Wall clock time and date at job start Mon Mar 30 2020 06:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47576 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47046 * 119.99929 * 9 7 5 12 12 H 1.48498 * 109.47240 * 239.99731 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.30370 * 120.00109 * 119.99565 * 13 3 2 15 15 N 1.37221 * 125.54417 * 179.71570 * 14 13 3 16 16 H 0.97003 * 126.43344 * 359.97438 * 15 14 13 17 17 C 1.39732 * 107.12814 * 179.84702 * 15 14 13 18 18 C 1.39358 * 106.84984 * 0.41185 * 17 15 14 19 19 C 1.38680 * 119.67794 * 179.72753 * 18 17 15 20 20 C 1.38157 * 120.00225 * 359.96871 * 19 18 17 21 21 C 1.38338 * 120.33267 * 0.03066 * 20 19 18 22 22 C 1.38383 * 120.11314 * 359.97438 * 21 20 19 23 23 F 1.35101 * 120.09755 * 179.97438 * 22 21 20 24 24 O 1.34716 * 125.53872 * 0.02726 * 14 13 3 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 31 31 H 1.08001 * 119.99634 * 179.97438 * 19 18 17 32 32 H 1.08006 * 119.83480 * 180.02562 * 20 19 18 33 33 H 1.07993 * 119.94744 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5988 1.5443 0.1931 11 1 6.4000 1.6156 2.6091 12 1 6.4962 -0.5190 1.4625 13 7 1.6524 2.0975 -1.2518 14 6 0.8968 3.1596 -1.2250 15 7 0.4715 3.8639 -2.3231 16 1 0.6763 3.6646 -3.2501 17 6 -0.3144 4.9204 -1.8554 18 6 -0.3324 4.8257 -0.4652 19 6 -1.0399 5.7591 0.2775 20 6 -1.7219 6.7767 -0.3612 21 6 -1.7042 6.8709 -1.7413 22 6 -1.0013 5.9446 -2.4914 23 9 -0.9846 6.0366 -3.8392 24 8 0.4115 3.7475 -0.1142 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8293 -0.0605 2.9501 31 1 -1.0577 5.6904 1.3552 32 1 -2.2718 7.5024 0.2199 33 1 -2.2399 7.6687 -2.2341 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362662400.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:34 Heat of formation + Delta-G solvation = -5.383496 kcal Electronic energy + Delta-G solvation = -19471.506616 eV Core-core repulsion = 16220.306231 eV Total energy + Delta-G solvation = -3251.200385 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 264.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.97821 -42.40469 -37.87364 -35.60486 -34.98471 -32.40340 -31.07828 -30.16069 -28.85724 -26.69883 -23.32514 -23.19012 -22.88446 -21.63466 -19.70045 -18.61668 -17.71271 -16.56220 -16.33566 -16.18509 -15.85370 -15.39914 -15.27242 -14.85179 -14.27471 -13.81787 -13.27110 -13.04735 -12.57709 -12.26615 -12.14376 -12.03357 -11.87184 -11.78686 -11.23182 -10.92338 -10.84272 -10.29761 -10.01453 -9.78762 -9.70511 -9.10345 -8.71079 -8.60319 -8.20094 -7.15306 -6.02677 -4.08804 0.92744 1.09339 2.79346 3.11704 3.16016 3.29511 3.36924 3.39568 3.43362 4.02381 4.42227 4.50767 4.66488 5.07528 5.16078 5.25953 5.30376 5.66431 5.89170 5.94620 6.08899 6.19696 6.25796 6.30647 6.49024 6.51229 6.94436 7.09511 7.28252 7.32402 7.63976 7.66629 7.84058 8.04125 8.34634 8.78076 9.02956 9.55927 11.02631 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.027062 B = 0.004990 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.414822 B = 5609.853150 C = 5721.298291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C 0.222 3.778 4 H 0.022 0.978 5 C -0.503 4.503 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.514 5.514 14 C 0.486 3.514 15 N -0.646 5.646 16 H 0.440 0.560 17 C 0.060 3.940 18 C 0.076 3.924 19 C -0.101 4.101 20 C -0.094 4.094 21 C -0.142 4.142 22 C 0.094 3.906 23 F -0.138 7.138 24 O -0.243 6.243 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.033 0.967 28 H 0.101 0.899 29 H 0.041 0.959 30 H 0.262 0.738 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.332 11.709 -5.360 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C 0.115 3.885 4 H 0.039 0.961 5 C -0.542 4.542 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.257 5.257 14 C 0.173 3.827 15 N -0.284 5.284 16 H 0.282 0.718 17 C -0.043 4.043 18 C 0.025 3.975 19 C -0.120 4.120 20 C -0.114 4.114 21 C -0.162 4.162 22 C 0.070 3.930 23 F -0.117 7.117 24 O -0.140 6.140 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.119 0.881 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.782 10.890 -5.411 16.252 hybrid contribution 0.901 0.102 -0.060 0.909 sum -9.880 10.993 -5.471 15.760 Atomic orbital electron populations 1.21814 0.99354 0.99310 0.99809 1.21611 0.91558 0.98752 1.02874 1.19173 0.95601 0.90708 0.83008 0.96050 1.21119 0.90220 1.37573 1.05256 0.92056 1.24924 0.98568 0.95172 0.95455 1.69891 1.34875 1.38704 1.09516 0.86395 0.85056 0.77750 0.77973 1.19762 1.20970 1.20854 1.72769 1.14460 1.05265 1.33181 1.21856 0.93317 0.91257 0.76290 1.42061 1.50921 1.26442 1.08991 0.71782 1.18546 0.99112 0.92913 0.93696 1.19070 0.96989 0.91025 0.90367 1.20109 0.98020 0.93166 1.00746 1.20639 0.99628 0.97916 0.93248 1.20857 1.01566 0.99438 0.94341 1.16485 1.02941 0.96581 0.76943 1.91487 1.95356 1.95952 1.28881 1.85189 1.58969 1.36727 1.33102 0.93952 0.94513 0.94761 0.88053 0.94008 0.92842 0.83961 0.83756 0.83842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.80 37.16 0.36 -2.77 16 2 C -0.11 -2.76 5.45 -26.73 -0.15 -2.90 16 3 C 0.22 5.97 2.34 -69.08 -0.16 5.80 16 4 H 0.02 0.63 7.06 -51.93 -0.37 0.26 16 5 C -0.50 -14.52 8.84 -34.44 -0.30 -14.82 16 6 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -25.60 11.29 55.43 0.63 -24.98 16 9 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.51 -12.40 9.66 -57.20 -0.55 -12.95 16 14 C 0.49 10.23 8.86 -88.46 -0.78 9.44 16 15 N -0.65 -10.85 6.36 -11.86 -0.08 -10.93 16 16 H 0.44 6.33 8.96 -40.82 -0.37 5.97 16 17 C 0.06 0.91 7.22 -83.65 -0.60 0.31 16 18 C 0.08 1.22 7.33 -39.00 -0.29 0.94 16 19 C -0.10 -1.21 10.06 -39.45 -0.40 -1.60 16 20 C -0.09 -0.85 10.03 -39.57 -0.40 -1.25 16 21 C -0.14 -1.38 10.02 -39.49 -0.40 -1.77 16 22 C 0.09 1.19 7.31 -39.34 -0.29 0.90 16 23 F -0.14 -1.75 17.27 2.25 0.04 -1.71 16 24 O -0.24 -5.03 9.64 0.78 0.01 -5.02 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.03 0.71 7.75 -51.93 -0.40 0.31 16 28 H 0.10 2.77 5.95 -51.93 -0.31 2.46 16 29 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 292.10 15.07 4.40 4.40 Total: -1.00 -31.34 292.10 -7.59 -38.94 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -3.53 Total: 1.67 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -3.49 Total: -6.13 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.00 Total: -48.86 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: 0.01 Total: -5.02 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.34 -7.59 -38.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362662400.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.554 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds