Wall clock time and date at job start Mon Mar 30 2020 07:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38218 * 120.01742 * 2 1 4 4 C 1.38222 * 120.02976 * 179.72431 * 3 2 1 5 5 C 1.38271 * 120.04657 * 0.50903 * 4 3 2 6 6 C 1.50698 * 119.98315 * 179.77151 * 5 4 3 7 7 H 1.09006 * 109.48079 * 204.74447 * 6 5 4 8 8 C 1.53089 * 109.48550 * 84.72195 * 6 5 4 9 9 C 1.53177 * 109.16584 * 182.40618 * 8 6 5 10 10 C 1.53179 * 109.10692 * 56.93603 * 9 8 6 11 11 C 1.53100 * 109.15719 * 303.14927 * 10 9 8 12 12 H 1.08996 * 109.41956 * 297.49202 * 11 10 9 13 13 C 1.50703 * 109.48291 * 177.50092 * 11 10 9 14 14 H 1.08000 * 119.99765 * 359.97438 * 13 11 10 15 15 C 1.37878 * 119.99841 * 179.97438 * 13 11 10 16 16 N 1.31504 * 120.00181 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99644 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47247 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47035 * 120.00315 * 17 15 13 20 20 H 1.48504 * 109.47327 * 240.00205 * 17 15 13 21 21 O 1.42902 * 109.48210 * 324.77524 * 6 5 4 22 22 C 1.38177 * 120.02562 * 359.48896 * 5 4 3 23 23 C 1.38440 * 120.01181 * 179.97438 * 2 1 3 24 24 F 1.35099 * 120.02508 * 0.02562 * 23 2 1 25 25 H 1.09004 * 109.47040 * 270.02245 * 1 2 3 26 26 H 1.08999 * 109.47018 * 30.02066 * 1 2 3 27 27 H 1.09000 * 109.47160 * 150.02023 * 1 2 3 28 28 H 1.08002 * 119.98272 * 359.97438 * 3 2 1 29 29 H 1.07998 * 119.97848 * 180.25718 * 4 3 2 30 30 H 1.08999 * 109.52464 * 62.50181 * 8 6 5 31 31 H 1.09000 * 109.52446 * 302.31626 * 8 6 5 32 32 H 1.09002 * 109.54459 * 176.84823 * 9 8 6 33 33 H 1.08999 * 109.54390 * 297.02744 * 9 8 6 34 34 H 1.08997 * 109.52685 * 62.97182 * 10 9 8 35 35 H 1.08999 * 109.52226 * 183.15941 * 10 9 8 36 36 H 0.97003 * 120.00402 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.00868 * 180.23340 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1968 0.0000 4 6 3.5807 1.1971 0.0058 5 6 4.2733 0.0004 0.0009 6 6 5.7803 0.0024 0.0020 7 1 6.1454 -0.9285 -0.4321 8 6 6.2897 0.1294 1.4400 9 6 7.8202 0.1913 1.4277 10 6 8.2676 1.3620 0.5470 11 6 7.6801 1.1884 -0.8561 12 1 8.0700 0.2732 -1.3016 13 6 8.0651 2.3677 -1.7117 14 1 8.6680 3.1619 -1.2968 15 6 7.6476 2.4327 -3.0242 16 7 6.9131 1.4659 -3.5292 17 14 8.1255 3.8942 -4.0849 18 1 8.9489 4.8373 -3.2863 19 1 8.9092 3.4217 -5.2545 20 1 6.8989 4.5851 -4.5574 21 8 6.2559 1.1070 -0.7698 22 6 3.5842 -1.1973 0.0009 23 6 2.1995 -1.1988 0.0005 24 9 1.5247 -2.3692 0.0005 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6585 2.1321 -0.0004 29 1 4.1201 2.1327 0.0100 30 1 5.9648 -0.7349 2.0193 31 1 5.8919 1.0398 1.8883 32 1 8.1874 0.3380 2.4435 33 1 8.2196 -0.7402 1.0266 34 1 7.9111 2.2981 0.9766 35 1 9.3559 1.3783 0.4881 36 1 6.6191 1.5118 -4.4525 37 1 4.1255 -2.1319 0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310572805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:54 Heat of formation + Delta-G solvation = -102.297316 kcal Electronic energy + Delta-G solvation = -20017.072214 eV Core-core repulsion = 16865.209674 eV Total energy + Delta-G solvation = -3151.862540 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.90491 -40.72657 -39.24054 -35.20933 -34.24739 -33.95598 -31.61357 -31.41073 -28.47436 -26.99035 -24.69518 -23.93846 -23.45594 -21.90977 -20.84120 -18.77103 -18.11555 -17.54721 -16.74874 -16.69185 -16.53550 -16.24848 -15.95268 -15.36151 -15.22518 -14.65090 -14.48233 -14.24876 -14.12946 -13.97150 -13.42448 -13.25676 -12.90160 -12.75378 -12.69495 -12.49440 -12.35627 -12.22434 -12.04763 -11.81005 -11.71621 -11.28581 -10.87331 -10.56998 -9.92917 -9.74290 -9.36916 -8.14271 -6.34634 0.19538 0.24486 1.40665 1.42133 1.54378 2.40848 2.57799 2.96032 3.22549 3.55442 3.78463 3.91126 3.97922 4.08475 4.12901 4.24284 4.29642 4.42677 4.47184 4.54514 4.69224 4.77690 4.81507 4.87879 4.96039 5.04740 5.09011 5.15012 5.19172 5.22078 5.27876 5.29719 5.43603 5.53876 5.67803 5.78697 5.97505 6.21917 6.68143 7.18828 7.41720 8.93304 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.020269 B = 0.005896 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.059546 B = 4747.665808 C = 5578.918220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.125 4.125 3 C -0.093 4.093 4 C -0.108 4.108 5 C -0.056 4.056 6 C 0.115 3.885 7 H 0.036 0.964 8 C -0.130 4.130 9 C -0.115 4.115 10 C -0.137 4.137 11 C 0.215 3.785 12 H -0.022 1.022 13 C -0.549 4.549 14 H 0.066 0.934 15 C 0.026 3.974 16 N -0.896 5.896 17 Si 0.959 3.041 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.281 1.281 21 O -0.374 6.374 22 C -0.152 4.152 23 C 0.079 3.921 24 F -0.142 7.142 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.158 0.842 29 H 0.120 0.880 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.260 0.740 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.245 -2.917 9.589 13.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.126 4.126 5 C -0.057 4.057 6 C 0.056 3.944 7 H 0.054 0.946 8 C -0.168 4.168 9 C -0.153 4.153 10 C -0.175 4.175 11 C 0.160 3.840 12 H -0.005 1.005 13 C -0.586 4.586 14 H 0.084 0.916 15 C -0.176 4.176 16 N -0.533 5.533 17 Si 0.784 3.216 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.207 1.207 21 O -0.294 6.294 22 C -0.171 4.171 23 C 0.060 3.940 24 F -0.121 7.121 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.176 0.824 29 H 0.138 0.862 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.473 -2.901 9.357 13.628 hybrid contribution 0.586 0.057 -0.886 1.063 sum -8.887 -2.845 8.471 12.603 Atomic orbital electron populations 1.20767 0.87927 1.03984 1.03778 1.20240 0.98548 0.91236 1.02587 1.21188 0.93108 0.98226 0.98540 1.21157 0.94683 0.98114 0.98665 1.19606 0.94676 0.93153 0.98230 1.20788 0.89773 0.91242 0.92550 0.94625 1.22080 0.96351 1.02857 0.95473 1.21609 0.95102 0.98106 1.00453 1.22113 1.00292 0.98412 0.96638 1.19592 0.78255 0.94685 0.91495 1.00458 1.21457 1.33345 1.07953 0.95822 0.91600 1.25915 0.93888 0.98547 0.99298 1.70183 1.35017 1.33574 1.14536 0.85506 0.78067 0.79476 0.78555 1.18522 1.20293 1.20677 1.88261 1.24400 1.45739 1.70951 1.20953 0.92675 0.99038 1.04430 1.17504 0.89622 0.81368 1.05530 1.91438 1.80210 1.46220 1.94233 0.89383 0.89345 0.91423 0.82436 0.86193 0.89700 0.91477 0.89538 0.92437 0.92667 0.91842 0.93090 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.08 9.84 71.24 0.70 -1.38 16 2 C -0.13 -3.39 5.89 -19.82 -0.12 -3.51 16 3 C -0.09 -2.63 9.70 22.26 0.22 -2.41 16 4 C -0.11 -3.83 9.35 22.27 0.21 -3.62 16 5 C -0.06 -2.10 5.00 -19.87 -0.10 -2.20 16 6 C 0.12 4.73 2.85 29.88 0.09 4.82 16 7 H 0.04 1.54 8.05 -2.38 -0.02 1.52 16 8 C -0.13 -4.32 5.40 30.68 0.17 -4.15 16 9 C -0.12 -3.80 6.02 30.71 0.18 -3.62 16 10 C -0.14 -5.62 5.36 30.69 0.16 -5.46 16 11 C 0.22 11.22 2.50 29.88 0.07 11.30 16 12 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 13 C -0.55 -30.99 8.79 25.60 0.23 -30.77 16 14 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 15 C 0.03 1.48 5.40 84.66 0.46 1.94 16 16 N -0.90 -54.08 12.84 21.45 0.28 -53.80 16 17 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 18 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 O -0.37 -19.24 8.59 -148.98 -1.28 -20.52 16 22 C -0.15 -5.05 9.66 22.31 0.22 -4.84 16 23 C 0.08 2.41 7.24 22.37 0.16 2.57 16 24 F -0.14 -4.17 16.48 44.97 0.74 -3.42 16 25 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.09 1.39 8.09 -2.39 -0.02 1.37 16 27 H 0.07 1.30 7.64 -2.39 -0.02 1.29 16 28 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 29 H 0.12 4.61 7.63 -2.91 -0.02 4.59 16 30 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 37 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -65.41 310.49 5.45 -59.96 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 1.05 Total: 13.13 kcal Atomic # 6 Polarization: -43.96 SS G_CDS: 2.64 Total: -41.32 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.28 Total: -53.80 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -1.28 Total: -20.52 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.74 Total: -3.42 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -65.41 5.45 -59.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310572805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.340 kcal (2) G-P(sol) polarization free energy of solvation -65.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds