Wall clock time and date at job start Mon Mar 30 2020 07:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38225 * 120.01264 * 2 1 4 4 C 1.38225 * 120.02437 * 180.02562 * 3 2 1 5 5 C 1.38262 * 120.05278 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.98807 * 179.97438 * 5 4 3 7 7 H 1.08997 * 110.27400 * 27.08506 * 6 5 4 8 8 C 1.54942 * 110.30666 * 264.99850 * 6 5 4 9 9 C 1.55302 * 100.94317 * 204.63750 * 8 6 5 10 10 C 1.54384 * 102.25327 * 34.13280 * 9 8 6 11 11 C 1.53000 * 109.83471 * 219.13229 * 10 9 8 12 12 C 1.50702 * 109.83146 * 98.24469 * 10 9 8 13 13 H 1.08004 * 119.99441 * 0.02562 * 12 10 9 14 14 C 1.37870 * 120.00409 * 180.02562 * 12 10 9 15 15 N 1.31514 * 119.99712 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00329 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47069 * 60.00069 * 16 14 12 18 18 H 1.48498 * 109.46990 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47030 * 300.00062 * 16 14 12 20 20 O 1.43241 * 107.58337 * 338.64491 * 10 9 8 21 21 C 1.38180 * 120.02743 * 0.02562 * 5 4 3 22 22 C 1.38436 * 120.01479 * 180.02562 * 2 1 3 23 23 F 1.35099 * 120.02621 * 359.97438 * 22 2 1 24 24 H 1.08997 * 109.47007 * 90.00149 * 1 2 3 25 25 H 1.09004 * 109.46709 * 210.00060 * 1 2 3 26 26 H 1.08995 * 109.47259 * 329.99815 * 1 2 3 27 27 H 1.07994 * 119.98533 * 0.29822 * 3 2 1 28 28 H 1.07997 * 119.96966 * 180.02562 * 4 3 2 29 29 H 1.09000 * 111.12915 * 322.55992 * 8 6 5 30 30 H 1.09003 * 111.12702 * 86.72436 * 8 6 5 31 31 H 1.09003 * 110.85384 * 152.32514 * 9 8 6 32 32 H 1.09006 * 110.84938 * 275.94799 * 9 8 6 33 33 H 1.09004 * 109.46592 * 59.99714 * 11 10 9 34 34 H 1.08997 * 109.47150 * 179.97438 * 11 10 9 35 35 H 1.08995 * 109.46759 * 299.99782 * 11 10 9 36 36 H 0.97006 * 120.00107 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.01187 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2733 0.0006 -0.0016 6 6 5.7803 0.0026 -0.0028 7 1 6.1571 0.9132 0.4629 8 6 6.3171 -0.1227 -1.4508 9 6 7.7202 -0.7364 -1.1931 10 6 7.4638 -1.6360 0.0351 11 6 8.6523 -1.5549 0.9952 12 6 7.2618 -3.0619 -0.4089 13 1 7.3097 -3.3126 -1.4583 14 6 7.0158 -4.0463 0.5245 15 7 6.9569 -3.7409 1.8023 16 14 6.7660 -5.8138 -0.0258 17 1 7.9815 -6.2879 -0.7352 18 1 6.5201 -6.6717 1.1611 19 1 5.5987 -5.8872 -0.9407 20 8 6.2810 -1.1551 0.6843 21 6 3.5843 -1.1972 -0.0027 22 6 2.1995 -1.1987 -0.0005 23 9 1.5248 -2.3692 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5138 27 1 1.6584 2.1321 0.0049 28 1 4.1199 2.1329 -0.0001 29 1 5.6968 -0.7956 -2.0429 30 1 6.3973 0.8550 -1.9261 31 1 8.0471 -1.3297 -2.0470 32 1 8.4469 0.0417 -0.9589 33 1 8.7834 -0.5242 1.3248 34 1 8.4650 -2.1915 1.8599 35 1 9.5550 -1.8908 0.4850 36 1 6.7834 -4.4334 2.4591 37 1 4.1256 -2.1317 -0.0039 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380111435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:31 Heat of formation + Delta-G solvation = -91.118474 kcal Electronic energy + Delta-G solvation = -20372.133574 eV Core-core repulsion = 17220.755785 eV Total energy + Delta-G solvation = -3151.377789 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.89743 -40.77515 -39.35907 -35.24781 -33.91445 -32.72954 -31.49456 -31.31792 -28.38035 -27.27198 -25.38999 -23.76044 -22.84409 -21.65108 -21.15660 -18.84333 -18.03196 -17.58565 -16.76275 -16.68371 -16.53020 -16.22798 -15.63015 -15.02750 -14.68279 -14.49642 -14.27840 -14.19858 -14.00882 -13.50134 -13.22116 -13.20442 -13.15116 -12.80337 -12.56799 -12.50091 -12.28426 -12.23932 -12.03358 -11.98573 -11.56166 -11.29369 -10.95139 -10.57368 -9.87452 -9.72097 -9.35181 -8.02923 -6.24774 0.20539 0.32798 1.35947 1.38106 1.43943 2.40257 2.61329 3.11394 3.30723 3.57140 3.77712 3.90242 4.00277 4.02459 4.24542 4.26186 4.45701 4.61413 4.64686 4.77718 4.79258 4.80981 4.89886 4.94221 5.04853 5.11017 5.14410 5.21356 5.25258 5.29057 5.40248 5.42720 5.43440 5.64900 5.76901 6.03359 6.13448 6.36246 6.67150 7.15237 7.50653 8.96631 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.007380 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.604991 B = 3792.965357 C = 4819.169809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.127 4.127 3 C -0.087 4.087 4 C -0.114 4.114 5 C -0.065 4.065 6 C 0.102 3.898 7 H 0.081 0.919 8 C -0.126 4.126 9 C -0.138 4.138 10 C 0.213 3.787 11 C -0.135 4.135 12 C -0.544 4.544 13 H 0.051 0.949 14 C 0.036 3.964 15 N -0.887 5.887 16 Si 0.936 3.064 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.280 1.280 20 O -0.379 6.379 21 C -0.143 4.143 22 C 0.061 3.939 23 F -0.156 7.156 24 H 0.084 0.916 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.175 0.825 28 H 0.161 0.839 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.031 0.969 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.256 0.744 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.530 12.718 -4.813 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.128 4.128 3 C -0.104 4.104 4 C -0.132 4.132 5 C -0.066 4.066 6 C 0.043 3.957 7 H 0.099 0.901 8 C -0.164 4.164 9 C -0.175 4.175 10 C 0.175 3.825 11 C -0.192 4.192 12 C -0.582 4.582 13 H 0.069 0.931 14 C -0.166 4.166 15 N -0.524 5.524 16 Si 0.762 3.238 17 H -0.190 1.190 18 H -0.211 1.211 19 H -0.206 1.206 20 O -0.299 6.299 21 C -0.162 4.162 22 C 0.042 3.958 23 F -0.135 7.135 24 H 0.102 0.898 25 H 0.075 0.925 26 H 0.118 0.882 27 H 0.193 0.807 28 H 0.179 0.821 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.656 12.489 -4.447 15.833 hybrid contribution 0.155 -2.036 -0.137 2.047 sum -8.501 10.453 -4.584 14.232 Atomic orbital electron populations 1.20763 0.88136 1.03954 1.03591 1.20287 0.98452 0.91163 1.02859 1.21276 0.93459 0.97678 0.97999 1.21342 0.94754 0.97349 0.99762 1.19961 0.95502 0.92801 0.98299 1.21869 0.89351 0.91308 0.93131 0.90093 1.23088 0.95852 1.01695 0.95728 1.23142 0.96961 0.98600 0.98822 1.19753 0.82759 0.91598 0.88373 1.21890 0.97201 0.98644 1.01500 1.21558 1.50639 0.93362 0.92658 0.93109 1.25629 0.94133 1.01841 0.95016 1.70084 1.47879 1.33450 1.01036 0.85982 0.78763 0.81332 0.77743 1.18951 1.21102 1.20595 1.88732 1.44650 1.43064 1.53496 1.20989 0.92467 1.00152 1.02638 1.17901 0.89750 0.81705 1.06420 1.91403 1.80332 1.47369 1.94359 0.89751 0.92487 0.88221 0.80716 0.82111 0.92759 0.87744 0.91500 0.90506 0.95025 0.92432 0.93963 0.93493 0.88254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 9.84 71.23 0.70 -1.43 16 2 C -0.13 -3.47 5.89 -19.82 -0.12 -3.58 16 3 C -0.09 -1.93 9.70 22.26 0.22 -1.71 16 4 C -0.11 -2.96 9.70 22.27 0.22 -2.74 16 5 C -0.07 -2.36 5.05 -19.87 -0.10 -2.46 16 6 C 0.10 3.92 3.65 30.51 0.11 4.04 16 7 H 0.08 2.74 8.09 -2.39 -0.02 2.72 16 8 C -0.13 -4.41 6.56 32.05 0.21 -4.20 16 9 C -0.14 -5.40 6.08 31.85 0.19 -5.21 16 10 C 0.21 10.55 0.82 -11.07 -0.01 10.54 16 11 C -0.13 -6.56 8.52 71.98 0.61 -5.95 16 12 C -0.54 -30.33 8.23 25.60 0.21 -30.12 16 13 H 0.05 2.80 7.48 -2.91 -0.02 2.78 16 14 C 0.04 2.06 5.26 84.65 0.45 2.50 16 15 N -0.89 -52.98 10.92 21.44 0.23 -52.75 16 16 Si 0.94 45.27 29.54 68.60 2.03 47.30 16 17 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 19 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 20 O -0.38 -19.39 8.94 -148.98 -1.33 -20.72 16 21 C -0.14 -6.06 9.35 22.31 0.21 -5.85 16 22 C 0.06 2.26 7.24 22.38 0.16 2.42 16 23 F -0.16 -6.10 16.48 44.97 0.74 -5.36 16 24 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.25 7.64 -2.38 -0.02 1.23 16 26 H 0.10 1.36 8.09 -2.39 -0.02 1.34 16 27 H 0.18 2.27 8.06 -2.91 -0.02 2.24 16 28 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 29 H 0.05 2.08 8.05 -2.39 -0.02 2.06 16 30 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.07 2.63 7.60 -2.39 -0.02 2.61 16 32 H 0.08 2.62 7.85 -2.38 -0.02 2.60 16 33 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.06 3.19 6.01 -2.39 -0.01 3.18 16 35 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 37 H 0.10 5.17 7.54 -2.91 -0.02 5.15 16 Total: -1.00 -68.14 308.42 5.79 -62.36 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.05 Total: 12.93 kcal Atomic # 6 Polarization: -46.82 SS G_CDS: 3.06 Total: -43.76 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.23 Total: -52.75 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -1.33 Total: -20.72 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.74 Total: -5.36 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -68.14 5.79 -62.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380111435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.760 kcal (2) G-P(sol) polarization free energy of solvation -68.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds