Wall clock time and date at job start Mon Mar 30 2020 06:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 119.99948 * 2 1 4 4 C 1.38219 * 120.00061 * 179.78841 * 3 2 1 5 5 C 1.38257 * 119.99270 * 0.46409 * 4 3 2 6 6 C 1.38213 * 120.00446 * 359.76729 * 5 4 3 7 7 C 1.38210 * 119.99657 * 180.27453 * 2 1 3 8 8 C 1.50693 * 120.00540 * 359.97438 * 7 2 1 9 9 C 1.53006 * 109.47016 * 275.90586 * 8 7 2 10 10 O 1.42901 * 109.46689 * 297.03011 * 9 8 7 11 11 Si 1.63096 * 113.99627 * 119.35155 * 10 9 8 12 12 C 1.86297 * 109.47467 * 59.85630 * 11 10 9 13 13 C 1.86302 * 109.46979 * 179.85881 * 11 10 9 14 14 C 1.86301 * 109.47256 * 299.85651 * 11 10 9 15 15 C 1.50704 * 109.46787 * 177.02971 * 9 8 7 16 16 N 1.27939 * 120.00055 * 16.02551 * 15 9 8 17 17 Si 1.86797 * 119.99590 * 196.02047 * 15 9 8 18 18 H 1.48503 * 109.47302 * 5.17458 * 17 15 9 19 19 H 1.48499 * 109.47078 * 125.17426 * 17 15 9 20 20 H 1.48509 * 109.47170 * 245.17255 * 17 15 9 21 21 H 1.08997 * 109.46877 * 264.09040 * 1 2 3 22 22 H 1.09002 * 109.47285 * 24.08358 * 1 2 3 23 23 H 1.08998 * 109.47552 * 144.08497 * 1 2 3 24 24 H 1.08002 * 120.00461 * 359.97438 * 3 2 1 25 25 H 1.07995 * 120.00575 * 180.25319 * 4 3 2 26 26 H 1.08007 * 119.99718 * 179.78810 * 5 4 3 27 27 H 1.07998 * 119.99721 * 179.97438 * 6 5 4 28 28 H 1.09000 * 109.46920 * 35.90265 * 8 7 2 29 29 H 1.09000 * 109.47740 * 155.90192 * 8 7 2 30 30 H 1.08999 * 109.47068 * 57.03556 * 9 8 7 31 31 H 1.08999 * 109.46991 * 55.58735 * 12 11 10 32 32 H 1.09003 * 109.47103 * 175.58988 * 12 11 10 33 33 H 1.08997 * 109.47179 * 295.58860 * 12 11 10 34 34 H 1.08998 * 109.47167 * 59.99490 * 13 11 10 35 35 H 1.09003 * 109.47208 * 179.97438 * 13 11 10 36 36 H 1.08996 * 109.47089 * 299.99384 * 13 11 10 37 37 H 1.09006 * 109.47055 * 63.47196 * 14 11 10 38 38 H 1.08992 * 109.47774 * 183.47571 * 14 11 10 39 39 H 1.09006 * 109.47096 * 303.47788 * 14 11 10 40 40 H 0.97003 * 120.00328 * 359.97438 * 16 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2716 0.0000 -0.0009 6 6 3.5806 -1.1970 -0.0057 7 6 2.1980 -1.1970 -0.0057 8 6 1.4446 -2.5020 -0.0114 9 6 1.0616 -2.8760 1.4220 10 8 2.2468 -3.0803 2.1937 11 14 2.3916 -2.0711 3.4667 12 6 0.9397 -2.3024 4.6109 13 6 3.9699 -2.4484 4.3819 14 6 2.4307 -0.3096 2.8615 15 6 0.2455 -4.1429 1.4095 16 7 0.2342 -4.8863 0.3683 17 14 -0.7492 -4.6279 2.9144 18 1 -0.6687 -3.5476 3.9302 19 1 -2.1669 -4.8361 2.5245 20 1 -0.2028 -5.8855 3.4847 21 1 -0.3633 -0.1058 1.0222 22 1 -0.3634 0.9382 -0.4194 23 1 -0.3634 -0.8323 -0.6028 24 1 1.6583 2.1327 -0.0004 25 1 4.1205 2.1326 0.0086 26 1 5.3517 -0.0001 -0.0009 27 1 4.1206 -2.1322 -0.0102 28 1 0.5418 -2.3977 -0.6132 29 1 2.0751 -3.2838 -0.4348 30 1 0.4749 -2.0703 1.8633 31 1 0.8708 -3.3503 4.9031 32 1 1.0754 -1.6856 5.4993 33 1 0.0236 -2.0068 4.0998 34 1 4.8193 -2.3131 3.7124 35 1 4.0669 -1.7737 5.2325 36 1 3.9470 -3.4790 4.7361 37 1 1.4826 -0.0698 2.3799 38 1 2.5893 0.3613 3.7057 39 1 3.2429 -0.1897 2.1445 40 1 0.7505 -4.6343 -0.4133 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380571776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:57 Heat of formation + Delta-G solvation = -37.544169 kcal Electronic energy + Delta-G solvation = -19460.909900 eV Core-core repulsion = 16784.866281 eV Total energy + Delta-G solvation = -2676.043619 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.06522 -39.01526 -35.84401 -34.22174 -32.99697 -29.67007 -29.62708 -28.62179 -28.37891 -27.81225 -25.74013 -23.03966 -21.94662 -20.78041 -18.34545 -17.92234 -17.09634 -16.45024 -16.35554 -15.84281 -15.51622 -14.86337 -14.34840 -14.18690 -14.13829 -14.05113 -13.99036 -13.75594 -13.52963 -13.36609 -13.31627 -13.15590 -13.09112 -12.93787 -12.67251 -12.56110 -12.28517 -11.85230 -11.81733 -11.66598 -11.48019 -11.31880 -10.67775 -10.51857 -10.04925 -9.59812 -9.38235 0.42150 0.50907 0.70439 1.20062 1.49051 1.54917 1.83159 1.91862 1.98133 2.04825 2.50822 2.84552 3.46700 3.72777 3.89407 3.94332 4.04931 4.07907 4.14828 4.27389 4.40944 4.54382 4.65460 4.66997 4.68429 4.68537 4.72864 4.73994 4.80790 4.82474 4.86862 4.89437 4.92448 5.16293 5.22793 5.28073 5.46755 5.56070 5.60987 5.64862 5.70179 5.74565 6.12155 6.84049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.079 4.079 3 C -0.116 4.116 4 C -0.115 4.115 5 C -0.126 4.126 6 C -0.102 4.102 7 C -0.081 4.081 8 C -0.104 4.104 9 C 0.102 3.898 10 O -0.606 6.606 11 Si 1.236 2.764 12 C -0.516 4.516 13 C -0.464 4.464 14 C -0.509 4.509 15 C -0.033 4.033 16 N -0.613 5.613 17 Si 1.009 2.991 18 H -0.206 1.206 19 H -0.247 1.247 20 H -0.242 1.242 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.710 2.453 1.082 2.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.079 4.079 3 C -0.134 4.134 4 C -0.133 4.133 5 C -0.144 4.144 6 C -0.120 4.120 7 C -0.081 4.081 8 C -0.141 4.141 9 C 0.042 3.958 10 O -0.563 6.563 11 Si 1.373 2.627 12 C -0.618 4.618 13 C -0.571 4.571 14 C -0.612 4.612 15 C -0.279 4.279 16 N -0.229 5.229 17 Si 0.822 3.178 18 H -0.128 1.128 19 H -0.171 1.171 20 H -0.165 1.165 21 H 0.090 0.910 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.138 0.862 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.142 0.858 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.527 1.121 1.354 2.328 hybrid contribution 1.164 1.397 -0.600 1.915 sum -0.363 2.518 0.754 2.653 Atomic orbital electron populations 1.20951 0.91465 1.03220 1.02477 1.19698 0.95803 0.92654 0.99762 1.20999 0.94293 0.97328 1.00751 1.21143 0.94337 0.98117 0.99723 1.21143 0.99987 0.92498 1.00762 1.21045 0.93475 0.98264 0.99209 1.19391 0.93715 0.93463 1.01492 1.21024 1.01096 0.95669 0.96332 1.21675 0.85150 0.96863 0.92106 1.85435 1.42739 1.73496 1.54671 0.77534 0.66697 0.60464 0.57963 1.27416 1.16484 1.05047 1.12845 1.26273 1.16686 1.05551 1.08564 1.27271 1.05506 1.21724 1.06680 1.31974 0.97920 0.92855 1.05198 1.69335 1.19798 1.30553 1.03175 0.84729 0.77739 0.82654 0.72704 1.12825 1.17094 1.16524 0.90969 0.91250 0.91182 0.86184 0.86197 0.86093 0.85808 0.89303 0.89655 0.90682 0.90664 0.90461 0.90566 0.90842 0.90550 0.90820 0.91154 0.91360 0.89875 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.21 9.19 36.01 0.33 0.54 16 2 C -0.08 0.00 3.58 -104.63 -0.37 -0.37 16 3 C -0.12 -0.03 9.03 -39.58 -0.36 -0.38 16 4 C -0.12 -0.04 9.40 -39.58 -0.37 -0.41 16 5 C -0.13 -0.05 8.91 -39.58 -0.35 -0.40 16 6 C -0.10 -0.05 8.34 -39.58 -0.33 -0.38 16 7 C -0.08 -0.01 3.18 -104.63 -0.33 -0.35 16 8 C -0.10 0.07 3.43 -27.88 -0.10 -0.03 16 9 C 0.10 -0.05 1.67 -27.88 -0.05 -0.10 16 10 O -0.61 -0.11 7.85 -35.23 -0.28 -0.39 16 11 Si 1.24 -1.40 11.79 -169.99 -2.00 -3.40 16 12 C -0.52 0.64 6.66 101.05 0.67 1.31 16 13 C -0.46 0.20 8.65 101.05 0.87 1.07 16 14 C -0.51 0.22 6.60 101.05 0.67 0.89 16 15 C -0.03 -0.01 5.28 -13.90 -0.07 -0.09 16 16 N -0.61 -1.00 13.36 56.23 0.75 -0.25 16 17 Si 1.01 -0.34 27.87 -169.99 -4.74 -5.08 16 18 H -0.21 0.42 3.37 56.52 0.19 0.61 16 19 H -0.25 -0.11 7.11 56.52 0.40 0.29 16 20 H -0.24 -0.21 7.11 56.52 0.40 0.19 16 21 H 0.07 -0.19 7.43 -51.93 -0.39 -0.58 16 22 H 0.07 -0.14 8.05 -51.93 -0.42 -0.56 16 23 H 0.07 -0.15 6.28 -51.93 -0.33 -0.48 16 24 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 25 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 26 H 0.12 -0.12 8.06 -52.48 -0.42 -0.54 16 27 H 0.12 -0.01 8.06 -52.49 -0.42 -0.43 16 28 H 0.09 -0.14 6.28 -51.93 -0.33 -0.47 16 29 H 0.08 -0.05 7.10 -51.93 -0.37 -0.41 16 30 H 0.08 -0.17 5.39 -51.93 -0.28 -0.45 16 31 H 0.07 -0.10 6.38 -51.93 -0.33 -0.43 16 32 H 0.08 -0.12 7.96 -51.93 -0.41 -0.54 16 33 H 0.08 -0.15 6.17 -51.93 -0.32 -0.47 16 34 H 0.07 -0.01 7.96 -51.93 -0.41 -0.42 16 35 H 0.08 -0.08 7.96 -51.93 -0.41 -0.49 16 36 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 37 H 0.07 -0.04 5.44 -51.93 -0.28 -0.32 16 38 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 39 H 0.08 0.03 3.82 -51.93 -0.20 -0.16 16 40 H 0.33 0.13 6.47 -40.82 -0.26 -0.13 16 LS Contribution 303.22 15.07 4.57 4.57 Total: 0.00 -3.26 303.22 -7.75 -11.01 By element: Atomic # 1 Polarization: -1.51 SS G_CDS: -6.27 Total: -7.78 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 0.21 Total: 1.31 kcal Atomic # 7 Polarization: -1.00 SS G_CDS: 0.75 Total: -0.25 kcal Atomic # 8 Polarization: -0.11 SS G_CDS: -0.28 Total: -0.39 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: -6.74 Total: -8.48 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -3.26 -7.75 -11.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380571776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.533 kcal (2) G-P(sol) polarization free energy of solvation -3.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds