Wall clock time and date at job start Mon Mar 30 2020 06:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46901 * 2 1 4 4 C 1.50700 * 109.47405 * 119.99870 * 2 1 3 5 5 H 1.08005 * 120.00111 * 120.00119 * 4 2 1 6 6 C 1.37878 * 119.99862 * 300.00232 * 4 2 1 7 7 N 1.31513 * 119.99963 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99930 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47259 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47182 * 119.99856 * 8 6 4 11 11 H 1.48499 * 109.47285 * 240.00182 * 8 6 4 12 12 N 1.46499 * 109.47155 * 239.99978 * 2 1 3 13 13 C 1.46498 * 120.00128 * 299.99707 * 12 2 1 14 14 C 1.37713 * 119.99801 * 119.99692 * 12 2 1 15 15 N 1.30810 * 124.96439 * 359.97438 * 14 12 2 16 16 C 1.36202 * 108.68642 * 180.02562 * 15 14 12 17 17 C 1.40235 * 106.64302 * 359.97438 * 16 15 14 18 18 C 1.38574 * 119.84054 * 179.97438 * 17 16 15 19 19 C 1.38045 * 119.94002 * 0.02562 * 18 17 16 20 20 C 1.38614 * 120.47642 * 0.02562 * 19 18 17 21 21 C 1.37990 * 120.35874 * 359.71853 * 20 19 18 22 22 F 1.35104 * 120.15354 * 180.02562 * 21 20 19 23 23 O 1.34474 * 124.95488 * 179.97438 * 14 12 2 24 24 H 1.08993 * 109.46834 * 299.99783 * 1 2 3 25 25 H 1.08995 * 109.47252 * 60.00358 * 1 2 3 26 26 H 1.09006 * 109.46447 * 180.02562 * 1 2 3 27 27 H 0.97005 * 119.99616 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47077 * 270.00177 * 13 12 2 29 29 H 1.08997 * 109.46951 * 30.00114 * 13 12 2 30 30 H 1.08996 * 109.47248 * 149.99970 * 13 12 2 31 31 H 1.07997 * 120.02816 * 180.02562 * 18 17 16 32 32 H 1.07995 * 119.75806 * 180.02562 * 19 18 17 33 33 H 1.08000 * 119.81888 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6534 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3215 -1.1202 4.0079 9 1 3.1456 -2.2875 3.6038 10 1 3.1467 -0.1872 4.8165 11 1 1.1662 -1.5866 4.8161 12 7 2.0183 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.8100 -0.0213 -2.1027 15 7 3.1837 1.2275 -1.9930 16 6 3.9553 1.5481 -3.0687 17 6 4.0355 0.3954 -3.8633 18 6 4.7645 0.4195 -5.0415 19 6 5.4097 1.5768 -5.4290 20 6 5.3348 2.7189 -4.6471 21 6 4.6090 2.7143 -3.4736 22 9 4.5384 3.8300 -2.7149 23 8 3.3118 -0.5561 -3.2298 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 0.7089 1.1614 3.4844 28 1 2.4158 -2.7376 -0.9716 29 1 0.6905 -2.3002 -0.9846 30 1 1.6239 -2.2852 -2.5001 31 1 4.8280 -0.4663 -5.6560 32 1 5.9767 1.5924 -6.3480 33 1 5.8440 3.6184 -4.9602 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335794444.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:35 Heat of formation + Delta-G solvation = 8.165478 kcal Electronic energy + Delta-G solvation = -19616.490643 eV Core-core repulsion = 16365.877786 eV Total energy + Delta-G solvation = -3250.612857 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 264.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.49601 -42.69710 -37.81185 -36.72380 -34.05361 -33.00073 -30.16702 -29.61201 -28.89589 -26.04899 -25.31797 -23.31878 -22.28549 -21.59761 -19.82440 -18.01387 -17.59219 -16.71803 -16.45388 -16.21116 -15.59099 -15.19712 -15.09069 -14.84993 -14.01215 -13.58110 -13.52824 -12.94530 -12.77039 -11.89354 -11.83164 -11.75294 -11.69302 -11.55965 -11.33174 -11.10611 -10.88188 -10.78706 -10.39256 -10.24279 -9.82766 -9.42972 -8.90678 -8.53913 -8.38133 -6.99495 -6.16900 -4.26634 1.00922 1.31428 2.39453 3.01660 3.21718 3.30224 3.33376 3.63868 3.77962 4.30362 4.34517 4.72734 4.85537 5.14043 5.19779 5.32254 5.36539 5.61752 5.85867 5.90408 6.12919 6.14613 6.23008 6.29370 6.41446 6.60275 6.68848 6.83393 6.86577 7.14947 7.43678 7.62660 7.83438 8.00338 8.14501 8.41163 8.77840 9.39901 10.87722 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.005483 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.887387 B = 5105.229463 C = 5578.228346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.274 3.726 3 H 0.073 0.927 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.539 5.539 13 C 0.095 3.905 14 C 0.521 3.479 15 N -0.540 5.540 16 C 0.048 3.952 17 C 0.002 3.998 18 C -0.087 4.087 19 C -0.109 4.109 20 C -0.146 4.146 21 C 0.123 3.877 22 F -0.130 7.130 23 O -0.240 6.240 24 H 0.100 0.900 25 H 0.015 0.985 26 H 0.034 0.966 27 H 0.265 0.735 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.133 0.867 32 H 0.141 0.859 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.922 -1.696 -13.651 14.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.177 3.823 3 H 0.091 0.909 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.260 5.260 13 C -0.048 4.048 14 C 0.220 3.780 15 N -0.282 5.282 16 C -0.068 4.068 17 C -0.050 4.050 18 C -0.106 4.106 19 C -0.128 4.128 20 C -0.166 4.166 21 C 0.101 3.899 22 F -0.108 7.108 23 O -0.133 6.133 24 H 0.119 0.881 25 H 0.034 0.966 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.151 0.849 32 H 0.159 0.841 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.520 -1.293 -12.834 13.668 hybrid contribution 0.415 -0.838 0.552 1.086 sum 4.935 -2.131 -12.282 13.407 Atomic orbital electron populations 1.22172 0.97482 0.99809 1.01398 1.19291 0.91060 0.94387 0.77576 0.90880 1.21319 1.32417 1.13410 0.89899 0.91960 1.24868 0.94771 0.94930 0.98976 1.69877 1.36001 1.22364 1.24005 0.86368 0.78633 0.79558 0.82424 1.19777 1.20764 1.20803 1.46790 1.47497 1.11346 1.20386 1.21629 1.02069 0.80921 1.00153 1.22003 0.88906 0.85731 0.81315 1.71331 1.22891 1.10339 1.23659 1.19779 0.99496 0.94323 0.93161 1.19711 1.00477 0.87451 0.97382 1.19760 0.98001 0.99721 0.93087 1.20529 1.00947 0.91071 1.00267 1.20861 1.01429 1.00469 0.93879 1.16664 1.00738 0.80984 0.91523 1.91500 1.94752 1.49511 1.75074 1.84411 1.56875 1.39153 1.32876 0.88128 0.96558 0.94743 0.92474 0.92679 0.89665 0.92554 0.84939 0.84099 0.84153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.95 37.16 0.33 -3.13 16 2 C 0.27 6.82 2.70 -69.08 -0.19 6.63 16 3 H 0.07 2.08 7.10 -51.93 -0.37 1.71 16 4 C -0.53 -14.02 8.37 -34.44 -0.29 -14.31 16 5 H 0.06 1.63 7.65 -52.48 -0.40 1.23 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.38 11.32 55.43 0.63 -23.75 16 8 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 12 N -0.54 -11.67 2.83 -177.74 -0.50 -12.18 16 13 C 0.10 1.64 9.82 59.85 0.59 2.23 16 14 C 0.52 11.38 8.38 -87.62 -0.73 10.64 16 15 N -0.54 -12.65 10.30 -12.08 -0.12 -12.78 16 16 C 0.05 0.97 7.21 -84.63 -0.61 0.36 16 17 C 0.00 0.03 7.42 -38.71 -0.29 -0.25 16 18 C -0.09 -1.12 10.06 -39.53 -0.40 -1.52 16 19 C -0.11 -1.19 10.03 -39.51 -0.40 -1.58 16 20 C -0.15 -1.86 10.00 -39.53 -0.40 -2.26 16 21 C 0.12 2.14 7.34 -39.13 -0.29 1.85 16 22 F -0.13 -2.43 17.28 2.25 0.04 -2.39 16 23 O -0.24 -4.61 10.13 2.42 0.02 -4.58 16 24 H 0.10 2.55 6.07 -51.93 -0.32 2.23 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.03 0.72 6.66 -51.93 -0.35 0.38 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.40 6.43 -51.93 -0.33 1.06 16 30 H 0.06 0.83 7.66 -51.93 -0.40 0.43 16 31 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 288.63 15.07 4.35 4.35 Total: -1.00 -29.94 288.63 -6.78 -36.71 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -3.41 Total: -1.42 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -2.76 Total: 0.37 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.00 Total: -48.70 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: 0.02 Total: -4.58 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.94 -6.78 -36.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335794444.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.878 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds