Wall clock time and date at job start Mon Mar 30 2020 06:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.50701 * 109.46992 * 269.99655 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 C 1.37710 * 119.99805 * 269.99467 * 3 2 1 14 14 N 1.30822 * 124.95974 * 0.02562 * 13 3 2 15 15 C 1.36209 * 108.68349 * 179.97438 * 14 13 3 16 16 C 1.40231 * 106.64293 * 359.97438 * 15 14 13 17 17 C 1.38570 * 119.84588 * 180.02562 * 16 15 14 18 18 C 1.38041 * 119.93877 * 0.02562 * 17 16 15 19 19 C 1.38607 * 120.47534 * 0.02562 * 18 17 16 20 20 C 1.37998 * 120.36019 * 359.95420 * 19 18 17 21 21 F 1.35098 * 120.15310 * 180.02562 * 20 19 18 22 22 O 1.34477 * 124.96027 * 179.69836 * 13 3 2 23 23 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 24 24 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 26 26 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 27 27 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 28 28 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 29 29 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 30 30 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 31 31 H 1.08001 * 120.03138 * 180.02562 * 17 16 15 32 32 H 1.08002 * 119.75997 * 180.02562 * 18 17 16 33 33 H 1.07999 * 119.82166 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 1.0066 2.7824 1.7036 6 1 0.1156 2.7248 1.0961 7 6 0.9948 3.5050 2.8778 8 7 2.0797 3.5748 3.6179 9 14 -0.5620 4.3850 3.4173 10 1 -1.6543 3.3947 3.5947 11 1 -0.3145 5.0853 4.7033 12 1 -0.9549 5.3752 2.3827 13 6 2.2479 2.0304 -1.1926 14 7 2.0630 1.5084 -2.3779 15 6 2.3907 2.4366 -3.3194 16 6 2.7966 3.5859 -2.6260 17 6 3.1935 4.7117 -3.3298 18 6 3.1879 4.6988 -4.7101 19 6 2.7867 3.5660 -5.4009 20 6 2.3887 2.4360 -4.7162 21 9 1.9990 1.3340 -5.3937 22 8 2.6889 3.2954 -1.3090 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.0644 2.7986 1.1383 29 1 2.5506 1.3453 2.0283 30 1 2.0715 4.0835 4.4438 31 1 3.5071 5.5984 -2.7989 32 1 3.4982 5.5776 -5.2558 33 1 2.7868 3.5674 -6.4809 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362647602.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:47 Heat of formation + Delta-G solvation = -19.120957 kcal Electronic energy + Delta-G solvation = -19613.818669 eV Core-core repulsion = 16362.022583 eV Total energy + Delta-G solvation = -3251.796086 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 264.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.84501 -44.08781 -39.11443 -38.14485 -35.58767 -34.75068 -32.10505 -31.11258 -30.55948 -28.63656 -25.17284 -24.98722 -23.91821 -22.93524 -21.83704 -19.30010 -18.94515 -18.77508 -17.88647 -17.74988 -16.94214 -16.69500 -16.43574 -16.34732 -15.76004 -15.03247 -14.93205 -14.47835 -14.12663 -14.01609 -13.52494 -13.11337 -13.06694 -13.03405 -12.82586 -12.78266 -12.62223 -12.56592 -12.24851 -11.84451 -11.77449 -11.38686 -10.68936 -10.50907 -9.60734 -8.63490 -8.21522 -6.43117 -0.22418 0.13681 1.00963 1.37290 1.38357 1.46670 1.56722 2.19761 2.36800 2.54344 3.01953 3.08170 3.36472 3.79884 4.00870 4.14203 4.20893 4.35165 4.36879 4.49439 4.57055 4.83279 4.87667 4.95116 4.99662 5.02415 5.16723 5.19844 5.29640 5.38596 5.54289 5.65657 5.88093 5.93632 6.27208 6.61455 6.87410 7.27696 8.78162 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.005896 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.912248 B = 4747.526479 C = 5413.606902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.135 3.865 3 N -0.553 5.553 4 C 0.264 3.736 5 C -0.548 4.548 6 H 0.053 0.947 7 C 0.020 3.980 8 N -0.921 5.921 9 Si 0.960 3.040 10 H -0.266 1.266 11 H -0.276 1.276 12 H -0.277 1.277 13 C 0.512 3.488 14 N -0.575 5.575 15 C 0.003 3.997 16 C -0.021 4.021 17 C -0.089 4.089 18 C -0.075 4.075 19 C -0.124 4.124 20 C 0.098 3.902 21 F -0.142 7.142 22 O -0.244 6.244 23 H 0.034 0.966 24 H 0.093 0.907 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.010 0.990 29 H 0.044 0.956 30 H 0.270 0.730 31 H 0.157 0.843 32 H 0.198 0.802 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.625 0.498 -14.138 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.015 3.985 3 N -0.276 5.276 4 C 0.144 3.856 5 C -0.587 4.587 6 H 0.071 0.929 7 C -0.180 4.180 8 N -0.559 5.559 9 Si 0.785 3.215 10 H -0.190 1.190 11 H -0.201 1.201 12 H -0.203 1.203 13 C 0.211 3.789 14 N -0.320 5.320 15 C -0.110 4.110 16 C -0.072 4.072 17 C -0.108 4.108 18 C -0.094 4.094 19 C -0.144 4.144 20 C 0.076 3.924 21 F -0.121 7.121 22 O -0.137 6.137 23 H 0.053 0.947 24 H 0.112 0.888 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.118 0.882 28 H 0.028 0.972 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.175 0.825 32 H 0.215 0.785 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.466 -0.141 -13.883 13.960 hybrid contribution -0.582 0.763 1.033 1.410 sum 0.883 0.622 -12.849 12.895 Atomic orbital electron populations 1.22095 0.95403 1.02894 1.01215 1.21638 0.95151 0.78083 1.03630 1.46463 1.67109 1.13934 1.00061 1.19137 0.95907 0.92028 0.78533 1.21627 0.97829 1.32184 1.07056 0.92856 1.25698 0.99571 0.96617 0.96133 1.70001 1.29303 1.41876 1.14760 0.85574 0.79588 0.78784 0.77561 1.19030 1.20113 1.20298 1.21908 0.89254 0.78548 0.89147 1.71053 1.34751 1.30565 0.95641 1.20054 1.04293 0.91863 0.94825 1.20499 1.07943 0.99035 0.79758 1.20438 1.01202 0.94753 0.94436 1.21261 0.98047 0.99261 0.90803 1.21434 0.99993 0.90292 1.02633 1.17065 1.04765 0.85777 0.84773 1.91443 1.88946 1.52351 1.79312 1.84537 1.71932 1.30307 1.26888 0.94652 0.88802 0.92972 0.89770 0.88243 0.97180 0.93834 0.92093 0.82540 0.78487 0.79898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.41 10.24 71.98 0.74 -4.67 16 2 C 0.14 4.86 6.28 86.38 0.54 5.40 16 3 N -0.55 -24.74 2.54 -826.16 -2.09 -26.83 16 4 C 0.26 13.43 5.35 85.63 0.46 13.89 16 5 C -0.55 -29.85 8.92 25.60 0.23 -29.62 16 6 H 0.05 2.95 7.42 -2.91 -0.02 2.93 16 7 C 0.02 1.10 5.46 84.66 0.46 1.56 16 8 N -0.92 -52.14 13.29 21.45 0.28 -51.85 16 9 Si 0.96 42.93 29.54 68.60 2.03 44.96 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 C 0.51 23.60 8.37 179.30 1.50 25.10 16 14 N -0.58 -25.42 10.58 -306.38 -3.24 -28.66 16 15 C 0.00 0.13 7.21 39.30 0.28 0.41 16 16 C -0.02 -0.82 7.42 22.83 0.17 -0.65 16 17 C -0.09 -2.37 10.06 22.30 0.22 -2.14 16 18 C -0.08 -1.36 10.03 22.31 0.22 -1.14 16 19 C -0.12 -2.59 10.00 22.30 0.22 -2.37 16 20 C 0.10 3.11 7.34 22.56 0.17 3.28 16 21 F -0.14 -4.70 17.27 44.97 0.78 -3.93 16 22 O -0.24 -11.36 10.14 -14.34 -0.15 -11.51 16 23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 25 H 0.05 1.99 7.26 -2.39 -0.02 1.98 16 26 H 0.08 2.88 7.60 -2.39 -0.02 2.86 16 27 H 0.10 3.17 7.89 -2.39 -0.02 3.15 16 28 H 0.01 0.57 7.67 -2.39 -0.02 0.55 16 29 H 0.04 2.22 7.89 -2.39 -0.02 2.20 16 30 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 32 H 0.20 1.51 8.06 -2.91 -0.02 1.48 16 33 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -68.11 295.85 3.95 -64.16 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: 1.13 Total: 4.62 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 5.22 Total: 9.05 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -5.05 Total: -107.35 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.15 Total: -11.51 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.78 Total: -3.93 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -68.11 3.95 -64.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362647602.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.040 kcal (2) G-P(sol) polarization free energy of solvation -68.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds