Wall clock time and date at job start Mon Mar 30 2020 06:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.50701 * 109.46992 * 269.99655 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 C 1.37710 * 119.99805 * 269.99467 * 3 2 1 14 14 N 1.30822 * 124.95974 * 0.02562 * 13 3 2 15 15 C 1.36209 * 108.68349 * 179.97438 * 14 13 3 16 16 C 1.40231 * 106.64293 * 359.97438 * 15 14 13 17 17 C 1.38570 * 119.84588 * 180.02562 * 16 15 14 18 18 C 1.38041 * 119.93877 * 0.02562 * 17 16 15 19 19 C 1.38607 * 120.47534 * 0.02562 * 18 17 16 20 20 C 1.37998 * 120.36019 * 359.95420 * 19 18 17 21 21 F 1.35098 * 120.15310 * 180.02562 * 20 19 18 22 22 O 1.34477 * 124.96027 * 179.69836 * 13 3 2 23 23 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 24 24 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 26 26 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 27 27 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 28 28 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 29 29 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 30 30 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 31 31 H 1.08001 * 120.03138 * 180.02562 * 17 16 15 32 32 H 1.08002 * 119.75997 * 180.02562 * 18 17 16 33 33 H 1.07999 * 119.82166 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 1.0066 2.7824 1.7036 6 1 0.1156 2.7248 1.0961 7 6 0.9948 3.5050 2.8778 8 7 2.0797 3.5748 3.6179 9 14 -0.5620 4.3850 3.4173 10 1 -1.6543 3.3947 3.5947 11 1 -0.3145 5.0853 4.7033 12 1 -0.9549 5.3752 2.3827 13 6 2.2479 2.0304 -1.1926 14 7 2.0630 1.5084 -2.3779 15 6 2.3907 2.4366 -3.3194 16 6 2.7966 3.5859 -2.6260 17 6 3.1935 4.7117 -3.3298 18 6 3.1879 4.6988 -4.7101 19 6 2.7867 3.5660 -5.4009 20 6 2.3887 2.4360 -4.7162 21 9 1.9990 1.3340 -5.3937 22 8 2.6889 3.2954 -1.3090 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.0644 2.7986 1.1383 29 1 2.5506 1.3453 2.0283 30 1 2.0715 4.0835 4.4438 31 1 3.5071 5.5984 -2.7989 32 1 3.4982 5.5776 -5.2558 33 1 2.7868 3.5674 -6.4809 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362647602.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:47 Heat of formation + Delta-G solvation = -0.790519 kcal Electronic energy + Delta-G solvation = -19613.023801 eV Core-core repulsion = 16362.022583 eV Total energy + Delta-G solvation = -3251.001218 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 264.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.56139 -42.62816 -37.77892 -36.65978 -34.03855 -32.82614 -30.65290 -29.88075 -29.04299 -26.90133 -23.64537 -23.32569 -22.53535 -21.59237 -20.32377 -17.92559 -17.49658 -16.87863 -16.42948 -16.23139 -15.58022 -15.13538 -15.10817 -14.89410 -14.16385 -13.75097 -13.28704 -12.99630 -12.86636 -12.27771 -11.88300 -11.79565 -11.66246 -11.61718 -11.40497 -11.16277 -11.07732 -10.82108 -10.59133 -10.20015 -9.95824 -9.79937 -9.02696 -8.63552 -8.35548 -7.07649 -6.23161 -4.32236 1.03604 1.36223 2.46287 3.03651 3.21095 3.25869 3.29119 3.68182 3.78505 4.27370 4.34789 4.69963 4.89377 5.08938 5.26102 5.36156 5.39427 5.56112 5.74907 5.82194 5.89548 6.10408 6.20234 6.26286 6.31980 6.42745 6.47464 6.70953 6.79971 6.91197 7.03793 7.37068 7.69988 7.89672 7.93453 8.36268 8.73804 9.34704 10.82507 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.005896 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.912248 B = 4747.526479 C = 5413.606902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.139 3.861 3 N -0.544 5.544 4 C 0.246 3.754 5 C -0.540 4.540 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.891 5.891 9 Si 0.900 3.100 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.275 1.275 13 C 0.534 3.466 14 N -0.566 5.566 15 C 0.045 3.955 16 C 0.008 3.992 17 C -0.084 4.084 18 C -0.108 4.108 19 C -0.147 4.147 20 C 0.117 3.883 21 F -0.134 7.134 22 O -0.216 6.216 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.267 0.733 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.833 -0.799 -11.947 12.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.017 3.983 3 N -0.265 5.265 4 C 0.128 3.872 5 C -0.579 4.579 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.727 3.273 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.201 1.201 13 C 0.234 3.766 14 N -0.310 5.310 15 C -0.070 4.070 16 C -0.044 4.044 17 C -0.103 4.103 18 C -0.127 4.127 19 C -0.167 4.167 20 C 0.095 3.905 21 F -0.113 7.113 22 O -0.107 6.107 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.153 0.847 32 H 0.159 0.841 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.671 -1.434 -11.639 11.845 hybrid contribution -0.723 1.083 0.598 1.433 sum 0.948 -0.351 -11.041 11.087 Atomic orbital electron populations 1.22197 0.95901 1.01269 1.03356 1.21417 0.94777 0.79583 1.02514 1.46570 1.65879 1.12999 1.01013 1.19602 0.97592 0.92765 0.77283 1.21438 0.97533 1.31859 1.07040 0.91879 1.24932 0.96705 0.95987 0.96096 1.69906 1.27582 1.41084 1.14338 0.86523 0.82960 0.79879 0.77946 1.19976 1.20991 1.20094 1.21729 0.87871 0.78196 0.88825 1.71170 1.34862 1.29591 0.95393 1.19648 1.02055 0.91643 0.93662 1.19818 1.06249 0.97497 0.80860 1.19854 1.01917 0.95464 0.93083 1.20544 1.01878 0.98159 0.92136 1.20838 1.03275 0.92031 1.00545 1.16595 1.03645 0.84573 0.85641 1.91466 1.88681 1.51638 1.79498 1.84603 1.71398 1.29983 1.24702 0.92753 0.92372 0.90845 0.90479 0.89927 0.94281 0.93362 0.92323 0.84652 0.84072 0.84257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 10.24 37.16 0.38 -2.47 16 2 C 0.14 2.43 6.28 -4.04 -0.03 2.40 16 3 N -0.54 -11.56 2.54 -177.53 -0.45 -12.01 16 4 C 0.25 5.95 5.35 -5.19 -0.03 5.92 16 5 C -0.54 -14.21 8.92 -34.44 -0.31 -14.52 16 6 H 0.06 1.68 7.42 -52.49 -0.39 1.29 16 7 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -24.74 13.29 55.43 0.74 -24.00 16 9 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.53 11.68 8.37 -87.62 -0.73 10.95 16 14 N -0.57 -12.01 10.58 -12.08 -0.13 -12.14 16 15 C 0.05 0.88 7.21 -84.64 -0.61 0.27 16 16 C 0.01 0.15 7.42 -38.71 -0.29 -0.13 16 17 C -0.08 -1.22 10.06 -39.53 -0.40 -1.61 16 18 C -0.11 -1.25 10.03 -39.52 -0.40 -1.65 16 19 C -0.15 -1.86 10.00 -39.53 -0.40 -2.26 16 20 C 0.12 1.95 7.34 -39.13 -0.29 1.66 16 21 F -0.13 -2.29 17.27 2.25 0.04 -2.25 16 22 O -0.22 -4.75 10.14 2.40 0.02 -4.73 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 1.37 7.26 -51.93 -0.38 1.00 16 26 H 0.08 1.29 7.60 -51.93 -0.39 0.89 16 27 H 0.08 1.30 7.89 -51.93 -0.41 0.89 16 28 H 0.04 1.02 7.67 -51.93 -0.40 0.62 16 29 H 0.05 1.17 7.89 -51.93 -0.41 0.76 16 30 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 295.85 15.07 4.46 4.46 Total: -1.00 -29.50 295.85 -7.15 -36.66 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -3.63 Total: -1.96 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -3.18 Total: 0.23 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.16 Total: -48.15 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: 0.02 Total: -4.73 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.50 -7.15 -36.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362647602.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.868 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds