Wall clock time and date at job start Mon Mar 30 2020 07:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38225 * 120.01160 * 2 1 4 4 C 1.38227 * 120.02267 * 179.97438 * 3 2 1 5 5 C 1.38262 * 120.05201 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.98564 * 179.97438 * 5 4 3 7 7 H 1.08994 * 110.27170 * 337.90885 * 6 5 4 8 8 C 1.54942 * 110.30497 * 100.00267 * 6 5 4 9 9 C 1.55303 * 100.94169 * 155.45946 * 8 6 5 10 10 C 1.54384 * 102.25384 * 325.86677 * 9 8 6 11 11 C 1.53006 * 109.82696 * 261.84364 * 10 9 8 12 12 C 1.50693 * 109.83504 * 140.95930 * 10 9 8 13 13 H 1.08004 * 120.00014 * 0.18633 * 12 10 9 14 14 C 1.37873 * 120.00246 * 180.18649 * 12 10 9 15 15 N 1.31514 * 119.99739 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00258 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47016 * 59.99848 * 16 14 12 18 18 H 1.48493 * 109.47116 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47156 * 300.00029 * 16 14 12 20 20 O 1.43239 * 107.58673 * 21.35226 * 10 9 8 21 21 C 1.38176 * 120.02805 * 0.27112 * 5 4 3 22 22 C 1.38441 * 120.01265 * 179.97438 * 2 1 3 23 23 F 1.35091 * 120.02592 * 0.03802 * 22 2 1 24 24 H 1.09000 * 109.47173 * 89.99657 * 1 2 3 25 25 H 1.08999 * 109.47328 * 209.99609 * 1 2 3 26 26 H 1.08995 * 109.47380 * 329.99876 * 1 2 3 27 27 H 1.07999 * 119.98643 * 359.96277 * 3 2 1 28 28 H 1.07997 * 119.97152 * 179.97438 * 4 3 2 29 29 H 1.09000 * 111.13028 * 37.54410 * 8 6 5 30 30 H 1.09002 * 111.12632 * 273.37612 * 8 6 5 31 31 H 1.09002 * 110.84888 * 207.67273 * 9 8 6 32 32 H 1.09002 * 110.85086 * 84.05706 * 9 8 6 33 33 H 1.09001 * 109.46801 * 59.99745 * 11 10 9 34 34 H 1.09001 * 109.46998 * 179.97438 * 11 10 9 35 35 H 1.09000 * 109.47050 * 299.99633 * 11 10 9 36 36 H 0.97004 * 120.00040 * 180.02562 * 15 14 12 37 37 H 1.07999 * 120.01553 * 179.72570 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2733 0.0006 0.0005 6 6 5.7803 0.0026 0.0005 7 1 6.1567 0.9505 -0.3840 8 6 6.3183 -0.2491 1.4316 9 6 7.7223 -0.8353 1.1198 10 6 7.4664 -1.6235 -0.1827 11 6 7.2617 -3.1053 0.1390 12 6 8.6371 -1.4604 -1.1174 13 1 9.4849 -0.8603 -0.8215 14 6 8.6261 -2.0773 -2.3504 15 7 7.5939 -2.8085 -2.7105 16 14 10.0776 -1.8758 -3.5088 17 1 11.3065 -2.3970 -2.8578 18 1 9.8214 -2.6335 -4.7599 19 1 10.2593 -0.4372 -3.8291 20 8 6.2823 -1.0893 -0.7863 21 6 3.5843 -1.1972 -0.0057 22 6 2.1995 -1.1988 0.0005 23 9 1.5248 -2.3692 0.0003 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6583 2.1322 -0.0006 28 1 4.1200 2.1328 0.0001 29 1 5.6996 -0.9726 1.9624 30 1 6.3972 0.6830 1.9912 31 1 8.0507 -1.5010 1.9180 32 1 8.4475 -0.0384 0.9549 33 1 6.4043 -3.2179 0.8025 34 1 7.0812 -3.6559 -0.7842 35 1 8.1535 -3.4974 0.6279 36 1 7.5863 -3.2429 -3.5779 37 1 4.1255 -2.1317 -0.0101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380111438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:33 Heat of formation + Delta-G solvation = -76.041687 kcal Electronic energy + Delta-G solvation = -20197.533971 eV Core-core repulsion = 17046.809961 eV Total energy + Delta-G solvation = -3150.724010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.60515 -39.39468 -37.90137 -33.60394 -32.33286 -31.06531 -30.26892 -29.70301 -27.05546 -25.27095 -23.91201 -22.60461 -21.55814 -20.24066 -19.37892 -16.88616 -16.45674 -16.34479 -15.46624 -15.40479 -14.99374 -14.51888 -14.14252 -13.53107 -13.34608 -13.32317 -13.06594 -12.65035 -12.22764 -12.16334 -12.00670 -11.84069 -11.41529 -11.12593 -11.05468 -10.92637 -10.78533 -10.56960 -10.43534 -10.22011 -9.96235 -9.55852 -9.11950 -8.57894 -8.46966 -8.27830 -7.85410 -5.93831 -4.10954 1.39451 1.51023 3.32183 3.37597 3.39315 3.80523 4.43056 4.50086 4.80490 4.88939 5.01809 5.24518 5.28453 5.46255 5.51539 5.56079 5.58904 5.70536 5.78390 5.87779 6.08237 6.14563 6.24782 6.29182 6.37646 6.47983 6.51983 6.55300 6.64383 6.79665 6.91606 6.97040 7.11433 7.19953 7.40178 7.79226 8.09651 8.36715 8.61499 9.03681 9.60623 11.07788 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.005458 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.657012 B = 5128.804589 C = 5333.465783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.134 4.134 3 C -0.099 4.099 4 C -0.124 4.124 5 C -0.044 4.044 6 C 0.112 3.888 7 H 0.066 0.934 8 C -0.146 4.146 9 C -0.141 4.141 10 C 0.228 3.772 11 C -0.139 4.139 12 C -0.536 4.536 13 H 0.058 0.942 14 C 0.082 3.918 15 N -0.859 5.859 16 Si 0.888 3.112 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 O -0.343 6.343 21 C -0.119 4.119 22 C 0.090 3.910 23 F -0.143 7.143 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.011 0.989 34 H 0.090 0.910 35 H 0.036 0.964 36 H 0.260 0.740 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.909 6.334 6.881 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.135 4.135 3 C -0.117 4.117 4 C -0.142 4.142 5 C -0.045 4.045 6 C 0.053 3.947 7 H 0.084 0.916 8 C -0.184 4.184 9 C -0.178 4.178 10 C 0.191 3.809 11 C -0.197 4.197 12 C -0.574 4.574 13 H 0.076 0.924 14 C -0.124 4.124 15 N -0.496 5.496 16 Si 0.715 3.285 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 O -0.262 6.262 21 C -0.137 4.137 22 C 0.071 3.929 23 F -0.121 7.121 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.030 0.970 34 H 0.109 0.891 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.101 6.072 6.543 13.480 hybrid contribution 0.797 -0.015 -0.550 0.968 sum -9.304 6.057 5.993 12.616 Atomic orbital electron populations 1.20659 0.90702 1.02767 1.02427 1.19830 0.96572 0.92130 1.04943 1.20757 0.93889 0.96621 1.00442 1.21008 0.93898 0.97824 1.01498 1.20010 0.96295 0.92076 0.96100 1.21595 0.87650 0.94143 0.91351 0.91628 1.23241 0.97968 1.00606 0.96550 1.23238 0.95176 0.99947 0.99478 1.19669 0.83666 0.89750 0.87860 1.21988 0.97004 0.99131 1.01555 1.21228 1.02142 1.32347 1.01642 0.92391 1.24997 0.95380 0.94205 0.97784 1.69937 1.28696 1.30409 1.20523 0.86753 0.83039 0.78313 0.80363 1.20237 1.21239 1.20220 1.88806 1.44001 1.45771 1.47652 1.21106 0.91437 1.00645 1.00551 1.17574 0.90101 0.80720 1.04518 1.91445 1.80345 1.46288 1.94066 0.91199 0.91535 0.91377 0.85516 0.85590 0.91458 0.91618 0.92002 0.91593 0.97010 0.89141 0.94500 0.92984 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.84 36.00 0.35 -0.83 16 2 C -0.13 -1.89 5.89 -104.55 -0.62 -2.51 16 3 C -0.10 -1.29 9.70 -39.59 -0.38 -1.68 16 4 C -0.12 -1.82 9.68 -39.58 -0.38 -2.20 16 5 C -0.04 -0.79 5.03 -104.63 -0.53 -1.32 16 6 C 0.11 2.21 3.64 -26.86 -0.10 2.12 16 7 H 0.07 1.28 8.06 -51.93 -0.42 0.86 16 8 C -0.15 -2.58 6.56 -24.49 -0.16 -2.74 16 9 C -0.14 -2.84 6.07 -24.79 -0.15 -3.00 16 10 C 0.23 5.59 0.82 -91.05 -0.07 5.52 16 11 C -0.14 -3.36 8.51 37.16 0.32 -3.04 16 12 C -0.54 -14.57 8.22 -34.45 -0.28 -14.86 16 13 H 0.06 1.54 7.52 -52.48 -0.39 1.15 16 14 C 0.08 2.26 5.26 -17.82 -0.09 2.16 16 15 N -0.86 -24.68 10.92 55.43 0.61 -24.08 16 16 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 O -0.34 -8.58 9.10 -35.23 -0.32 -8.90 16 21 C -0.12 -2.20 9.35 -39.51 -0.37 -2.57 16 22 C 0.09 1.51 7.24 -39.42 -0.29 1.22 16 23 F -0.14 -2.42 16.48 2.25 0.04 -2.38 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.72 7.64 -51.93 -0.40 0.32 16 26 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 27 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.07 1.16 8.05 -51.93 -0.42 0.75 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.16 7.82 -51.93 -0.41 0.75 16 32 H 0.07 1.32 7.66 -51.93 -0.40 0.92 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 2.44 6.02 -51.93 -0.31 2.13 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.14 2.89 7.68 -52.49 -0.40 2.49 16 LS Contribution 308.70 15.07 4.65 4.65 Total: -1.00 -29.47 308.70 -8.04 -37.51 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.24 Total: 0.80 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -2.75 Total: -23.72 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.61 Total: -24.08 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.32 Total: -8.90 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.47 -8.04 -37.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380111438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.535 kcal (2) G-P(sol) polarization free energy of solvation -29.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds