Wall clock time and date at job start Mon Mar 30 2020 06:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46387 * 2 1 4 4 C 1.50697 * 109.47148 * 240.00238 * 2 1 3 5 5 H 1.08004 * 119.99697 * 239.99652 * 4 2 1 6 6 C 1.37875 * 120.00188 * 59.99908 * 4 2 1 7 7 N 1.31517 * 120.00220 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99907 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47232 * 89.99849 * 8 6 4 10 10 H 1.48505 * 109.46565 * 209.99548 * 8 6 4 11 11 H 1.48494 * 109.46800 * 329.99429 * 8 6 4 12 12 N 1.46494 * 109.47122 * 119.99854 * 2 1 3 13 13 C 1.46497 * 120.00134 * 60.00362 * 12 2 1 14 14 C 1.37708 * 120.00052 * 240.00372 * 12 2 1 15 15 N 1.30820 * 124.96393 * 180.02562 * 14 12 2 16 16 C 1.36207 * 108.68636 * 179.97438 * 15 14 12 17 17 C 1.40231 * 106.64080 * 0.02562 * 16 15 14 18 18 C 1.38572 * 119.84089 * 180.02562 * 17 16 15 19 19 C 1.38042 * 119.93931 * 359.97438 * 18 17 16 20 20 C 1.38615 * 120.47697 * 0.02562 * 19 18 17 21 21 C 1.37995 * 120.35818 * 0.25369 * 20 19 18 22 22 F 1.35102 * 120.15109 * 179.74570 * 21 20 19 23 23 O 1.34477 * 124.96215 * 359.97438 * 14 12 2 24 24 H 1.08998 * 109.47030 * 299.99641 * 1 2 3 25 25 H 1.08998 * 109.47310 * 60.00235 * 1 2 3 26 26 H 1.09003 * 109.46843 * 180.02562 * 1 2 3 27 27 H 0.96995 * 120.00331 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.47153 * 270.00204 * 13 12 2 29 29 H 1.09000 * 109.47430 * 29.99629 * 13 12 2 30 30 H 1.09001 * 109.47444 * 149.99893 * 13 12 2 31 31 H 1.07996 * 120.02877 * 180.02562 * 18 17 16 32 32 H 1.07998 * 119.76318 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.81720 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1616 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6294 -1.7581 -3.7121 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0931 1.4280 14 6 2.8100 -0.0213 2.1026 15 7 3.2982 -0.5414 3.1992 16 6 4.0299 0.4088 3.8448 17 6 3.9600 1.5702 3.0620 18 6 4.6179 2.7187 3.4720 19 6 5.3392 2.7167 4.6490 20 6 5.4118 1.5717 5.4269 21 6 4.7676 0.4174 5.0310 22 9 4.8455 -0.6976 5.7898 23 8 3.1950 1.2622 1.9894 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7081 1.1609 -3.4844 28 1 0.7376 -2.1444 1.9993 29 1 1.5296 -2.5969 0.4708 30 1 2.4630 -2.5818 1.9864 31 1 4.5658 3.6149 2.8716 32 1 5.8505 3.6135 4.9660 33 1 5.9795 1.5819 6.3457 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335794443.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:33 Heat of formation + Delta-G solvation = -13.358978 kcal Electronic energy + Delta-G solvation = -19577.440516 eV Core-core repulsion = 16325.894289 eV Total energy + Delta-G solvation = -3251.546227 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 264.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.85026 -44.11938 -39.16905 -38.22289 -35.78796 -34.72299 -31.59922 -31.24733 -29.98124 -27.77595 -27.36860 -24.28932 -24.05574 -22.73384 -21.83074 -19.30582 -18.99254 -18.51153 -17.98424 -17.68373 -17.00165 -16.67610 -16.46369 -16.35983 -15.54443 -15.14969 -14.94963 -14.51743 -14.11187 -13.65415 -13.19589 -13.09901 -13.07259 -12.95761 -12.78830 -12.76090 -12.71015 -12.53999 -12.26150 -12.13957 -11.44113 -11.36691 -10.62161 -10.44006 -9.60942 -8.56626 -8.19440 -6.39761 -0.23411 0.12342 0.98608 1.41358 1.43103 1.51921 1.54433 2.17599 2.40592 2.53524 3.05984 3.07551 3.37351 3.79299 4.07302 4.14074 4.27030 4.45557 4.56627 4.59831 4.67822 4.83042 4.88457 4.90051 4.96272 5.10494 5.16622 5.27835 5.34361 5.50221 5.57568 5.75539 5.91752 6.03984 6.35430 6.61801 6.86919 7.31724 8.81650 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.029634 B = 0.005101 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.618196 B = 5487.748181 C = 5789.205264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.272 3.728 3 H 0.018 0.982 4 C -0.547 4.547 5 H 0.060 0.940 6 C 0.026 3.974 7 N -0.911 5.911 8 Si 0.965 3.035 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.275 1.275 12 N -0.551 5.551 13 C 0.114 3.886 14 C 0.506 3.494 15 N -0.579 5.579 16 C 0.003 3.997 17 C -0.021 4.021 18 C -0.088 4.088 19 C -0.075 4.075 20 C -0.123 4.123 21 C 0.097 3.903 22 F -0.142 7.142 23 O -0.248 6.248 24 H 0.023 0.977 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.269 0.731 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.159 0.841 32 H 0.199 0.801 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.443 3.333 11.977 14.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.171 3.829 3 H 0.036 0.964 4 C -0.586 4.586 5 H 0.078 0.922 6 C -0.175 4.175 7 N -0.549 5.549 8 Si 0.790 3.210 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.200 1.200 12 N -0.273 5.273 13 C -0.027 4.027 14 C 0.205 3.795 15 N -0.324 5.324 16 C -0.110 4.110 17 C -0.072 4.072 18 C -0.106 4.106 19 C -0.093 4.093 20 C -0.143 4.143 21 C 0.075 3.925 22 F -0.121 7.121 23 O -0.140 6.140 24 H 0.042 0.958 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.177 0.823 32 H 0.216 0.784 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 6.128 2.737 11.889 13.652 hybrid contribution -0.036 -0.114 -1.327 1.332 sum 6.092 2.623 10.562 12.472 Atomic orbital electron populations 1.21943 0.96177 1.00741 1.00554 1.18865 0.92410 0.91563 0.80022 0.96423 1.21497 1.32675 1.13617 0.90778 0.92155 1.25625 0.94727 0.95489 1.01667 1.69968 1.36585 1.23428 1.24897 0.85449 0.78736 0.78368 0.78451 1.19298 1.20720 1.19958 1.46480 1.48417 1.12246 1.20172 1.21682 1.00610 0.77669 1.02703 1.21960 0.90101 0.78506 0.88908 1.71053 1.23311 1.30087 1.07970 1.20058 1.01580 0.91320 0.98053 1.20481 1.00358 0.98713 0.87600 1.20448 0.97052 0.94421 0.98718 1.21276 0.97416 0.99390 0.91264 1.21447 1.00046 0.89842 1.02936 1.17090 1.01843 0.85176 0.88394 1.91445 1.94920 1.51440 1.74301 1.84488 1.57921 1.28816 1.42800 0.95771 0.90303 0.93236 0.92202 0.91772 0.89346 0.91054 0.82298 0.78412 0.79893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.25 8.97 71.98 0.65 -5.60 16 2 C 0.27 13.59 2.71 44.25 0.12 13.71 16 3 H 0.02 1.00 7.17 -2.39 -0.02 0.98 16 4 C -0.55 -28.68 7.99 25.60 0.20 -28.48 16 5 H 0.06 3.15 7.33 -2.91 -0.02 3.13 16 6 C 0.03 1.35 5.30 84.65 0.45 1.80 16 7 N -0.91 -49.27 11.32 21.45 0.24 -49.03 16 8 Si 0.96 41.45 29.54 68.60 2.03 43.48 16 9 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 12 N -0.55 -24.87 2.83 -826.81 -2.34 -27.21 16 13 C 0.11 4.26 9.54 127.77 1.22 5.48 16 14 C 0.51 23.22 8.38 179.30 1.50 24.73 16 15 N -0.58 -25.68 10.58 -306.38 -3.24 -28.93 16 16 C 0.00 0.13 7.21 39.30 0.28 0.42 16 17 C -0.02 -0.77 7.42 22.83 0.17 -0.61 16 18 C -0.09 -2.21 10.06 22.30 0.22 -1.99 16 19 C -0.07 -1.29 10.03 22.31 0.22 -1.07 16 20 C -0.12 -2.51 10.00 22.30 0.22 -2.28 16 21 C 0.10 3.04 7.34 22.56 0.17 3.21 16 22 F -0.14 -4.71 17.28 44.97 0.78 -3.94 16 23 O -0.25 -11.20 9.84 -14.21 -0.14 -11.34 16 24 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.08 3.98 6.07 -2.39 -0.01 3.96 16 26 H 0.05 2.11 7.67 -2.39 -0.02 2.09 16 27 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 28 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.09 3.24 7.02 -2.39 -0.02 3.22 16 30 H 0.07 2.59 7.60 -2.39 -0.02 2.57 16 31 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 32 H 0.20 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.18 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -65.42 289.29 3.89 -61.54 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 1.13 Total: 6.12 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 5.43 Total: 9.31 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -5.34 Total: -105.17 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.14 Total: -11.34 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.78 Total: -3.94 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -65.42 3.89 -61.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335794443.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.176 kcal (2) G-P(sol) polarization free energy of solvation -65.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds