Wall clock time and date at job start Mon Mar 30 2020 06:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46387 * 2 1 4 4 C 1.50697 * 109.47148 * 240.00238 * 2 1 3 5 5 H 1.08004 * 119.99697 * 239.99652 * 4 2 1 6 6 C 1.37875 * 120.00188 * 59.99908 * 4 2 1 7 7 N 1.31517 * 120.00220 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99907 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47232 * 89.99849 * 8 6 4 10 10 H 1.48505 * 109.46565 * 209.99548 * 8 6 4 11 11 H 1.48494 * 109.46800 * 329.99429 * 8 6 4 12 12 N 1.46494 * 109.47122 * 119.99854 * 2 1 3 13 13 C 1.46497 * 120.00134 * 60.00362 * 12 2 1 14 14 C 1.37708 * 120.00052 * 240.00372 * 12 2 1 15 15 N 1.30820 * 124.96393 * 180.02562 * 14 12 2 16 16 C 1.36207 * 108.68636 * 179.97438 * 15 14 12 17 17 C 1.40231 * 106.64080 * 0.02562 * 16 15 14 18 18 C 1.38572 * 119.84089 * 180.02562 * 17 16 15 19 19 C 1.38042 * 119.93931 * 359.97438 * 18 17 16 20 20 C 1.38615 * 120.47697 * 0.02562 * 19 18 17 21 21 C 1.37995 * 120.35818 * 0.25369 * 20 19 18 22 22 F 1.35102 * 120.15109 * 179.74570 * 21 20 19 23 23 O 1.34477 * 124.96215 * 359.97438 * 14 12 2 24 24 H 1.08998 * 109.47030 * 299.99641 * 1 2 3 25 25 H 1.08998 * 109.47310 * 60.00235 * 1 2 3 26 26 H 1.09003 * 109.46843 * 180.02562 * 1 2 3 27 27 H 0.96995 * 120.00331 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.47153 * 270.00204 * 13 12 2 29 29 H 1.09000 * 109.47430 * 29.99629 * 13 12 2 30 30 H 1.09001 * 109.47444 * 149.99893 * 13 12 2 31 31 H 1.07996 * 120.02877 * 180.02562 * 18 17 16 32 32 H 1.07998 * 119.76318 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.81720 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1616 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6294 -1.7581 -3.7121 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0931 1.4280 14 6 2.8100 -0.0213 2.1026 15 7 3.2982 -0.5414 3.1992 16 6 4.0299 0.4088 3.8448 17 6 3.9600 1.5702 3.0620 18 6 4.6179 2.7187 3.4720 19 6 5.3392 2.7167 4.6490 20 6 5.4118 1.5717 5.4269 21 6 4.7676 0.4174 5.0310 22 9 4.8455 -0.6976 5.7898 23 8 3.1950 1.2622 1.9894 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7081 1.1609 -3.4844 28 1 0.7376 -2.1444 1.9993 29 1 1.5296 -2.5969 0.4708 30 1 2.4630 -2.5818 1.9864 31 1 4.5658 3.6149 2.8716 32 1 5.8505 3.6135 4.9660 33 1 5.9795 1.5819 6.3457 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335794443.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:34 Heat of formation + Delta-G solvation = 4.235660 kcal Electronic energy + Delta-G solvation = -19576.677556 eV Core-core repulsion = 16325.894289 eV Total energy + Delta-G solvation = -3250.783267 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 264.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.57950 -42.67791 -37.81790 -36.70509 -34.23143 -32.93678 -30.08115 -29.87377 -28.57336 -26.29135 -25.41965 -23.00866 -22.57082 -21.29972 -20.22033 -17.92842 -17.53038 -16.73341 -16.50796 -16.22239 -15.60226 -15.15726 -15.14483 -14.91772 -13.99575 -13.65441 -13.52849 -12.95377 -12.72180 -11.93371 -11.84613 -11.82217 -11.63941 -11.55374 -11.25667 -11.14030 -10.97252 -10.84441 -10.46010 -10.31373 -9.92088 -9.58629 -8.96853 -8.64736 -8.37761 -7.04177 -6.26880 -4.37690 1.00646 1.32536 2.43611 2.99389 3.16929 3.24479 3.27826 3.65235 3.75126 4.23516 4.32151 4.69926 4.86357 5.04023 5.23160 5.34345 5.41123 5.72807 5.93494 6.02255 6.17060 6.22952 6.25338 6.31825 6.40852 6.54438 6.63716 6.74841 6.80235 7.15352 7.26641 7.51383 7.72756 7.87674 8.08280 8.33167 8.68146 9.30235 10.77444 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.029634 B = 0.005101 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.618196 B = 5487.748181 C = 5789.205264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.264 3.736 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.065 0.935 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.904 3.096 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.538 5.538 13 C 0.110 3.890 14 C 0.528 3.472 15 N -0.567 5.567 16 C 0.047 3.953 17 C 0.007 3.993 18 C -0.084 4.084 19 C -0.108 4.108 20 C -0.146 4.146 21 C 0.117 3.883 22 F -0.134 7.134 23 O -0.223 6.223 24 H 0.014 0.986 25 H 0.099 0.901 26 H 0.037 0.963 27 H 0.267 0.733 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.810 2.282 10.571 11.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.164 3.836 3 H 0.071 0.929 4 C -0.573 4.573 5 H 0.084 0.916 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.731 3.269 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.259 5.259 13 C -0.031 4.031 14 C 0.228 3.772 15 N -0.311 5.311 16 C -0.068 4.068 17 C -0.045 4.045 18 C -0.103 4.103 19 C -0.127 4.127 20 C -0.166 4.166 21 C 0.095 3.905 22 F -0.112 7.112 23 O -0.115 6.115 24 H 0.033 0.967 25 H 0.118 0.882 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.153 0.847 32 H 0.160 0.840 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.471 1.680 10.434 11.476 hybrid contribution 0.313 0.066 -1.098 1.144 sum 4.785 1.746 9.337 10.635 Atomic orbital electron populations 1.22136 0.97143 1.00270 1.01224 1.19203 0.91810 0.93248 0.79310 0.92896 1.21289 1.32595 1.13655 0.89789 0.91648 1.24892 0.94610 0.94882 0.99114 1.69857 1.35820 1.22407 1.24269 0.86397 0.79344 0.79328 0.81850 1.20331 1.20945 1.19763 1.46629 1.47461 1.11373 1.20427 1.21611 0.99871 0.79143 1.02496 1.21829 0.89058 0.78054 0.88308 1.71173 1.23031 1.28921 1.07957 1.19652 0.99728 0.91138 0.96302 1.19792 0.99387 0.97229 0.88108 1.19846 0.97843 0.95128 0.97493 1.20548 1.00314 0.98135 0.93735 1.20850 1.02254 0.91533 1.01950 1.16601 1.01004 0.83950 0.88910 1.91471 1.94787 1.50650 1.74326 1.84543 1.57036 1.28755 1.41179 0.96668 0.88248 0.94384 0.92338 0.93318 0.89357 0.91254 0.84652 0.84031 0.84205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.97 37.16 0.33 -3.01 16 2 C 0.26 6.32 2.71 -69.08 -0.19 6.13 16 3 H 0.05 1.40 7.17 -51.93 -0.37 1.03 16 4 C -0.53 -13.65 7.99 -34.44 -0.28 -13.93 16 5 H 0.07 1.67 7.33 -52.48 -0.38 1.28 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -23.50 11.32 55.43 0.63 -22.87 16 8 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.54 -11.66 2.83 -177.74 -0.50 -12.16 16 13 C 0.11 2.01 9.54 59.85 0.57 2.58 16 14 C 0.53 11.56 8.38 -87.62 -0.73 10.82 16 15 N -0.57 -12.10 10.58 -12.08 -0.13 -12.23 16 16 C 0.05 0.91 7.21 -84.63 -0.61 0.30 16 17 C 0.01 0.13 7.42 -38.71 -0.29 -0.16 16 18 C -0.08 -1.17 10.06 -39.53 -0.40 -1.57 16 19 C -0.11 -1.22 10.03 -39.51 -0.40 -1.61 16 20 C -0.15 -1.81 10.00 -39.53 -0.40 -2.21 16 21 C 0.12 1.93 7.34 -39.13 -0.29 1.64 16 22 F -0.13 -2.27 17.28 2.25 0.04 -2.23 16 23 O -0.22 -4.81 9.84 2.43 0.02 -4.78 16 24 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 26 H 0.04 0.80 7.67 -51.93 -0.40 0.40 16 27 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.58 7.02 -51.93 -0.36 1.22 16 30 H 0.07 1.22 7.60 -51.93 -0.39 0.82 16 31 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 289.29 15.07 4.36 4.36 Total: -1.00 -28.44 289.29 -6.84 -35.28 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -3.48 Total: -1.07 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -2.76 Total: 0.65 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.00 Total: -47.26 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: 0.02 Total: -4.78 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.44 -6.84 -35.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335794443.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.516 kcal (2) G-P(sol) polarization free energy of solvation -28.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds