Wall clock time and date at job start Mon Mar 30 2020 06:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46901 * 2 1 4 4 C 1.50700 * 109.47405 * 119.99870 * 2 1 3 5 5 H 1.08005 * 120.00111 * 120.00119 * 4 2 1 6 6 C 1.37878 * 119.99862 * 300.00232 * 4 2 1 7 7 N 1.31513 * 119.99963 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99930 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47259 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47182 * 119.99856 * 8 6 4 11 11 H 1.48499 * 109.47285 * 240.00182 * 8 6 4 12 12 N 1.46499 * 109.47155 * 239.99978 * 2 1 3 13 13 C 1.46498 * 120.00128 * 299.99707 * 12 2 1 14 14 C 1.37713 * 119.99801 * 119.99692 * 12 2 1 15 15 N 1.30810 * 124.96439 * 359.97438 * 14 12 2 16 16 C 1.36202 * 108.68642 * 180.02562 * 15 14 12 17 17 C 1.40235 * 106.64302 * 359.97438 * 16 15 14 18 18 C 1.38574 * 119.84054 * 179.97438 * 17 16 15 19 19 C 1.38045 * 119.94002 * 0.02562 * 18 17 16 20 20 C 1.38614 * 120.47642 * 0.02562 * 19 18 17 21 21 C 1.37990 * 120.35874 * 359.71853 * 20 19 18 22 22 F 1.35104 * 120.15354 * 180.02562 * 21 20 19 23 23 O 1.34474 * 124.95488 * 179.97438 * 14 12 2 24 24 H 1.08993 * 109.46834 * 299.99783 * 1 2 3 25 25 H 1.08995 * 109.47252 * 60.00358 * 1 2 3 26 26 H 1.09006 * 109.46447 * 180.02562 * 1 2 3 27 27 H 0.97005 * 119.99616 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47077 * 270.00177 * 13 12 2 29 29 H 1.08997 * 109.46951 * 30.00114 * 13 12 2 30 30 H 1.08996 * 109.47248 * 149.99970 * 13 12 2 31 31 H 1.07997 * 120.02816 * 180.02562 * 18 17 16 32 32 H 1.07995 * 119.75806 * 180.02562 * 19 18 17 33 33 H 1.08000 * 119.81888 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6534 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3215 -1.1202 4.0079 9 1 3.1456 -2.2875 3.6038 10 1 3.1467 -0.1872 4.8165 11 1 1.1662 -1.5866 4.8161 12 7 2.0183 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 6 2.8100 -0.0213 -2.1027 15 7 3.1837 1.2275 -1.9930 16 6 3.9553 1.5481 -3.0687 17 6 4.0355 0.3954 -3.8633 18 6 4.7645 0.4195 -5.0415 19 6 5.4097 1.5768 -5.4290 20 6 5.3348 2.7189 -4.6471 21 6 4.6090 2.7143 -3.4736 22 9 4.5384 3.8300 -2.7149 23 8 3.3118 -0.5561 -3.2298 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 0.7089 1.1614 3.4844 28 1 2.4158 -2.7376 -0.9716 29 1 0.6905 -2.3002 -0.9846 30 1 1.6239 -2.2852 -2.5001 31 1 4.8280 -0.4663 -5.6560 32 1 5.9767 1.5924 -6.3480 33 1 5.8440 3.6184 -4.9602 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335794444.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:35 Heat of formation + Delta-G solvation = -11.412453 kcal Electronic energy + Delta-G solvation = -19617.339606 eV Core-core repulsion = 16365.877786 eV Total energy + Delta-G solvation = -3251.461820 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 264.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.85249 -44.10652 -39.14455 -38.24299 -35.53987 -34.89041 -31.67358 -31.05580 -30.26879 -27.52140 -27.28838 -24.71472 -23.69776 -22.95009 -21.53093 -19.32732 -19.00505 -18.46665 -17.94828 -17.85106 -16.97125 -16.62460 -16.47651 -16.35068 -15.58183 -15.12113 -14.88030 -14.52484 -14.16178 -13.58416 -13.20213 -13.09126 -13.05365 -12.98708 -12.84763 -12.76994 -12.61809 -12.55677 -12.22474 -12.12530 -11.43055 -11.15357 -10.58015 -10.41318 -9.60405 -8.54281 -8.16278 -6.36276 -0.22252 0.13196 0.90301 1.39956 1.42421 1.53215 1.58489 2.26587 2.39980 2.55722 3.09429 3.10646 3.40743 3.79597 4.06756 4.10665 4.28394 4.40815 4.53114 4.65566 4.67781 4.83844 4.89502 4.94429 4.97472 5.12672 5.17453 5.26964 5.37207 5.52271 5.66942 5.79576 5.96980 6.09404 6.35366 6.67924 6.95279 7.34394 8.85240 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.005483 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.887387 B = 5105.229463 C = 5578.228346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.284 3.716 3 H 0.025 0.975 4 C -0.543 4.543 5 H 0.060 0.940 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.967 3.033 9 H -0.267 1.267 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.552 5.552 13 C 0.096 3.904 14 C 0.505 3.495 15 N -0.590 5.590 16 C -0.004 4.004 17 C -0.015 4.015 18 C -0.078 4.078 19 C -0.077 4.077 20 C -0.124 4.124 21 C 0.087 3.913 22 F -0.150 7.150 23 O -0.236 6.236 24 H 0.076 0.924 25 H 0.022 0.978 26 H 0.053 0.947 27 H 0.267 0.733 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.172 0.828 32 H 0.202 0.798 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.688 -2.862 -16.374 17.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.184 3.816 3 H 0.043 0.957 4 C -0.581 4.581 5 H 0.078 0.922 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.792 3.208 9 H -0.192 1.192 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.275 5.275 13 C -0.046 4.046 14 C 0.204 3.796 15 N -0.334 5.334 16 C -0.118 4.118 17 C -0.066 4.066 18 C -0.096 4.096 19 C -0.095 4.095 20 C -0.144 4.144 21 C 0.065 3.935 22 F -0.128 7.128 23 O -0.129 6.129 24 H 0.094 0.906 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.190 0.810 32 H 0.219 0.781 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 6.311 -2.464 -15.613 17.020 hybrid contribution 0.031 -0.359 1.158 1.213 sum 6.342 -2.823 -14.455 16.036 Atomic orbital electron populations 1.21958 0.96373 1.00657 1.00435 1.18828 0.91781 0.92209 0.78776 0.95721 1.21552 1.32393 1.13336 0.90851 0.92202 1.25676 0.94914 0.95571 1.01820 1.70010 1.36961 1.23598 1.24653 0.85373 0.78276 0.78381 0.78764 1.19159 1.21140 1.19652 1.46558 1.48382 1.12651 1.19924 1.21807 1.02285 0.78587 1.01923 1.21887 0.89615 0.85738 0.82318 1.71183 1.24341 1.11777 1.26118 1.20208 1.01332 0.96609 0.93618 1.20413 1.01319 0.86222 0.98622 1.20455 0.95925 1.02049 0.91186 1.21316 0.98440 0.88882 1.00891 1.21440 0.98859 1.02717 0.91372 1.17315 1.02722 0.80073 0.93386 1.91440 1.95124 1.50264 1.76009 1.84361 1.57117 1.39350 1.32054 0.90556 0.95922 0.92849 0.92385 0.92449 0.89070 0.90056 0.81013 0.78149 0.80351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.48 8.95 71.98 0.64 -5.84 16 2 C 0.28 14.81 2.70 44.25 0.12 14.93 16 3 H 0.02 1.52 7.10 -2.38 -0.02 1.50 16 4 C -0.54 -29.52 8.37 25.60 0.21 -29.31 16 5 H 0.06 3.20 7.65 -2.91 -0.02 3.18 16 6 C 0.02 1.11 5.30 84.66 0.45 1.56 16 7 N -0.91 -52.13 11.32 21.45 0.24 -51.89 16 8 Si 0.97 43.04 29.54 68.60 2.03 45.07 16 9 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 10 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 12 N -0.55 -24.82 2.83 -826.83 -2.34 -27.16 16 13 C 0.10 3.28 9.82 127.77 1.25 4.54 16 14 C 0.51 23.06 8.38 179.30 1.50 24.56 16 15 N -0.59 -29.48 10.30 -306.39 -3.16 -32.64 16 16 C 0.00 -0.17 7.21 39.30 0.28 0.11 16 17 C -0.01 -0.51 7.42 22.84 0.17 -0.34 16 18 C -0.08 -1.67 10.06 22.30 0.22 -1.44 16 19 C -0.08 -1.22 10.03 22.31 0.22 -0.99 16 20 C -0.12 -2.69 10.00 22.30 0.22 -2.46 16 21 C 0.09 3.01 7.34 22.56 0.17 3.18 16 22 F -0.15 -5.84 17.28 44.97 0.78 -5.06 16 23 O -0.24 -9.12 10.13 -14.27 -0.14 -9.26 16 24 H 0.08 4.03 6.07 -2.39 -0.01 4.02 16 25 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 2.28 6.66 -2.38 -0.02 2.26 16 27 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.09 2.95 6.43 -2.39 -0.02 2.94 16 30 H 0.08 2.33 7.66 -2.39 -0.02 2.31 16 31 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.20 0.99 8.06 -2.91 -0.02 0.97 16 33 H 0.18 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -71.72 288.63 4.01 -67.71 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: 1.14 Total: 4.74 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 5.47 Total: 8.50 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -5.26 Total: -111.69 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.14 Total: -9.26 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.78 Total: -5.06 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -71.72 4.01 -67.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335794444.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.293 kcal (2) G-P(sol) polarization free energy of solvation -71.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds