Wall clock time and date at job start Mon Mar 30 2020 07:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38214 * 120.00753 * 2 1 4 4 C 1.38224 * 120.02197 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.97609 * 180.02562 * 4 3 2 6 6 H 1.08997 * 110.55006 * 23.54928 * 5 4 3 7 7 C 1.54992 * 110.61572 * 260.49931 * 5 4 3 8 8 C 1.54815 * 102.09297 * 204.47025 * 7 5 4 9 9 C 1.54106 * 104.18115 * 20.88492 * 8 7 5 10 10 C 1.52994 * 109.87745 * 121.45549 * 9 8 7 11 11 C 1.50701 * 109.99801 * 242.52920 * 9 8 7 12 12 H 1.08002 * 120.00603 * 359.37077 * 11 9 8 13 13 C 1.37878 * 119.99836 * 179.36351 * 11 9 8 14 14 N 1.31519 * 120.00053 * 180.02562 * 13 11 9 15 15 Si 1.86802 * 119.99800 * 359.97438 * 13 11 9 16 16 H 1.48500 * 109.46756 * 90.00466 * 15 13 11 17 17 H 1.48505 * 109.47017 * 209.99815 * 15 13 11 18 18 H 1.48492 * 109.47478 * 330.00069 * 15 13 11 19 19 O 1.43734 * 107.29646 * 2.02763 * 9 8 7 20 20 C 1.38265 * 120.05408 * 359.97438 * 4 3 2 21 21 C 1.38183 * 120.02323 * 359.97438 * 20 4 3 22 22 C 1.38437 * 120.01160 * 180.27526 * 2 1 3 23 23 F 1.35099 * 120.02745 * 0.02562 * 22 2 1 24 24 H 1.09000 * 109.47115 * 90.00147 * 1 2 3 25 25 H 1.09002 * 109.46520 * 209.99700 * 1 2 3 26 26 H 1.08995 * 109.47261 * 329.99719 * 1 2 3 27 27 H 1.08000 * 119.99525 * 0.03989 * 3 2 1 28 28 H 1.09002 * 110.91220 * 322.67380 * 7 5 4 29 29 H 1.09000 * 110.91024 * 86.27694 * 7 5 4 30 30 H 1.08995 * 110.49272 * 262.20772 * 8 7 5 31 31 H 1.08998 * 110.48327 * 139.55536 * 8 7 5 32 32 H 1.09007 * 109.47084 * 300.70895 * 10 9 8 33 33 H 1.09002 * 109.48014 * 60.71116 * 10 9 8 34 34 H 1.09002 * 109.47326 * 180.71231 * 10 9 8 35 35 H 0.96996 * 120.00072 * 180.02562 * 14 13 11 36 36 H 1.07999 * 119.98941 * 180.02562 * 20 4 3 37 37 H 1.08002 * 120.01017 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.3332 2.5029 0.0000 6 1 3.7139 3.3013 0.4086 7 6 4.8126 2.8571 -1.4307 8 6 6.0237 3.7792 -1.1479 9 6 6.4336 3.4318 0.2964 10 6 7.8860 2.9520 0.3239 11 6 6.2770 4.6414 1.1816 12 1 5.9305 5.5752 0.7639 13 6 6.5760 4.5560 2.5248 14 7 6.4389 5.6114 3.2975 15 14 7.1745 2.9407 3.2476 16 1 8.6562 2.8818 3.1681 17 1 6.7509 2.8468 4.6678 18 1 6.5922 1.8097 2.4815 19 8 5.5629 2.3806 0.7467 20 6 4.2733 0.0006 -0.0005 21 6 3.5843 -1.1972 0.0005 22 6 2.1995 -1.1987 -0.0058 23 9 1.5248 -2.3692 -0.0119 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3632 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6584 2.1322 0.0007 28 1 5.1228 1.9619 -1.9698 29 1 4.0371 3.3910 -1.9798 30 1 5.7308 4.8265 -1.2200 31 1 6.8383 3.5614 -1.8386 32 1 7.9903 2.0727 -0.3120 33 1 8.5378 3.7449 -0.0430 34 1 8.1650 2.6962 1.3461 35 1 6.6496 5.5514 4.2424 36 1 5.3533 0.0021 -0.0005 37 1 4.1257 -2.1317 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379880627.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:21 Heat of formation + Delta-G solvation = -67.301801 kcal Electronic energy + Delta-G solvation = -20220.403113 eV Core-core repulsion = 17070.058093 eV Total energy + Delta-G solvation = -3150.345020 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.81465 -39.58268 -38.14546 -33.40647 -32.53978 -31.52718 -31.29114 -29.49091 -26.91737 -25.26263 -24.83368 -22.49640 -21.90852 -20.00906 -19.42751 -17.42116 -16.72767 -16.51643 -15.62464 -15.57423 -15.40170 -14.40709 -14.17109 -13.58168 -13.41988 -13.20508 -13.11067 -12.98654 -12.86884 -12.43205 -12.25484 -12.13556 -11.98911 -11.41632 -11.32171 -11.07790 -10.89401 -10.49886 -10.41933 -10.11336 -9.88641 -9.68511 -8.98953 -8.78698 -8.57723 -8.41136 -8.11699 -6.10770 -4.19190 1.27262 1.35548 3.35765 3.47061 3.66411 3.69983 4.35912 4.51390 4.59604 4.79519 4.88968 5.12577 5.27567 5.31405 5.42686 5.47867 5.52237 5.57279 5.66762 5.77191 5.90294 6.04795 6.06663 6.17583 6.23653 6.30765 6.32617 6.41816 6.43019 6.54115 6.58620 6.70209 6.80620 6.88571 7.04264 7.28024 7.68519 8.04998 8.48780 8.88915 9.54963 11.00126 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.025158 B = 0.005897 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.698872 B = 4747.307731 C = 4912.562806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.123 4.123 3 C -0.087 4.087 4 C -0.070 4.070 5 C 0.117 3.883 6 H 0.078 0.922 7 C -0.141 4.141 8 C -0.130 4.130 9 C 0.188 3.812 10 C -0.138 4.138 11 C -0.533 4.533 12 H 0.075 0.925 13 C 0.085 3.915 14 N -0.894 5.894 15 Si 0.880 3.120 16 H -0.289 1.289 17 H -0.303 1.303 18 H -0.224 1.224 19 O -0.367 6.367 20 C -0.073 4.073 21 C -0.154 4.154 22 C 0.083 3.917 23 F -0.145 7.145 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.132 0.868 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.264 0.736 36 H 0.137 0.863 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.381 -10.839 -8.755 15.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.124 4.124 3 C -0.105 4.105 4 C -0.071 4.071 5 C 0.058 3.942 6 H 0.096 0.904 7 C -0.179 4.179 8 C -0.168 4.168 9 C 0.150 3.850 10 C -0.195 4.195 11 C -0.570 4.570 12 H 0.093 0.907 13 C -0.119 4.119 14 N -0.531 5.531 15 Si 0.711 3.289 16 H -0.217 1.217 17 H -0.232 1.232 18 H -0.148 1.148 19 O -0.288 6.288 20 C -0.091 4.091 21 C -0.172 4.172 22 C 0.064 3.936 23 F -0.124 7.124 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.150 0.850 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.155 0.845 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.345 -10.963 -8.435 15.662 hybrid contribution 0.278 -0.720 0.499 0.919 sum -7.067 -11.683 -7.936 15.793 Atomic orbital electron populations 1.20687 0.90408 1.03142 1.02485 1.19820 0.96740 0.91852 1.04014 1.20762 0.93330 0.97113 0.99328 1.20041 0.93218 0.95558 0.98259 1.21665 0.89212 0.92025 0.91249 0.90416 1.23071 0.98489 0.99638 0.96687 1.22894 0.96383 0.99852 0.97683 1.20082 0.87209 0.86628 0.91034 1.22118 0.97470 0.99487 1.00384 1.21274 1.46776 0.95628 0.93372 0.90709 1.25005 0.93570 0.96335 0.97020 1.69932 1.47678 1.29611 1.05884 0.87010 0.77808 0.86746 0.77367 1.21674 1.23165 1.14807 1.89118 1.24040 1.54081 1.61572 1.20945 1.00962 0.90527 0.96620 1.21119 0.92083 0.99727 1.04310 1.17518 0.90065 0.80709 1.05347 1.91438 1.80515 1.46236 1.94193 0.91092 0.91484 0.90957 0.84985 0.91674 0.91429 0.90889 0.92341 0.94562 0.91870 0.93571 0.92637 0.84489 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.83 36.01 0.35 -0.81 16 2 C -0.12 -1.67 5.89 -104.55 -0.62 -2.28 16 3 C -0.09 -1.25 9.35 -39.60 -0.37 -1.62 16 4 C -0.07 -1.15 5.06 -104.61 -0.53 -1.68 16 5 C 0.12 2.17 3.49 -26.83 -0.09 2.08 16 6 H 0.08 1.54 8.08 -51.93 -0.42 1.12 16 7 C -0.14 -2.31 6.57 -24.72 -0.16 -2.47 16 8 C -0.13 -2.44 6.27 -25.20 -0.16 -2.60 16 9 C 0.19 4.24 0.70 -91.20 -0.06 4.17 16 10 C -0.14 -2.91 8.16 37.15 0.30 -2.61 16 11 C -0.53 -14.52 8.80 -34.44 -0.30 -14.82 16 12 H 0.07 2.19 7.59 -52.49 -0.40 1.79 16 13 C 0.08 2.43 5.45 -17.82 -0.10 2.33 16 14 N -0.89 -27.18 13.96 55.43 0.77 -26.40 16 15 Si 0.88 22.34 23.93 -169.99 -4.07 18.28 16 16 H -0.29 -7.16 6.87 56.52 0.39 -6.77 16 17 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 18 H -0.22 -5.52 5.36 56.52 0.30 -5.22 16 19 O -0.37 -8.21 6.74 -35.23 -0.24 -8.44 16 20 C -0.07 -1.14 9.38 -39.59 -0.37 -1.51 16 21 C -0.15 -2.17 10.03 -39.51 -0.40 -2.56 16 22 C 0.08 1.17 7.24 -39.42 -0.29 0.89 16 23 F -0.15 -2.02 16.48 2.25 0.04 -1.98 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.69 7.65 -51.93 -0.40 0.29 16 26 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 27 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.06 0.99 8.05 -51.93 -0.42 0.57 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.41 7.40 -51.93 -0.38 1.02 16 31 H 0.06 0.98 7.70 -51.93 -0.40 0.58 16 32 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.05 1.05 3.25 -51.93 -0.17 0.88 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 36 H 0.14 2.18 7.63 -52.49 -0.40 1.77 16 37 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 299.09 15.07 4.51 4.51 Total: -1.00 -30.28 299.09 -6.97 -37.24 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.19 Total: 0.29 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -2.79 Total: -23.49 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.77 Total: -26.40 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.24 Total: -8.44 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.07 Total: 18.28 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.28 -6.97 -37.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379880627.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.060 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds