Wall clock time and date at job start Mon Mar 30 2020 07:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38225 * 120.01160 * 2 1 4 4 C 1.38227 * 120.02267 * 179.97438 * 3 2 1 5 5 C 1.38262 * 120.05201 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.98564 * 179.97438 * 5 4 3 7 7 H 1.08994 * 110.27170 * 337.90885 * 6 5 4 8 8 C 1.54942 * 110.30497 * 100.00267 * 6 5 4 9 9 C 1.55303 * 100.94169 * 155.45946 * 8 6 5 10 10 C 1.54384 * 102.25384 * 325.86677 * 9 8 6 11 11 C 1.53006 * 109.82696 * 261.84364 * 10 9 8 12 12 C 1.50693 * 109.83504 * 140.95930 * 10 9 8 13 13 H 1.08004 * 120.00014 * 0.18633 * 12 10 9 14 14 C 1.37873 * 120.00246 * 180.18649 * 12 10 9 15 15 N 1.31514 * 119.99739 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00258 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47016 * 59.99848 * 16 14 12 18 18 H 1.48493 * 109.47116 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47156 * 300.00029 * 16 14 12 20 20 O 1.43239 * 107.58673 * 21.35226 * 10 9 8 21 21 C 1.38176 * 120.02805 * 0.27112 * 5 4 3 22 22 C 1.38441 * 120.01265 * 179.97438 * 2 1 3 23 23 F 1.35091 * 120.02592 * 0.03802 * 22 2 1 24 24 H 1.09000 * 109.47173 * 89.99657 * 1 2 3 25 25 H 1.08999 * 109.47328 * 209.99609 * 1 2 3 26 26 H 1.08995 * 109.47380 * 329.99876 * 1 2 3 27 27 H 1.07999 * 119.98643 * 359.96277 * 3 2 1 28 28 H 1.07997 * 119.97152 * 179.97438 * 4 3 2 29 29 H 1.09000 * 111.13028 * 37.54410 * 8 6 5 30 30 H 1.09002 * 111.12632 * 273.37612 * 8 6 5 31 31 H 1.09002 * 110.84888 * 207.67273 * 9 8 6 32 32 H 1.09002 * 110.85086 * 84.05706 * 9 8 6 33 33 H 1.09001 * 109.46801 * 59.99745 * 11 10 9 34 34 H 1.09001 * 109.46998 * 179.97438 * 11 10 9 35 35 H 1.09000 * 109.47050 * 299.99633 * 11 10 9 36 36 H 0.97004 * 120.00040 * 180.02562 * 15 14 12 37 37 H 1.07999 * 120.01553 * 179.72570 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2733 0.0006 0.0005 6 6 5.7803 0.0026 0.0005 7 1 6.1567 0.9505 -0.3840 8 6 6.3183 -0.2491 1.4316 9 6 7.7223 -0.8353 1.1198 10 6 7.4664 -1.6235 -0.1827 11 6 7.2617 -3.1053 0.1390 12 6 8.6371 -1.4604 -1.1174 13 1 9.4849 -0.8603 -0.8215 14 6 8.6261 -2.0773 -2.3504 15 7 7.5939 -2.8085 -2.7105 16 14 10.0776 -1.8758 -3.5088 17 1 11.3065 -2.3970 -2.8578 18 1 9.8214 -2.6335 -4.7599 19 1 10.2593 -0.4372 -3.8291 20 8 6.2823 -1.0893 -0.7863 21 6 3.5843 -1.1972 -0.0057 22 6 2.1995 -1.1988 0.0005 23 9 1.5248 -2.3692 0.0003 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6583 2.1322 -0.0006 28 1 4.1200 2.1328 0.0001 29 1 5.6996 -0.9726 1.9624 30 1 6.3972 0.6830 1.9912 31 1 8.0507 -1.5010 1.9180 32 1 8.4475 -0.0384 0.9549 33 1 6.4043 -3.2179 0.8025 34 1 7.0812 -3.6559 -0.7842 35 1 8.1535 -3.4974 0.6279 36 1 7.5863 -3.2429 -3.5779 37 1 4.1255 -2.1317 -0.0101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380111438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:33 Heat of formation + Delta-G solvation = -91.400288 kcal Electronic energy + Delta-G solvation = -20198.199970 eV Core-core repulsion = 17046.809961 eV Total energy + Delta-G solvation = -3151.390009 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.89986 -40.81213 -39.37581 -35.26125 -33.89490 -32.78176 -31.53455 -31.27059 -28.37253 -27.31228 -25.39497 -23.85890 -22.92366 -21.60055 -21.21281 -18.44066 -18.20679 -17.66900 -16.78598 -16.67930 -16.61532 -16.27169 -15.66797 -15.17298 -14.60147 -14.50492 -14.28625 -14.01280 -13.92456 -13.69403 -13.29692 -13.21477 -12.97357 -12.79189 -12.62189 -12.50161 -12.36326 -12.30335 -12.12848 -11.92001 -11.56152 -11.27039 -10.95066 -10.55579 -9.89529 -9.73809 -9.37284 -8.00950 -6.25209 0.18765 0.29696 1.41960 1.42907 1.50362 2.43897 2.58482 3.12744 3.28112 3.56407 3.76599 3.85646 3.96818 3.99486 4.23079 4.26508 4.43439 4.57432 4.66902 4.71681 4.78259 4.80041 4.87977 4.93643 4.96115 5.09513 5.11417 5.14198 5.23507 5.27271 5.33648 5.41904 5.46106 5.64348 5.75115 6.00160 6.10620 6.34754 6.67773 7.13744 7.51431 8.98998 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.005458 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.657012 B = 5128.804589 C = 5333.465783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.127 4.127 3 C -0.086 4.086 4 C -0.118 4.118 5 C -0.065 4.065 6 C 0.103 3.897 7 H 0.068 0.932 8 C -0.131 4.131 9 C -0.137 4.137 10 C 0.213 3.787 11 C -0.131 4.131 12 C -0.553 4.553 13 H 0.057 0.943 14 C 0.031 3.969 15 N -0.892 5.892 16 Si 0.949 3.051 17 H -0.268 1.268 18 H -0.287 1.287 19 H -0.273 1.273 20 O -0.379 6.379 21 C -0.144 4.144 22 C 0.068 3.932 23 F -0.151 7.151 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.173 0.827 28 H 0.154 0.846 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.022 0.978 34 H 0.056 0.944 35 H 0.042 0.958 36 H 0.256 0.744 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.952 9.057 7.758 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.128 4.128 3 C -0.103 4.103 4 C -0.136 4.136 5 C -0.065 4.065 6 C 0.044 3.956 7 H 0.086 0.914 8 C -0.168 4.168 9 C -0.174 4.174 10 C 0.175 3.825 11 C -0.189 4.189 12 C -0.591 4.591 13 H 0.075 0.925 14 C -0.171 4.171 15 N -0.529 5.529 16 Si 0.774 3.226 17 H -0.193 1.193 18 H -0.213 1.213 19 H -0.198 1.198 20 O -0.299 6.299 21 C -0.163 4.163 22 C 0.049 3.951 23 F -0.130 7.130 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.190 0.810 28 H 0.172 0.828 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.139 8.801 7.435 16.025 hybrid contribution 1.047 -0.825 -0.802 1.555 sum -10.092 7.977 6.633 14.473 Atomic orbital electron populations 1.20768 0.88078 1.04191 1.03467 1.20290 0.98492 0.91234 1.02738 1.21259 0.93299 0.97877 0.97901 1.21335 0.94877 0.97447 0.99900 1.19923 0.95155 0.93091 0.98323 1.21809 0.89210 0.92577 0.91966 0.91422 1.23172 0.95838 1.02070 0.95726 1.23136 0.96865 0.99769 0.97657 1.19744 0.83124 0.90222 0.89370 1.21865 0.97630 0.99313 1.00103 1.21660 1.03150 1.31889 1.02353 0.92468 1.25758 0.97760 0.94080 0.99467 1.70115 1.30590 1.31555 1.20633 0.85781 0.80230 0.78246 0.78294 1.19270 1.21303 1.19779 1.88724 1.44117 1.47498 1.49533 1.20920 0.92470 0.99790 1.03107 1.17792 0.89649 0.81669 1.05970 1.91414 1.80282 1.47008 1.94290 0.90198 0.91908 0.88240 0.80981 0.82825 0.91473 0.88034 0.90774 0.91448 0.95852 0.92494 0.93947 0.93446 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 9.84 71.24 0.70 -1.27 16 2 C -0.13 -3.25 5.89 -19.82 -0.12 -3.36 16 3 C -0.09 -1.88 9.70 22.26 0.22 -1.66 16 4 C -0.12 -3.09 9.68 22.27 0.22 -2.88 16 5 C -0.06 -2.27 5.03 -19.87 -0.10 -2.37 16 6 C 0.10 4.05 3.64 30.51 0.11 4.16 16 7 H 0.07 2.58 8.06 -2.39 -0.02 2.56 16 8 C -0.13 -4.44 6.56 32.05 0.21 -4.23 16 9 C -0.14 -5.43 6.07 31.85 0.19 -5.24 16 10 C 0.21 10.67 0.82 -11.07 -0.01 10.67 16 11 C -0.13 -6.59 8.51 71.98 0.61 -5.98 16 12 C -0.55 -30.59 8.22 25.60 0.21 -30.38 16 13 H 0.06 3.07 7.52 -2.91 -0.02 3.05 16 14 C 0.03 1.77 5.26 84.65 0.45 2.21 16 15 N -0.89 -53.25 10.92 21.45 0.23 -53.01 16 16 Si 0.95 44.11 29.54 68.60 2.03 46.13 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 18 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 O -0.38 -19.57 9.10 -148.98 -1.36 -20.92 16 21 C -0.14 -5.52 9.35 22.31 0.21 -5.31 16 22 C 0.07 2.29 7.24 22.38 0.16 2.45 16 23 F -0.15 -5.25 16.48 44.97 0.74 -4.51 16 24 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 1.21 7.64 -2.39 -0.02 1.19 16 26 H 0.10 1.21 8.09 -2.39 -0.02 1.19 16 27 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 28 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 29 H 0.07 2.27 8.05 -2.39 -0.02 2.25 16 30 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.07 2.71 7.82 -2.39 -0.02 2.69 16 32 H 0.07 2.62 7.66 -2.39 -0.02 2.61 16 33 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 3.23 6.02 -2.39 -0.01 3.22 16 35 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.11 4.74 7.68 -2.91 -0.02 4.71 16 Total: -1.00 -66.88 308.70 5.76 -61.12 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 1.05 Total: 14.37 kcal Atomic # 6 Polarization: -46.25 SS G_CDS: 3.06 Total: -43.19 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.23 Total: -53.01 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -1.36 Total: -20.92 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.74 Total: -4.51 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -66.88 5.76 -61.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380111438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.277 kcal (2) G-P(sol) polarization free energy of solvation -66.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds