Wall clock time and date at job start Mon Mar 30 2020 07:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38225 * 120.01592 * 2 1 4 4 C 1.38217 * 120.02811 * 180.02562 * 3 2 1 5 5 C 1.38275 * 120.05337 * 359.95316 * 4 3 2 6 6 C 1.50691 * 119.98701 * 179.74861 * 5 4 3 7 7 H 1.09006 * 110.27840 * 340.63317 * 6 5 4 8 8 C 1.54945 * 110.31314 * 102.83396 * 6 5 4 9 9 C 1.55303 * 100.94232 * 155.35659 * 8 6 5 10 10 C 1.54382 * 102.25649 * 325.86710 * 9 8 6 11 11 C 1.52998 * 109.83119 * 140.87099 * 10 9 8 12 12 C 1.50701 * 109.90444 * 261.80085 * 10 9 8 13 13 H 1.08003 * 119.99935 * 359.63105 * 12 10 9 14 14 C 1.37874 * 119.99946 * 179.63049 * 12 10 9 15 15 N 1.31518 * 119.99858 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00309 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47227 * 89.99467 * 16 14 12 18 18 H 1.48492 * 109.47320 * 210.00133 * 16 14 12 19 19 H 1.48503 * 109.46530 * 330.00020 * 16 14 12 20 20 O 1.43240 * 107.58331 * 21.35437 * 10 9 8 21 21 C 1.38176 * 120.02246 * 0.02562 * 5 4 3 22 22 C 1.38443 * 120.01480 * 180.02562 * 2 1 3 23 23 F 1.35099 * 120.02154 * 359.96524 * 22 2 1 24 24 H 1.08998 * 109.46769 * 90.00223 * 1 2 3 25 25 H 1.08999 * 109.46989 * 210.00162 * 1 2 3 26 26 H 1.08997 * 109.46956 * 330.00728 * 1 2 3 27 27 H 1.08000 * 119.98148 * 0.02562 * 3 2 1 28 28 H 1.07997 * 119.97688 * 179.97438 * 4 3 2 29 29 H 1.09000 * 111.12315 * 273.27703 * 8 6 5 30 30 H 1.09003 * 111.12338 * 37.43725 * 8 6 5 31 31 H 1.09003 * 110.84802 * 207.67116 * 9 8 6 32 32 H 1.09004 * 110.84731 * 84.05750 * 9 8 6 33 33 H 1.09002 * 109.47209 * 300.40938 * 11 10 9 34 34 H 1.09000 * 109.47406 * 60.41537 * 11 10 9 35 35 H 1.09002 * 109.46752 * 180.41692 * 11 10 9 36 36 H 0.97005 * 119.99892 * 179.97438 * 15 14 12 37 37 H 1.08002 * 120.01117 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2734 0.0005 -0.0001 6 6 5.7802 0.0025 -0.0064 7 1 6.1553 0.9667 -0.3497 8 6 6.3245 -0.3156 1.4090 9 6 7.7259 -0.8890 1.0640 10 6 7.4626 -1.6161 -0.2722 11 6 8.6462 -1.4071 -1.2189 12 6 7.2607 -3.0888 -0.0239 13 1 7.3185 -3.4798 0.9812 14 6 7.0021 -3.9368 -1.0798 15 7 6.9311 -3.4605 -2.3036 16 14 6.7510 -5.7621 -0.7720 17 1 5.3108 -6.0294 -0.5276 18 1 7.2028 -6.5311 -1.9592 19 1 7.5399 -6.1768 0.4159 20 8 6.2767 -1.0528 -0.8450 21 6 3.5843 -1.1972 0.0004 22 6 2.1995 -1.1988 -0.0005 23 9 1.5248 -2.3692 -0.0003 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.6584 2.1322 0.0004 28 1 4.1200 2.1328 -0.0010 29 1 6.4076 0.5897 2.0105 30 1 5.7068 -1.0618 1.9088 31 1 8.0568 -1.5913 1.8292 32 1 8.4518 -0.0866 0.9324 33 1 8.7808 -0.3411 -1.4025 34 1 9.5500 -1.8148 -0.7662 35 1 8.4509 -1.9165 -2.1626 36 1 6.7495 -4.0572 -3.0465 37 1 4.1256 -2.1318 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380111433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:30 Heat of formation + Delta-G solvation = -75.829080 kcal Electronic energy + Delta-G solvation = -20370.201436 eV Core-core repulsion = 17219.486645 eV Total energy + Delta-G solvation = -3150.714791 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.49568 -39.32967 -37.86299 -33.56493 -32.32075 -31.00554 -30.17633 -29.74624 -27.04118 -25.23507 -23.88737 -22.50147 -21.42822 -20.20175 -19.37716 -17.08173 -16.48825 -16.18210 -15.37231 -15.30587 -14.83735 -14.47686 -14.00228 -13.48224 -13.26696 -13.22765 -12.95236 -12.69397 -12.52384 -12.17222 -11.90430 -11.60008 -11.31981 -11.25480 -10.98120 -10.87173 -10.69319 -10.48525 -10.41176 -10.24879 -9.90422 -9.59799 -9.14959 -8.48777 -8.47074 -8.21379 -7.85167 -5.94430 -4.10988 1.46304 1.60138 3.31286 3.38769 3.40324 3.88100 4.42902 4.59045 4.86411 4.94350 5.08413 5.31158 5.31480 5.50265 5.55591 5.60857 5.63834 5.71987 5.83898 5.97371 6.08170 6.13393 6.31564 6.35841 6.41246 6.53511 6.62630 6.63112 6.75535 6.79355 6.91791 7.01668 7.14968 7.30010 7.36595 7.78699 8.09814 8.37149 8.61135 9.04228 9.60291 11.07093 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019038 B = 0.007370 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.421124 B = 3798.059112 C = 4804.567336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.134 4.134 3 C -0.102 4.102 4 C -0.126 4.126 5 C -0.045 4.045 6 C 0.110 3.890 7 H 0.059 0.941 8 C -0.138 4.138 9 C -0.142 4.142 10 C 0.227 3.773 11 C -0.140 4.140 12 C -0.532 4.532 13 H 0.058 0.942 14 C 0.082 3.918 15 N -0.858 5.858 16 Si 0.883 3.117 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.274 1.274 20 O -0.342 6.342 21 C -0.112 4.112 22 C 0.089 3.911 23 F -0.143 7.143 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.011 0.989 34 H 0.036 0.964 35 H 0.090 0.910 36 H 0.259 0.741 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.291 8.956 4.991 12.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.135 4.135 3 C -0.120 4.120 4 C -0.144 4.144 5 C -0.045 4.045 6 C 0.052 3.948 7 H 0.077 0.923 8 C -0.176 4.176 9 C -0.180 4.180 10 C 0.190 3.810 11 C -0.198 4.198 12 C -0.569 4.569 13 H 0.076 0.924 14 C -0.123 4.123 15 N -0.494 5.494 16 Si 0.710 3.290 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.199 1.199 20 O -0.262 6.262 21 C -0.130 4.130 22 C 0.070 3.930 23 F -0.121 7.121 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.030 0.970 34 H 0.055 0.945 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.424 8.782 4.598 12.385 hybrid contribution -0.176 -1.178 0.271 1.222 sum -7.600 7.604 4.868 11.802 Atomic orbital electron populations 1.20654 0.90785 1.02720 1.02361 1.19827 0.96514 0.92157 1.04971 1.20714 0.93877 0.96535 1.00872 1.20985 0.93911 0.97687 1.01820 1.19923 0.96107 0.92025 0.96494 1.21580 0.88251 0.93569 0.91449 0.92309 1.23156 0.97799 1.00233 0.96414 1.23228 0.95161 0.99089 1.00532 1.19684 0.82696 0.91924 0.86706 1.21997 0.96943 0.97123 1.03743 1.21209 1.51257 0.91059 0.93421 0.92376 1.24981 0.93987 0.98186 0.95166 1.69954 1.46319 1.34587 0.98582 0.86759 0.78636 0.85752 0.77825 1.20506 1.21151 1.19874 1.88831 1.44193 1.47652 1.45514 1.21250 0.91421 1.01095 0.99277 1.17611 0.90204 0.80693 1.04535 1.91450 1.80312 1.46327 1.94048 0.91260 0.91554 0.91427 0.85634 0.85779 0.92018 0.90831 0.91161 0.92920 0.96981 0.94477 0.89159 0.93056 0.83214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.84 36.00 0.35 -0.91 16 2 C -0.13 -2.00 5.89 -104.55 -0.62 -2.62 16 3 C -0.10 -1.38 9.70 -39.59 -0.38 -1.77 16 4 C -0.13 -1.89 9.68 -39.58 -0.38 -2.27 16 5 C -0.05 -0.83 5.03 -104.64 -0.53 -1.36 16 6 C 0.11 2.18 3.64 -26.86 -0.10 2.09 16 7 H 0.06 1.07 8.04 -51.93 -0.42 0.66 16 8 C -0.14 -2.52 6.55 -24.48 -0.16 -2.68 16 9 C -0.14 -2.87 6.08 -24.79 -0.15 -3.02 16 10 C 0.23 5.54 0.82 -91.05 -0.07 5.46 16 11 C -0.14 -3.38 8.52 37.16 0.32 -3.06 16 12 C -0.53 -14.28 8.23 -34.44 -0.28 -14.56 16 13 H 0.06 1.54 7.49 -52.48 -0.39 1.15 16 14 C 0.08 2.26 5.26 -17.82 -0.09 2.16 16 15 N -0.86 -24.48 10.93 55.43 0.61 -23.88 16 16 Si 0.88 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 O -0.34 -8.53 9.17 -35.23 -0.32 -8.85 16 21 C -0.11 -2.23 9.26 -39.51 -0.37 -2.60 16 22 C 0.09 1.60 7.24 -39.42 -0.29 1.31 16 23 F -0.14 -2.65 16.48 2.25 0.04 -2.61 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.78 7.64 -51.93 -0.40 0.38 16 26 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 27 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.12 1.54 8.05 -52.49 -0.42 1.12 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.40 7.97 -51.93 -0.41 0.98 16 31 H 0.07 1.40 7.61 -51.93 -0.40 1.00 16 32 H 0.05 0.96 7.85 -51.93 -0.41 0.56 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.15 3.45 7.76 -52.49 -0.41 3.04 16 LS Contribution 308.62 15.07 4.65 4.65 Total: -1.00 -29.20 308.62 -8.04 -37.23 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.24 Total: 1.08 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -2.75 Total: -23.82 kcal Atomic # 7 Polarization: -24.48 SS G_CDS: 0.61 Total: -23.88 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.32 Total: -8.85 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.20 -8.04 -37.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380111433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.595 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds