Wall clock time and date at job start Mon Mar 30 2020 07:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38225 * 120.01264 * 2 1 4 4 C 1.38225 * 120.02437 * 180.02562 * 3 2 1 5 5 C 1.38262 * 120.05278 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.98807 * 179.97438 * 5 4 3 7 7 H 1.08997 * 110.27400 * 27.08506 * 6 5 4 8 8 C 1.54942 * 110.30666 * 264.99850 * 6 5 4 9 9 C 1.55302 * 100.94317 * 204.63750 * 8 6 5 10 10 C 1.54384 * 102.25327 * 34.13280 * 9 8 6 11 11 C 1.53000 * 109.83471 * 219.13229 * 10 9 8 12 12 C 1.50702 * 109.83146 * 98.24469 * 10 9 8 13 13 H 1.08004 * 119.99441 * 0.02562 * 12 10 9 14 14 C 1.37870 * 120.00409 * 180.02562 * 12 10 9 15 15 N 1.31514 * 119.99712 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00329 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47069 * 60.00069 * 16 14 12 18 18 H 1.48498 * 109.46990 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47030 * 300.00062 * 16 14 12 20 20 O 1.43241 * 107.58337 * 338.64491 * 10 9 8 21 21 C 1.38180 * 120.02743 * 0.02562 * 5 4 3 22 22 C 1.38436 * 120.01479 * 180.02562 * 2 1 3 23 23 F 1.35099 * 120.02621 * 359.97438 * 22 2 1 24 24 H 1.08997 * 109.47007 * 90.00149 * 1 2 3 25 25 H 1.09004 * 109.46709 * 210.00060 * 1 2 3 26 26 H 1.08995 * 109.47259 * 329.99815 * 1 2 3 27 27 H 1.07994 * 119.98533 * 0.29822 * 3 2 1 28 28 H 1.07997 * 119.96966 * 180.02562 * 4 3 2 29 29 H 1.09000 * 111.12915 * 322.55992 * 8 6 5 30 30 H 1.09003 * 111.12702 * 86.72436 * 8 6 5 31 31 H 1.09003 * 110.85384 * 152.32514 * 9 8 6 32 32 H 1.09006 * 110.84938 * 275.94799 * 9 8 6 33 33 H 1.09004 * 109.46592 * 59.99714 * 11 10 9 34 34 H 1.08997 * 109.47150 * 179.97438 * 11 10 9 35 35 H 1.08995 * 109.46759 * 299.99782 * 11 10 9 36 36 H 0.97006 * 120.00107 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.01187 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2733 0.0006 -0.0016 6 6 5.7803 0.0026 -0.0028 7 1 6.1571 0.9132 0.4629 8 6 6.3171 -0.1227 -1.4508 9 6 7.7202 -0.7364 -1.1931 10 6 7.4638 -1.6360 0.0351 11 6 8.6523 -1.5549 0.9952 12 6 7.2618 -3.0619 -0.4089 13 1 7.3097 -3.3126 -1.4583 14 6 7.0158 -4.0463 0.5245 15 7 6.9569 -3.7409 1.8023 16 14 6.7660 -5.8138 -0.0258 17 1 7.9815 -6.2879 -0.7352 18 1 6.5201 -6.6717 1.1611 19 1 5.5987 -5.8872 -0.9407 20 8 6.2810 -1.1551 0.6843 21 6 3.5843 -1.1972 -0.0027 22 6 2.1995 -1.1987 -0.0005 23 9 1.5248 -2.3692 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5138 27 1 1.6584 2.1321 0.0049 28 1 4.1199 2.1329 -0.0001 29 1 5.6968 -0.7956 -2.0429 30 1 6.3973 0.8550 -1.9261 31 1 8.0471 -1.3297 -2.0470 32 1 8.4469 0.0417 -0.9589 33 1 8.7834 -0.5242 1.3248 34 1 8.4650 -2.1915 1.8599 35 1 9.5550 -1.8908 0.4850 36 1 6.7834 -4.4334 2.4591 37 1 4.1256 -2.1317 -0.0039 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380111435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:32 Heat of formation + Delta-G solvation = -75.827186 kcal Electronic energy + Delta-G solvation = -20371.470494 eV Core-core repulsion = 17220.755785 eV Total energy + Delta-G solvation = -3150.714709 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.48580 -39.32673 -37.86380 -33.56463 -32.32268 -31.02897 -30.15269 -29.74439 -27.03739 -25.23647 -23.89133 -22.46025 -21.45124 -20.19792 -19.37389 -17.08599 -16.48646 -16.15117 -15.36888 -15.30710 -14.84428 -14.47935 -14.00094 -13.48349 -13.33252 -13.17181 -12.92105 -12.70539 -12.52218 -12.20210 -11.87038 -11.62657 -11.31685 -11.24534 -10.96047 -10.84952 -10.70069 -10.49150 -10.40682 -10.25768 -9.91360 -9.60751 -9.14536 -8.48887 -8.46179 -8.21458 -7.85067 -5.94407 -4.11214 1.46750 1.60905 3.32189 3.37846 3.39928 3.89114 4.42826 4.59661 4.85019 4.93712 5.09014 5.30936 5.32574 5.50009 5.55418 5.61195 5.63536 5.72096 5.84263 5.98832 6.08914 6.13504 6.31560 6.36079 6.41540 6.54032 6.63015 6.63919 6.75371 6.80663 6.91956 7.01661 7.15221 7.31243 7.37145 7.78415 8.10227 8.37204 8.61004 9.03649 9.60036 11.06896 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.007380 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.604991 B = 3792.965357 C = 4819.169809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.134 4.134 3 C -0.102 4.102 4 C -0.127 4.127 5 C -0.046 4.046 6 C 0.111 3.889 7 H 0.060 0.940 8 C -0.138 4.138 9 C -0.142 4.142 10 C 0.228 3.772 11 C -0.141 4.141 12 C -0.532 4.532 13 H 0.058 0.942 14 C 0.082 3.918 15 N -0.859 5.859 16 Si 0.884 3.116 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.276 1.276 20 O -0.343 6.343 21 C -0.112 4.112 22 C 0.089 3.911 23 F -0.143 7.143 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.011 0.989 34 H 0.090 0.910 35 H 0.036 0.964 36 H 0.260 0.740 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 9.513 -3.826 12.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.135 4.135 3 C -0.120 4.120 4 C -0.145 4.145 5 C -0.046 4.046 6 C 0.052 3.948 7 H 0.078 0.922 8 C -0.175 4.175 9 C -0.180 4.180 10 C 0.190 3.810 11 C -0.198 4.198 12 C -0.570 4.570 13 H 0.076 0.924 14 C -0.123 4.123 15 N -0.495 5.495 16 Si 0.711 3.289 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 O -0.263 6.263 21 C -0.131 4.131 22 C 0.070 3.930 23 F -0.121 7.121 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.030 0.970 34 H 0.109 0.891 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.446 9.286 -3.446 12.391 hybrid contribution -0.169 -1.121 -0.437 1.215 sum -7.615 8.165 -3.882 11.820 Atomic orbital electron populations 1.20653 0.90799 1.02814 1.02246 1.19826 0.96507 0.92165 1.05036 1.20709 0.93863 0.96524 1.00910 1.20957 0.93909 0.97661 1.01991 1.19931 0.96102 0.92044 0.96547 1.21564 0.88286 0.92362 0.92621 0.92248 1.23142 0.97796 1.00142 0.96462 1.23230 0.95130 0.98686 1.00965 1.19674 0.82733 0.91881 0.86667 1.22002 0.96897 0.98262 1.02676 1.21174 1.51497 0.91250 0.93045 0.92431 1.24978 0.93977 0.98478 0.94887 1.69937 1.46421 1.32859 1.00284 0.86814 0.78788 0.85052 0.78247 1.20217 1.21202 1.20141 1.88810 1.44384 1.40780 1.52312 1.21295 0.91380 1.01268 0.99115 1.17624 0.90230 0.80684 1.04501 1.91449 1.80312 1.46329 1.94040 0.91335 0.91527 0.91415 0.85651 0.85807 0.90849 0.92017 0.91162 0.92920 0.96985 0.89087 0.94499 0.92977 0.82959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.84 36.00 0.35 -0.91 16 2 C -0.13 -2.01 5.89 -104.56 -0.62 -2.63 16 3 C -0.10 -1.38 9.70 -39.59 -0.38 -1.77 16 4 C -0.13 -1.89 9.70 -39.58 -0.38 -2.28 16 5 C -0.05 -0.84 5.05 -104.63 -0.53 -1.37 16 6 C 0.11 2.18 3.65 -26.86 -0.10 2.09 16 7 H 0.06 1.09 8.09 -51.93 -0.42 0.67 16 8 C -0.14 -2.51 6.56 -24.49 -0.16 -2.67 16 9 C -0.14 -2.87 6.08 -24.79 -0.15 -3.02 16 10 C 0.23 5.55 0.82 -91.05 -0.07 5.47 16 11 C -0.14 -3.38 8.52 37.16 0.32 -3.07 16 12 C -0.53 -14.28 8.23 -34.44 -0.28 -14.56 16 13 H 0.06 1.53 7.48 -52.48 -0.39 1.13 16 14 C 0.08 2.25 5.26 -17.82 -0.09 2.16 16 15 N -0.86 -24.43 10.92 55.43 0.61 -23.82 16 16 Si 0.88 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 O -0.34 -8.52 8.94 -35.23 -0.31 -8.84 16 21 C -0.11 -2.25 9.35 -39.51 -0.37 -2.62 16 22 C 0.09 1.61 7.24 -39.42 -0.29 1.32 16 23 F -0.14 -2.66 16.48 2.25 0.04 -2.62 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.79 7.64 -51.93 -0.40 0.40 16 26 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 27 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 28 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.07 1.40 8.05 -51.93 -0.42 0.98 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.40 7.60 -51.93 -0.39 1.00 16 32 H 0.05 0.96 7.85 -51.93 -0.41 0.56 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 2.44 6.01 -51.93 -0.31 2.13 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 37 H 0.15 3.57 7.54 -52.49 -0.40 3.17 16 LS Contribution 308.42 15.07 4.65 4.65 Total: -1.00 -29.03 308.42 -8.03 -37.07 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.23 Total: 1.24 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -2.76 Total: -23.85 kcal Atomic # 7 Polarization: -24.43 SS G_CDS: 0.61 Total: -23.82 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.31 Total: -8.84 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.03 -8.03 -37.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380111435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.760 kcal (2) G-P(sol) polarization free energy of solvation -29.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds