.143 4.143 5 C -0.057 4.057 6 C 0.082 3.918 7 H 0.066 0.934 8 C -0.168 4.168 9 C -0.142 4.142 10 C -0.174 4.174 11 C 0.149 3.851 12 H 0.041 0.959 13 C -0.599 4.599 14 H 0.079 0.921 15 C -0.173 4.173 16 N -0.534 5.534 17 Si 0.770 3.230 18 H -0.191 1.191 19 H -0.214 1.214 20 H -0.194 1.194 21 O -0.310 6.310 22 C -0.160 4.160 23 C 0.053 3.947 24 F -0.127 7.127 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.112 0.888 28 H 0.187 0.813 29 H 0.159 0.841 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.729 4.099 -9.229 14.023 hybrid contribution 0.818 0.133 0.883 1.211 sum -8.911 4.232 -8.346 12.921 Atomic orbital electron populations 1.20760 0.87929 1.03952 1.03723 1.20261 0.98539 0.91201 1.02908 1.21198 0.93013 0.98074 0.98107 1.21289 0.95084 0.97460 1.00515 1.19830 0.95134 0.93166 0.97612 1.20453 0.88266 0.91814 0.91242 0.93404 1.22066 0.96576 1.02186 0.95933 1.21432 0.94962 0.98621 0.99151 1.22071 1.00293 0.97986 0.97080 1.19632 0.78453 0.95509 0.91488 0.95939 1.21765 1.28405 1.09066 1.00648 0.92109 1.25791 0.94515 0.99475 0.97508 1.70202 1.32606 1.38919 1.11662 0.85832 0.78948 0.80684 0.77541 1.19051 1.21447 1.19417 1.87858 1.24163 1.46904 1.72111 1.20911 0.92345 0.99669 1.03062 1.17732 0.89658 0.81592 1.05752 1.91417 1.80245 1.46729 1.94273 0.89454 0.91973 0.88831 0.81339 0.84117 0.92242 0.89970 0.92330 0.90492 0.91909 0.93152 0.93327 0.86540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.08 9.84 71.24 0.70 -1.38 16 2 C -0.13 -3.52 5.89 -19.82 -0.12 -3.64 16 3 C -0.09 -2.20 9.70 22.26 0.22 -1.98 16 4 C -0.13 -3.93 9.68 22.27 0.22 -3.72 16 5 C -0.06 -2.20 5.00 -19.87 -0.10 -2.30 16 6 C 0.14 6.05 2.58 29.88 0.08 6.12 16 7 H 0.05 2.29 7.00 -2.39 -0.02 2.27 16 8 C -0.13 -4.60 5.40 30.69 0.17 -4.43 16 9 C -0.10 -3.70 5.78 30.71 0.18 -3.52 16 10 C -0.14 -5.58 5.59 30.69 0.17 -5.41 16 11 C 0.21 10.54 3.16 29.88 0.09 10.63 16 12 H 0.02 1.30 8.14 -2.39 -0.02 1.29 16 13 C -0.56 -30.04 6.60 25.60 0.17 -29.87 16 14 H 0.06 3.14 6.87 -2.91 -0.02 3.12 16 15 C 0.03 1.62 5.40 84.65 0.46 2.08 16 16 N -0.90 -53.35 12.84 21.45 0.28 -53.08 16 17 Si 0.94 42.86 29.54 68.60 2.03 44.88 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 19 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 O -0.39 -20.19 8.79 -148.98 -1.31 -21.50 16 22 C -0.14 -5.48 9.33 22.31 0.21 -5.27 16 23 C 0.07 2.44 7.24 22.38 0.16 2.61 16 24 F -0.15 -5.02 16.48 44.97 0.74 -4.28 16 25 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.06 1.28 7.64 -2.39 -0.02 1.26 16 27 H 0.09 1.37 8.09 -2.39 -0.02 1.35 16 28 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 29 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.06 2.21 6.86 -2.38 -0.02 2.19 16 33 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.12 4.89 7.64 -2.91 -0.02 4.87 16 Total: -1.00 -64.25 305.67 5.39 -58.86 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 1.05 Total: 15.19 kcal Atomic # 6 Polarization: -42.68 SS G_CDS: 2.60 Total: -40.08 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.28 Total: -53.08 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -1.31 Total: -21.50 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.74 Total: -4.28 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -64.25 5.39 -58.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310572804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.771 kcal (2) G-P(sol) polarization free energy of solvation -64.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds