Wall clock time and date at job start Mon Mar 30 2020 06:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38236 * 119.99576 * 2 1 4 4 C 1.38240 * 120.00058 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.00050 * 180.02562 * 4 3 2 6 6 C 1.38232 * 119.99631 * 359.97438 * 4 3 2 7 7 C 1.50703 * 119.99860 * 180.02562 * 6 4 3 8 8 S 1.81401 * 109.47002 * 89.99951 * 7 6 4 9 9 C 1.81397 * 102.99785 * 179.97438 * 8 7 6 10 10 C 1.53007 * 109.47166 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47300 * 180.02562 * 10 9 8 12 12 H 1.08006 * 120.00143 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00120 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00197 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00002 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46948 * 90.00025 * 15 13 11 17 17 H 1.48500 * 109.47236 * 210.00029 * 15 13 11 18 18 H 1.48501 * 109.47099 * 330.00531 * 15 13 11 19 19 C 1.38234 * 120.00312 * 0.27932 * 6 4 3 20 20 C 1.50700 * 120.00283 * 179.72884 * 19 6 4 21 21 C 1.38235 * 119.99933 * 359.51395 * 19 6 4 22 22 H 1.09000 * 109.47210 * 90.00416 * 1 2 3 23 23 H 1.09001 * 109.47028 * 209.99562 * 1 2 3 24 24 H 1.08995 * 109.47328 * 329.99473 * 1 2 3 25 25 H 1.08002 * 120.00221 * 359.97438 * 3 2 1 26 26 H 1.09003 * 109.46863 * 269.97527 * 5 4 3 27 27 H 1.08994 * 109.47071 * 29.97441 * 5 4 3 28 28 H 1.09000 * 109.46782 * 149.97607 * 5 4 3 29 29 H 1.09002 * 109.47152 * 330.00052 * 7 6 4 30 30 H 1.09001 * 109.46980 * 210.00152 * 7 6 4 31 31 H 1.09004 * 109.47371 * 299.99984 * 9 8 7 32 32 H 1.09000 * 109.47527 * 60.00229 * 9 8 7 33 33 H 1.08991 * 109.47137 * 300.00517 * 10 9 8 34 34 H 1.09000 * 109.46480 * 60.00238 * 10 9 8 35 35 H 0.97001 * 120.00629 * 179.97438 * 14 13 11 36 36 H 1.08991 * 109.47506 * 89.99737 * 20 19 6 37 37 H 1.09006 * 109.47000 * 210.00072 * 20 19 6 38 38 H 1.09005 * 109.46653 * 329.99996 * 20 19 6 39 39 H 1.08002 * 120.00360 * 180.27290 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.3339 2.5025 0.0011 6 6 4.2717 0.0002 0.0016 7 6 5.7787 0.0003 0.0028 8 16 6.3820 0.0011 1.7135 9 6 8.1846 0.0003 1.5104 10 6 8.8529 0.0015 2.8868 11 6 10.3504 0.0015 2.7182 12 1 10.7823 0.0011 1.7283 13 6 11.1691 0.0019 3.8275 14 7 12.4760 0.0024 3.6803 15 14 10.4221 0.0034 5.5396 16 1 10.2237 -1.3964 5.9943 17 1 11.3356 0.7037 6.4778 18 1 9.1129 0.7037 5.5080 19 6 3.5806 -1.1970 -0.0037 20 6 4.3341 -2.5020 -0.0087 21 6 2.1983 -1.1971 0.0001 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 1.6580 2.1325 -0.0004 26 1 4.5163 2.8171 -1.0264 27 1 3.7444 3.2620 0.5145 28 1 5.2859 2.3721 0.5157 29 1 6.1424 0.8901 -0.5112 30 1 6.1424 -0.8899 -0.5104 31 1 8.4878 -0.8902 0.9597 32 1 8.4885 0.8898 0.9587 33 1 8.5496 0.8920 3.4372 34 1 8.5490 -0.8879 3.4389 35 1 13.0520 0.0031 4.4608 36 1 4.5154 -2.8209 1.0176 37 1 3.7453 -3.2596 -0.5260 38 1 5.2868 -2.3695 -0.5215 39 1 1.6583 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359029536.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:21 Heat of formation + Delta-G solvation = -24.025121 kcal Electronic energy + Delta-G solvation = -16988.032771 eV Core-core repulsion = 14405.777544 eV Total energy + Delta-G solvation = -2582.255227 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 264.124 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.78824 -35.76933 -35.35920 -34.50484 -33.29104 -30.46522 -28.79457 -27.61480 -27.61007 -25.70371 -22.76452 -21.69726 -20.90698 -19.14834 -17.30340 -17.21150 -16.59213 -16.42796 -15.71165 -15.45592 -15.16899 -14.82257 -14.46570 -14.23824 -14.03109 -13.90047 -13.81299 -13.75872 -13.61849 -13.46705 -13.13162 -12.90796 -12.48199 -12.22219 -12.16744 -11.99022 -11.83925 -11.76583 -11.65883 -11.52928 -10.84184 -10.81583 -9.44541 -9.27611 -8.63208 -8.34692 -6.40122 0.07056 0.46905 1.06411 1.34086 1.35557 1.48121 1.74124 2.32402 2.82742 3.00416 3.67405 3.78067 3.96306 4.00194 4.05247 4.20380 4.26659 4.38069 4.46374 4.56370 4.61054 4.70291 4.75473 4.78271 4.79272 4.82757 4.88192 4.99056 5.04290 5.13413 5.17494 5.29587 5.36760 5.39080 5.52355 5.59652 5.67456 5.75148 6.13943 6.18080 6.65492 7.24549 8.81423 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.033561 B = 0.003799 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.100948 B = 7369.180452 C = 7486.100466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.081 4.081 3 C -0.140 4.140 4 C -0.069 4.069 5 C -0.122 4.122 6 C -0.099 4.099 7 C -0.037 4.037 8 S -0.290 6.290 9 C -0.052 4.052 10 C 0.010 3.990 11 C -0.531 4.531 12 H 0.040 0.960 13 C 0.013 3.987 14 N -0.945 5.945 15 Si 0.946 3.054 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.253 1.253 19 C -0.070 4.070 20 C -0.117 4.117 21 C -0.139 4.139 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.139 0.861 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.022 0.978 34 H 0.021 0.979 35 H 0.269 0.731 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.411 -0.039 -9.228 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.082 4.082 3 C -0.158 4.158 4 C -0.071 4.071 5 C -0.179 4.179 6 C -0.100 4.100 7 C -0.184 4.184 8 S -0.060 6.060 9 C -0.200 4.200 10 C -0.029 4.029 11 C -0.571 4.571 12 H 0.058 0.942 13 C -0.185 4.185 14 N -0.585 5.585 15 Si 0.769 3.231 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.177 1.177 19 C -0.072 4.072 20 C -0.174 4.174 21 C -0.157 4.157 22 H 0.100 0.900 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.157 0.843 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -25.784 -0.037 -8.195 27.055 hybrid contribution 1.331 -0.006 -0.377 1.384 sum -24.452 -0.043 -8.572 25.912 Atomic orbital electron populations 1.20828 0.89097 1.03611 1.03202 1.20274 0.97579 0.92732 0.97582 1.21113 0.92921 0.98691 1.03033 1.19968 0.94405 0.94914 0.97837 1.20918 1.00293 0.93694 1.02955 1.19038 0.92466 0.93600 1.04928 1.22305 0.95364 1.06074 0.94666 1.86992 1.06883 1.98021 1.14084 1.23191 0.90926 1.03950 1.01918 1.19184 0.93730 0.97100 0.92874 1.21282 0.90692 1.51286 0.93819 0.94204 1.25891 0.95003 0.93837 1.03797 1.70032 1.04523 1.51985 1.31942 0.85721 0.79195 0.79385 0.78813 1.18983 1.20393 1.17654 1.19965 0.94418 0.94917 0.97870 1.20881 0.99976 0.93738 1.02771 1.21108 0.92908 0.98695 1.03018 0.90021 0.90723 0.90737 0.84332 0.89999 0.90294 0.91950 0.88895 0.88603 0.90843 0.90883 0.95943 0.96052 0.92195 0.91190 0.89778 0.91625 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.24 0.71 -0.63 16 2 C -0.08 -1.53 5.88 -19.87 -0.12 -1.64 16 3 C -0.14 -2.85 9.36 22.27 0.21 -2.64 16 4 C -0.07 -1.64 5.88 -19.87 -0.12 -1.76 16 5 C -0.12 -2.57 9.19 71.23 0.65 -1.92 16 6 C -0.10 -2.55 5.14 -19.87 -0.10 -2.65 16 7 C -0.04 -1.02 4.93 71.24 0.35 -0.67 16 8 S -0.29 -10.13 21.36 -56.49 -1.21 -11.34 16 9 C -0.05 -2.10 5.88 71.98 0.42 -1.68 16 10 C 0.01 0.47 4.05 29.85 0.12 0.60 16 11 C -0.53 -30.91 9.66 25.60 0.25 -30.66 16 12 H 0.04 2.51 7.99 -2.91 -0.02 2.48 16 13 C 0.01 0.75 5.47 84.65 0.46 1.21 16 14 N -0.94 -59.20 13.96 21.45 0.30 -58.90 16 15 Si 0.95 45.07 27.47 68.60 1.88 46.95 16 16 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.25 -11.53 6.54 99.48 0.65 -10.88 16 19 C -0.07 -1.64 5.88 -19.87 -0.12 -1.76 16 20 C -0.12 -2.45 9.60 71.24 0.68 -1.76 16 21 C -0.14 -2.83 9.36 22.27 0.21 -2.62 16 22 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.07 0.78 8.09 -2.39 -0.02 0.77 16 24 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 25 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 28 H 0.06 1.54 6.37 -2.39 -0.02 1.53 16 29 H 0.09 2.39 6.70 -2.39 -0.02 2.37 16 30 H 0.10 2.45 5.94 -2.39 -0.01 2.44 16 31 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 34 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 35 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 1.36 8.09 -2.38 -0.02 1.34 16 38 H 0.06 1.39 5.94 -2.38 -0.01 1.38 16 39 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -66.48 329.02 5.55 -60.92 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.95 Total: 10.94 kcal Atomic # 6 Polarization: -52.20 SS G_CDS: 3.62 Total: -48.58 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 0.30 Total: -58.90 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.95 kcal Atomic # 16 Polarization: -10.13 SS G_CDS: -1.21 Total: -11.34 kcal Total: -66.48 5.55 -60.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359029536.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.898 kcal (2) G-P(sol) polarization free energy of solvation -66.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds