Wall clock time and date at job start Mon Mar 30 2020 06:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47576 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47046 * 119.99929 * 9 7 5 12 12 H 1.48498 * 109.47240 * 239.99731 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.30370 * 120.00109 * 119.99565 * 13 3 2 15 15 N 1.37221 * 125.54417 * 179.71570 * 14 13 3 16 16 H 0.97003 * 126.43344 * 359.97438 * 15 14 13 17 17 C 1.39732 * 107.12814 * 179.84702 * 15 14 13 18 18 C 1.39358 * 106.84984 * 0.41185 * 17 15 14 19 19 C 1.38680 * 119.67794 * 179.72753 * 18 17 15 20 20 C 1.38157 * 120.00225 * 359.96871 * 19 18 17 21 21 C 1.38338 * 120.33267 * 0.03066 * 20 19 18 22 22 C 1.38383 * 120.11314 * 359.97438 * 21 20 19 23 23 F 1.35101 * 120.09755 * 179.97438 * 22 21 20 24 24 O 1.34716 * 125.53872 * 0.02726 * 14 13 3 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 31 31 H 1.08001 * 119.99634 * 179.97438 * 19 18 17 32 32 H 1.08006 * 119.83480 * 180.02562 * 20 19 18 33 33 H 1.07993 * 119.94744 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5988 1.5443 0.1931 11 1 6.4000 1.6156 2.6091 12 1 6.4962 -0.5190 1.4625 13 7 1.6524 2.0975 -1.2518 14 6 0.8968 3.1596 -1.2250 15 7 0.4715 3.8639 -2.3231 16 1 0.6763 3.6646 -3.2501 17 6 -0.3144 4.9204 -1.8554 18 6 -0.3324 4.8257 -0.4652 19 6 -1.0399 5.7591 0.2775 20 6 -1.7219 6.7767 -0.3612 21 6 -1.7042 6.8709 -1.7413 22 6 -1.0013 5.9446 -2.4914 23 9 -0.9846 6.0366 -3.8392 24 8 0.4115 3.7475 -0.1142 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8293 -0.0605 2.9501 31 1 -1.0577 5.6904 1.3552 32 1 -2.2718 7.5024 0.2199 33 1 -2.2399 7.6687 -2.2341 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362662400.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:33 Heat of formation + Delta-G solvation = -27.907360 kcal Electronic energy + Delta-G solvation = -19472.483324 eV Core-core repulsion = 16220.306231 eV Total energy + Delta-G solvation = -3252.177093 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 264.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.97672 -43.75549 -38.98641 -37.43702 -36.36773 -34.33762 -32.86526 -31.15813 -30.17960 -28.60533 -25.20634 -24.39056 -24.04965 -23.16824 -21.46587 -19.77808 -19.07744 -18.37444 -17.80629 -17.45637 -17.14003 -16.79169 -16.50718 -16.19399 -15.92942 -15.07860 -14.94347 -14.38075 -14.26990 -14.06591 -13.36439 -13.22731 -13.19540 -13.00011 -12.82019 -12.75767 -12.72276 -12.21313 -11.90804 -11.71333 -11.52256 -10.86269 -10.48462 -10.23518 -9.63788 -8.64538 -8.14220 -6.31596 -0.06483 0.08949 1.36605 1.38326 1.43427 1.51237 1.56980 1.85831 2.40162 2.44489 2.97312 3.09116 3.46948 3.80813 3.97198 4.14600 4.24220 4.35213 4.48602 4.49021 4.65171 4.81307 4.97872 5.03056 5.13811 5.17352 5.27218 5.34369 5.50762 5.58852 5.68868 5.90454 6.10317 6.20919 6.32034 6.73587 7.14012 7.40591 8.88311 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.027062 B = 0.004990 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.414822 B = 5609.853150 C = 5721.298291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.104 4.104 3 C 0.232 3.768 4 H -0.016 1.016 5 C -0.531 4.531 6 H 0.045 0.955 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.274 1.274 11 H -0.274 1.274 12 H -0.271 1.271 13 N -0.560 5.560 14 C 0.499 3.501 15 N -0.637 5.637 16 H 0.448 0.552 17 C 0.035 3.965 18 C 0.028 3.972 19 C -0.098 4.098 20 C -0.068 4.068 21 C -0.120 4.120 22 C 0.092 3.908 23 F -0.139 7.139 24 O -0.274 6.274 25 H 0.035 0.965 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.033 0.967 30 H 0.266 0.734 31 H 0.157 0.843 32 H 0.196 0.804 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.982 14.303 -5.535 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.143 4.143 3 C 0.124 3.876 4 H 0.002 0.998 5 C -0.570 4.570 6 H 0.063 0.937 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.791 3.209 10 H -0.199 1.199 11 H -0.200 1.200 12 H -0.197 1.197 13 N -0.305 5.305 14 C 0.186 3.814 15 N -0.277 5.277 16 H 0.291 0.709 17 C -0.066 4.066 18 C -0.021 4.021 19 C -0.117 4.117 20 C -0.087 4.087 21 C -0.139 4.139 22 C 0.068 3.932 23 F -0.117 7.117 24 O -0.171 6.171 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.175 0.825 32 H 0.213 0.787 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -12.487 13.548 -5.607 19.259 hybrid contribution 1.189 -0.406 -0.015 1.257 sum -11.298 13.142 -5.623 18.219 Atomic orbital electron populations 1.21640 0.96631 1.00913 0.99581 1.21451 0.94013 0.97761 1.01087 1.18830 0.94392 0.91218 0.83165 0.99807 1.21366 0.91715 1.38409 1.05486 0.93698 1.25731 1.03285 0.94446 0.94859 1.70004 1.36704 1.38732 1.09813 0.85381 0.79287 0.78230 0.77965 1.19856 1.19965 1.19661 1.72663 1.18464 1.08003 1.31405 1.21932 0.91585 0.90388 0.77500 1.41989 1.50865 1.26504 1.08386 0.70876 1.18830 1.00461 0.93657 0.93662 1.19706 0.99166 0.91576 0.91612 1.20624 0.96859 0.92504 1.01701 1.21268 0.97365 0.96762 0.93312 1.21459 0.99269 0.98614 0.94557 1.16823 1.02837 0.96345 0.77156 1.91493 1.95356 1.95899 1.29002 1.85090 1.60045 1.38647 1.33324 0.94549 0.91844 0.94500 0.90491 0.94784 0.92435 0.82490 0.78665 0.79621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 9.80 71.98 0.71 -5.06 16 2 C -0.10 -5.53 5.45 30.59 0.17 -5.37 16 3 C 0.23 13.25 2.34 44.24 0.10 13.35 16 4 H -0.02 -0.99 7.06 -2.38 -0.02 -1.01 16 5 C -0.53 -32.29 8.84 25.60 0.23 -32.06 16 6 H 0.04 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.02 0.94 5.29 84.66 0.45 1.39 16 8 N -0.91 -54.22 11.29 21.45 0.24 -53.97 16 9 Si 0.97 45.60 29.54 68.60 2.03 47.62 16 10 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 N -0.56 -28.66 9.66 -449.23 -4.34 -33.00 16 14 C 0.50 22.13 8.86 179.59 1.59 23.72 16 15 N -0.64 -22.11 6.36 -302.15 -1.92 -24.03 16 16 H 0.45 13.36 8.96 -92.71 -0.83 12.53 16 17 C 0.03 1.04 7.22 38.28 0.28 1.32 16 18 C 0.03 0.89 7.33 22.65 0.17 1.06 16 19 C -0.10 -2.09 10.06 22.36 0.22 -1.86 16 20 C -0.07 -0.86 10.03 22.27 0.22 -0.64 16 21 C -0.12 -1.69 10.02 22.33 0.22 -1.47 16 22 C 0.09 2.07 7.31 22.43 0.16 2.24 16 23 F -0.14 -3.19 17.27 44.97 0.78 -2.41 16 24 O -0.27 -11.93 9.64 -20.13 -0.19 -12.12 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.04 1.58 7.75 -2.38 -0.02 1.56 16 28 H 0.08 4.41 5.95 -2.39 -0.01 4.40 16 29 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 31 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.20 0.64 8.06 -2.91 -0.02 0.61 16 33 H 0.19 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -73.57 292.10 1.43 -72.14 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.32 Total: 9.15 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 4.52 Total: -3.38 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -6.02 Total: -111.01 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.19 Total: -12.12 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -73.57 1.43 -72.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362662400.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.237 kcal (2) G-P(sol) polarization free energy of solvation -73.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds