Wall clock time and date at job start Mon Mar 30 2020 07:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38218 * 120.01742 * 2 1 4 4 C 1.38222 * 120.02976 * 179.72431 * 3 2 1 5 5 C 1.38271 * 120.04657 * 0.50903 * 4 3 2 6 6 C 1.50698 * 119.98315 * 179.77151 * 5 4 3 7 7 H 1.09006 * 109.48079 * 204.74447 * 6 5 4 8 8 C 1.53089 * 109.48550 * 84.72195 * 6 5 4 9 9 C 1.53177 * 109.16584 * 182.40618 * 8 6 5 10 10 C 1.53179 * 109.10692 * 56.93603 * 9 8 6 11 11 C 1.53100 * 109.15719 * 303.14927 * 10 9 8 12 12 H 1.08996 * 109.41956 * 297.49202 * 11 10 9 13 13 C 1.50703 * 109.48291 * 177.50092 * 11 10 9 14 14 H 1.08000 * 119.99765 * 359.97438 * 13 11 10 15 15 C 1.37878 * 119.99841 * 179.97438 * 13 11 10 16 16 N 1.31504 * 120.00181 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99644 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47247 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47035 * 120.00315 * 17 15 13 20 20 H 1.48504 * 109.47327 * 240.00205 * 17 15 13 21 21 O 1.42902 * 109.48210 * 324.77524 * 6 5 4 22 22 C 1.38177 * 120.02562 * 359.48896 * 5 4 3 23 23 C 1.38440 * 120.01181 * 179.97438 * 2 1 3 24 24 F 1.35099 * 120.02508 * 0.02562 * 23 2 1 25 25 H 1.09004 * 109.47040 * 270.02245 * 1 2 3 26 26 H 1.08999 * 109.47018 * 30.02066 * 1 2 3 27 27 H 1.09000 * 109.47160 * 150.02023 * 1 2 3 28 28 H 1.08002 * 119.98272 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.97848 * 180.25718 * 4 3 2 30 30 H 1.08999 * 109.52464 * 62.50181 * 8 6 5 31 31 H 1.09000 * 109.52446 * 302.31626 * 8 6 5 32 32 H 1.09002 * 109.54459 * 176.84823 * 9 8 6 33 33 H 1.08999 * 109.54390 * 297.02744 * 9 8 6 34 34 H 1.08997 * 109.52685 * 62.97182 * 10 9 8 35 35 H 1.08999 * 109.52226 * 183.15941 * 10 9 8 36 36 H 0.97003 * 120.00402 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.00868 * 180.23340 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1968 0.0000 4 6 3.5807 1.1971 0.0058 5 6 4.2733 0.0004 0.0009 6 6 5.7803 0.0024 0.0020 7 1 6.1454 -0.9285 -0.4321 8 6 6.2897 0.1294 1.4400 9 6 7.8202 0.1913 1.4277 10 6 8.2676 1.3620 0.5470 11 6 7.6801 1.1884 -0.8561 12 1 8.0700 0.2732 -1.3016 13 6 8.0651 2.3677 -1.7117 14 1 8.6680 3.1619 -1.2968 15 6 7.6476 2.4327 -3.0242 16 7 6.9131 1.4659 -3.5292 17 14 8.1255 3.8942 -4.0849 18 1 8.9489 4.8373 -3.2863 19 1 8.9092 3.4217 -5.2545 20 1 6.8989 4.5851 -4.5574 21 8 6.2559 1.1070 -0.7698 22 6 3.5842 -1.1973 0.0009 23 6 2.1995 -1.1988 0.0005 24 9 1.5247 -2.3692 0.0005 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6585 2.1321 -0.0004 29 1 4.1201 2.1327 0.0100 30 1 5.9648 -0.7349 2.0193 31 1 5.8919 1.0398 1.8883 32 1 8.1874 0.3380 2.4435 33 1 8.2196 -0.7402 1.0266 34 1 7.9111 2.2981 0.9766 35 1 9.3559 1.3783 0.4881 36 1 6.6191 1.5118 -4.4525 37 1 4.1255 -2.1319 0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310572805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:54 Heat of formation + Delta-G solvation = -87.333034 kcal Electronic energy + Delta-G solvation = -20016.423314 eV Core-core repulsion = 16865.209674 eV Total energy + Delta-G solvation = -3151.213640 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.66785 -39.30310 -37.70570 -33.55544 -32.66713 -32.21324 -30.21607 -29.95897 -26.99120 -25.31260 -23.18374 -22.61053 -21.81778 -20.53356 -19.24684 -17.00711 -16.54287 -16.16978 -15.46293 -15.35211 -14.73752 -14.56632 -14.32040 -13.95953 -13.73140 -13.33657 -13.18390 -12.93482 -12.76020 -12.27282 -12.25008 -11.92998 -11.45165 -11.13231 -11.07526 -10.98732 -10.76747 -10.68888 -10.37012 -10.28848 -9.89359 -9.67707 -8.91603 -8.63591 -8.50994 -8.23026 -7.85483 -6.03422 -4.16106 1.47046 1.52659 3.28446 3.36836 3.40124 3.87707 4.39024 4.42627 4.79159 4.93259 5.08894 5.27638 5.34510 5.48087 5.50493 5.59596 5.63683 5.67650 5.80420 5.81990 5.90360 6.05289 6.08625 6.20443 6.29403 6.38040 6.39073 6.55967 6.60649 6.69579 6.80607 6.82684 6.87066 7.02264 7.23896 7.48782 7.87454 8.25139 8.74327 9.07789 9.54558 11.03848 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.020269 B = 0.005896 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.059546 B = 4747.665808 C = 5578.918220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.132 4.132 3 C -0.099 4.099 4 C -0.091 4.091 5 C -0.034 4.034 6 C 0.121 3.879 7 H 0.052 0.948 8 C -0.139 4.139 9 C -0.120 4.120 10 C -0.144 4.144 11 C 0.219 3.781 12 H 0.014 0.986 13 C -0.527 4.527 14 H 0.065 0.935 15 C 0.079 3.921 16 N -0.857 5.857 17 Si 0.890 3.110 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.282 1.282 21 O -0.347 6.347 22 C -0.147 4.147 23 C 0.087 3.913 24 F -0.146 7.146 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.128 0.872 29 H 0.138 0.862 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.260 0.740 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.018 -3.429 8.459 12.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.133 4.133 3 C -0.117 4.117 4 C -0.109 4.109 5 C -0.034 4.034 6 C 0.061 3.939 7 H 0.070 0.930 8 C -0.177 4.177 9 C -0.158 4.158 10 C -0.182 4.182 11 C 0.164 3.836 12 H 0.032 0.968 13 C -0.564 4.564 14 H 0.083 0.917 15 C -0.128 4.128 16 N -0.493 5.493 17 Si 0.718 3.282 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.208 1.208 21 O -0.266 6.266 22 C -0.165 4.165 23 C 0.068 3.932 24 F -0.124 7.124 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.146 0.854 29 H 0.156 0.844 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.252 -3.410 8.210 12.129 hybrid contribution 0.268 0.279 -0.554 0.676 sum -7.984 -3.132 7.656 11.496 Atomic orbital electron populations 1.20660 0.90731 1.02922 1.02227 1.19826 0.96547 0.92116 1.04796 1.20916 0.94238 0.96658 0.99853 1.21173 0.93290 0.99110 0.97331 1.19688 0.95636 0.92096 0.95994 1.20620 0.88362 0.93520 0.91355 0.93018 1.22146 0.96522 1.01587 0.97396 1.21620 0.95049 0.99678 0.99444 1.22264 1.00267 0.96911 0.98765 1.19733 0.77566 0.97114 0.89208 0.96823 1.21027 1.33182 1.07344 0.94824 0.91706 1.25071 0.93988 0.95813 0.97907 1.70042 1.33515 1.31510 1.14256 0.86579 0.78350 0.82914 0.80378 1.19600 1.20920 1.20842 1.88378 1.24995 1.43888 1.69372 1.20883 0.91968 0.99266 1.04425 1.17378 0.89812 0.80672 1.05367 1.91431 1.80430 1.46316 1.94252 0.91324 0.91235 0.91596 0.85435 0.84426 0.92481 0.91595 0.92961 0.92605 0.92446 0.92380 0.92989 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.84 36.01 0.35 -0.88 16 2 C -0.13 -1.94 5.89 -104.55 -0.62 -2.55 16 3 C -0.10 -1.48 9.70 -39.59 -0.38 -1.86 16 4 C -0.09 -1.61 9.35 -39.58 -0.37 -1.98 16 5 C -0.03 -0.62 5.00 -104.63 -0.52 -1.15 16 6 C 0.12 2.42 2.85 -27.84 -0.08 2.34 16 7 H 0.05 1.06 8.05 -51.93 -0.42 0.65 16 8 C -0.14 -2.36 5.40 -26.59 -0.14 -2.51 16 9 C -0.12 -2.06 6.02 -26.55 -0.16 -2.22 16 10 C -0.14 -2.96 5.36 -26.59 -0.14 -3.10 16 11 C 0.22 5.50 2.50 -27.83 -0.07 5.43 16 12 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 13 C -0.53 -14.48 8.79 -34.44 -0.30 -14.78 16 14 H 0.06 1.74 7.74 -52.49 -0.41 1.33 16 15 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 16 N -0.86 -25.02 12.84 55.43 0.71 -24.30 16 17 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 O -0.35 -8.59 8.59 -35.23 -0.30 -8.89 16 22 C -0.15 -2.45 9.66 -39.52 -0.38 -2.83 16 23 C 0.09 1.38 7.24 -39.42 -0.29 1.10 16 24 F -0.15 -2.25 16.48 2.25 0.04 -2.22 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 27 H 0.07 0.74 7.64 -51.93 -0.40 0.34 16 28 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.14 2.56 7.63 -52.49 -0.40 2.15 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 310.49 15.07 4.68 4.68 Total: -1.00 -29.49 310.49 -8.50 -37.99 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.40 Total: -0.41 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -3.20 Total: -22.90 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.71 Total: -24.30 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.30 Total: -8.89 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.49 -8.50 -37.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310572805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.346 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds