Wall clock time and date at job start Mon Mar 30 2020 07:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38225 * 120.01592 * 2 1 4 4 C 1.38217 * 120.02811 * 180.02562 * 3 2 1 5 5 C 1.38275 * 120.05337 * 359.95316 * 4 3 2 6 6 C 1.50691 * 119.98701 * 179.74861 * 5 4 3 7 7 H 1.09006 * 110.27840 * 340.63317 * 6 5 4 8 8 C 1.54945 * 110.31314 * 102.83396 * 6 5 4 9 9 C 1.55303 * 100.94232 * 155.35659 * 8 6 5 10 10 C 1.54382 * 102.25649 * 325.86710 * 9 8 6 11 11 C 1.52998 * 109.83119 * 140.87099 * 10 9 8 12 12 C 1.50701 * 109.90444 * 261.80085 * 10 9 8 13 13 H 1.08003 * 119.99935 * 359.63105 * 12 10 9 14 14 C 1.37874 * 119.99946 * 179.63049 * 12 10 9 15 15 N 1.31518 * 119.99858 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00309 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47227 * 89.99467 * 16 14 12 18 18 H 1.48492 * 109.47320 * 210.00133 * 16 14 12 19 19 H 1.48503 * 109.46530 * 330.00020 * 16 14 12 20 20 O 1.43240 * 107.58331 * 21.35437 * 10 9 8 21 21 C 1.38176 * 120.02246 * 0.02562 * 5 4 3 22 22 C 1.38443 * 120.01480 * 180.02562 * 2 1 3 23 23 F 1.35099 * 120.02154 * 359.96524 * 22 2 1 24 24 H 1.08998 * 109.46769 * 90.00223 * 1 2 3 25 25 H 1.08999 * 109.46989 * 210.00162 * 1 2 3 26 26 H 1.08997 * 109.46956 * 330.00728 * 1 2 3 27 27 H 1.08000 * 119.98148 * 0.02562 * 3 2 1 28 28 H 1.07997 * 119.97688 * 179.97438 * 4 3 2 29 29 H 1.09000 * 111.12315 * 273.27703 * 8 6 5 30 30 H 1.09003 * 111.12338 * 37.43725 * 8 6 5 31 31 H 1.09003 * 110.84802 * 207.67116 * 9 8 6 32 32 H 1.09004 * 110.84731 * 84.05750 * 9 8 6 33 33 H 1.09002 * 109.47209 * 300.40938 * 11 10 9 34 34 H 1.09000 * 109.47406 * 60.41537 * 11 10 9 35 35 H 1.09002 * 109.46752 * 180.41692 * 11 10 9 36 36 H 0.97005 * 119.99892 * 179.97438 * 15 14 12 37 37 H 1.08002 * 120.01117 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2734 0.0005 -0.0001 6 6 5.7802 0.0025 -0.0064 7 1 6.1553 0.9667 -0.3497 8 6 6.3245 -0.3156 1.4090 9 6 7.7259 -0.8890 1.0640 10 6 7.4626 -1.6161 -0.2722 11 6 8.6462 -1.4071 -1.2189 12 6 7.2607 -3.0888 -0.0239 13 1 7.3185 -3.4798 0.9812 14 6 7.0021 -3.9368 -1.0798 15 7 6.9311 -3.4605 -2.3036 16 14 6.7510 -5.7621 -0.7720 17 1 5.3108 -6.0294 -0.5276 18 1 7.2028 -6.5311 -1.9592 19 1 7.5399 -6.1768 0.4159 20 8 6.2767 -1.0528 -0.8450 21 6 3.5843 -1.1972 0.0004 22 6 2.1995 -1.1988 -0.0005 23 9 1.5248 -2.3692 -0.0003 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.6584 2.1322 0.0004 28 1 4.1200 2.1328 -0.0010 29 1 6.4076 0.5897 2.0105 30 1 5.7068 -1.0618 1.9088 31 1 8.0568 -1.5913 1.8292 32 1 8.4518 -0.0866 0.9324 33 1 8.7808 -0.3411 -1.4025 34 1 9.5500 -1.8148 -0.7662 35 1 8.4509 -1.9165 -2.1626 36 1 6.7495 -4.0572 -3.0465 37 1 4.1256 -2.1318 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380111433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:30 Heat of formation + Delta-G solvation = -91.233609 kcal Electronic energy + Delta-G solvation = -20370.869427 eV Core-core repulsion = 17219.486645 eV Total energy + Delta-G solvation = -3151.382781 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.90219 -40.77796 -39.36047 -35.24604 -33.91700 -32.71597 -31.48566 -31.34629 -28.38362 -27.27204 -25.38618 -23.80613 -22.81468 -21.65854 -21.16270 -18.83921 -18.04170 -17.60645 -16.74337 -16.68523 -16.54236 -16.22337 -15.63768 -15.02154 -14.67395 -14.47138 -14.30229 -14.25599 -13.96485 -13.49613 -13.25771 -13.20709 -13.13169 -12.84181 -12.52506 -12.49944 -12.30174 -12.23223 -12.04617 -11.99021 -11.54633 -11.29241 -10.95624 -10.58372 -9.87129 -9.71871 -9.36681 -8.03161 -6.24690 0.19913 0.32039 1.34886 1.37772 1.45261 2.40144 2.60029 3.12490 3.30329 3.58876 3.78122 3.88439 3.99739 4.02173 4.24229 4.25238 4.44676 4.61098 4.64680 4.76907 4.78390 4.80780 4.89464 4.94012 5.04895 5.10991 5.13828 5.20583 5.24933 5.28831 5.39385 5.42568 5.42970 5.65246 5.76514 6.02671 6.13038 6.36134 6.67008 7.15413 7.50696 8.96801 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019038 B = 0.007370 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.421124 B = 3798.059112 C = 4804.567336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.126 4.126 3 C -0.087 4.087 4 C -0.114 4.114 5 C -0.065 4.065 6 C 0.102 3.898 7 H 0.081 0.919 8 C -0.127 4.127 9 C -0.137 4.137 10 C 0.212 3.788 11 C -0.134 4.134 12 C -0.543 4.543 13 H 0.051 0.949 14 C 0.036 3.964 15 N -0.887 5.887 16 Si 0.936 3.064 17 H -0.286 1.286 18 H -0.281 1.281 19 H -0.264 1.264 20 O -0.379 6.379 21 C -0.142 4.142 22 C 0.061 3.939 23 F -0.155 7.155 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.175 0.825 28 H 0.160 0.840 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.031 0.969 34 H 0.042 0.958 35 H 0.056 0.944 36 H 0.256 0.744 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.489 11.953 6.072 15.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.127 4.127 3 C -0.105 4.105 4 C -0.132 4.132 5 C -0.066 4.066 6 C 0.044 3.956 7 H 0.099 0.901 8 C -0.165 4.165 9 C -0.175 4.175 10 C 0.175 3.825 11 C -0.192 4.192 12 C -0.581 4.581 13 H 0.069 0.931 14 C -0.166 4.166 15 N -0.524 5.524 16 Si 0.762 3.238 17 H -0.213 1.213 18 H -0.206 1.206 19 H -0.188 1.188 20 O -0.299 6.299 21 C -0.161 4.161 22 C 0.042 3.958 23 F -0.134 7.134 24 H 0.098 0.902 25 H 0.078 0.922 26 H 0.120 0.880 27 H 0.193 0.807 28 H 0.178 0.822 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.615 11.775 5.694 15.662 hybrid contribution 0.140 -2.030 -0.050 2.035 sum -8.474 9.745 5.644 14.094 Atomic orbital electron populations 1.20764 0.88123 1.04119 1.03449 1.20291 0.98462 0.91171 1.02793 1.21275 0.93455 0.97706 0.98015 1.21368 0.94784 0.97389 0.99673 1.19950 0.95509 0.92798 0.98294 1.21879 0.89326 0.92947 0.91485 0.90102 1.23102 0.95903 1.01322 0.96151 1.23140 0.96952 0.99395 0.98025 1.19760 0.82731 0.91174 0.88842 1.21886 0.97218 0.97934 1.02160 1.21584 1.50376 0.93251 0.92923 0.93111 1.25629 0.94156 1.01710 0.95127 1.70096 1.47774 1.35462 0.99102 0.85925 0.78009 0.81823 0.78074 1.21270 1.20625 1.18820 1.88748 1.44473 1.49479 1.47180 1.20967 0.92479 1.00024 1.02617 1.17890 0.89753 0.81703 1.06416 1.91404 1.80328 1.47332 1.94359 0.90180 0.92217 0.88035 0.80748 0.82208 0.87878 0.92710 0.91518 0.90506 0.94982 0.93945 0.92495 0.93508 0.88251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 9.84 71.24 0.70 -1.43 16 2 C -0.13 -3.46 5.89 -19.82 -0.12 -3.57 16 3 C -0.09 -1.96 9.70 22.26 0.22 -1.74 16 4 C -0.11 -3.00 9.68 22.27 0.22 -2.78 16 5 C -0.07 -2.36 5.03 -19.87 -0.10 -2.46 16 6 C 0.10 3.94 3.64 30.51 0.11 4.05 16 7 H 0.08 2.73 8.04 -2.38 -0.02 2.71 16 8 C -0.13 -4.47 6.55 32.05 0.21 -4.26 16 9 C -0.14 -5.41 6.08 31.85 0.19 -5.22 16 10 C 0.21 10.54 0.82 -11.07 -0.01 10.53 16 11 C -0.13 -6.53 8.52 71.98 0.61 -5.92 16 12 C -0.54 -30.27 8.23 25.60 0.21 -30.06 16 13 H 0.05 2.80 7.49 -2.91 -0.02 2.78 16 14 C 0.04 2.05 5.26 84.65 0.45 2.50 16 15 N -0.89 -52.94 10.93 21.45 0.23 -52.70 16 16 Si 0.94 45.27 29.54 68.60 2.03 47.30 16 17 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 18 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 20 O -0.38 -19.36 9.17 -148.98 -1.37 -20.72 16 21 C -0.14 -5.94 9.26 22.31 0.21 -5.73 16 22 C 0.06 2.25 7.24 22.38 0.16 2.42 16 23 F -0.16 -6.04 16.48 44.97 0.74 -5.29 16 24 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 1.27 7.64 -2.39 -0.02 1.25 16 26 H 0.10 1.34 8.09 -2.39 -0.02 1.32 16 27 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 28 H 0.16 3.04 8.05 -2.91 -0.02 3.02 16 29 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.05 2.11 7.97 -2.39 -0.02 2.09 16 31 H 0.07 2.63 7.61 -2.39 -0.02 2.61 16 32 H 0.08 2.62 7.85 -2.39 -0.02 2.60 16 33 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 3.15 6.04 -2.39 -0.01 3.14 16 36 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 37 H 0.10 5.07 7.76 -2.91 -0.02 5.05 16 Total: -1.00 -68.05 308.62 5.75 -62.30 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 1.05 Total: 12.82 kcal Atomic # 6 Polarization: -46.75 SS G_CDS: 3.06 Total: -43.69 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.23 Total: -52.70 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -1.37 Total: -20.72 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 0.74 Total: -5.29 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -68.05 5.75 -62.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380111433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.938 kcal (2) G-P(sol) polarization free energy of solvation -68.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds