Wall clock time and date at job start Mon Mar 30 2020 06:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 119.99948 * 2 1 4 4 C 1.38219 * 120.00061 * 179.78841 * 3 2 1 5 5 C 1.38257 * 119.99270 * 0.46409 * 4 3 2 6 6 C 1.38213 * 120.00446 * 359.76729 * 5 4 3 7 7 C 1.38210 * 119.99657 * 180.27453 * 2 1 3 8 8 C 1.50693 * 120.00540 * 359.97438 * 7 2 1 9 9 C 1.53006 * 109.47016 * 275.90586 * 8 7 2 10 10 O 1.42901 * 109.46689 * 297.03011 * 9 8 7 11 11 Si 1.63096 * 113.99627 * 119.35155 * 10 9 8 12 12 C 1.86297 * 109.47467 * 59.85630 * 11 10 9 13 13 C 1.86302 * 109.46979 * 179.85881 * 11 10 9 14 14 C 1.86301 * 109.47256 * 299.85651 * 11 10 9 15 15 C 1.50704 * 109.46787 * 177.02971 * 9 8 7 16 16 N 1.27939 * 120.00055 * 16.02551 * 15 9 8 17 17 Si 1.86797 * 119.99590 * 196.02047 * 15 9 8 18 18 H 1.48503 * 109.47302 * 5.17458 * 17 15 9 19 19 H 1.48499 * 109.47078 * 125.17426 * 17 15 9 20 20 H 1.48509 * 109.47170 * 245.17255 * 17 15 9 21 21 H 1.08997 * 109.46877 * 264.09040 * 1 2 3 22 22 H 1.09002 * 109.47285 * 24.08358 * 1 2 3 23 23 H 1.08998 * 109.47552 * 144.08497 * 1 2 3 24 24 H 1.08002 * 120.00461 * 359.97438 * 3 2 1 25 25 H 1.07995 * 120.00575 * 180.25319 * 4 3 2 26 26 H 1.08007 * 119.99718 * 179.78810 * 5 4 3 27 27 H 1.07998 * 119.99721 * 179.97438 * 6 5 4 28 28 H 1.09000 * 109.46920 * 35.90265 * 8 7 2 29 29 H 1.09000 * 109.47740 * 155.90192 * 8 7 2 30 30 H 1.08999 * 109.47068 * 57.03556 * 9 8 7 31 31 H 1.08999 * 109.46991 * 55.58735 * 12 11 10 32 32 H 1.09003 * 109.47103 * 175.58988 * 12 11 10 33 33 H 1.08997 * 109.47179 * 295.58860 * 12 11 10 34 34 H 1.08998 * 109.47167 * 59.99490 * 13 11 10 35 35 H 1.09003 * 109.47208 * 179.97438 * 13 11 10 36 36 H 1.08996 * 109.47089 * 299.99384 * 13 11 10 37 37 H 1.09006 * 109.47055 * 63.47196 * 14 11 10 38 38 H 1.08992 * 109.47774 * 183.47571 * 14 11 10 39 39 H 1.09006 * 109.47096 * 303.47788 * 14 11 10 40 40 H 0.97003 * 120.00328 * 359.97438 * 16 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2716 0.0000 -0.0009 6 6 3.5806 -1.1970 -0.0057 7 6 2.1980 -1.1970 -0.0057 8 6 1.4446 -2.5020 -0.0114 9 6 1.0616 -2.8760 1.4220 10 8 2.2468 -3.0803 2.1937 11 14 2.3916 -2.0711 3.4667 12 6 0.9397 -2.3024 4.6109 13 6 3.9699 -2.4484 4.3819 14 6 2.4307 -0.3096 2.8615 15 6 0.2455 -4.1429 1.4095 16 7 0.2342 -4.8863 0.3683 17 14 -0.7492 -4.6279 2.9144 18 1 -0.6687 -3.5476 3.9302 19 1 -2.1669 -4.8361 2.5245 20 1 -0.2028 -5.8855 3.4847 21 1 -0.3633 -0.1058 1.0222 22 1 -0.3634 0.9382 -0.4194 23 1 -0.3634 -0.8323 -0.6028 24 1 1.6583 2.1327 -0.0004 25 1 4.1205 2.1326 0.0086 26 1 5.3517 -0.0001 -0.0009 27 1 4.1206 -2.1322 -0.0102 28 1 0.5418 -2.3977 -0.6132 29 1 2.0751 -3.2838 -0.4348 30 1 0.4749 -2.0703 1.8633 31 1 0.8708 -3.3503 4.9031 32 1 1.0754 -1.6856 5.4993 33 1 0.0236 -2.0068 4.0998 34 1 4.8193 -2.3131 3.7124 35 1 4.0669 -1.7737 5.2325 36 1 3.9470 -3.4790 4.7361 37 1 1.4826 -0.0698 2.3799 38 1 2.5893 0.3613 3.7057 39 1 3.2429 -0.1897 2.1445 40 1 0.7505 -4.6343 -0.4133 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380571781.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:00 Heat of formation + Delta-G solvation = -25.983028 kcal Electronic energy + Delta-G solvation = -19460.408571 eV Core-core repulsion = 16784.866281 eV Total energy + Delta-G solvation = -2675.542291 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.01611 -38.98315 -35.85230 -34.16428 -32.94239 -29.59402 -29.56377 -28.53921 -28.31044 -27.71632 -25.71087 -23.00574 -21.91272 -20.75429 -18.28232 -17.89605 -17.06734 -16.41123 -16.30182 -15.79335 -15.46247 -14.76920 -14.25421 -14.13326 -14.07575 -13.97516 -13.93589 -13.68411 -13.46208 -13.29523 -13.23969 -13.07527 -13.02120 -12.92320 -12.60865 -12.49636 -12.23824 -11.79835 -11.75553 -11.59988 -11.50771 -11.24212 -10.61346 -10.46144 -10.02361 -9.57390 -9.34403 0.45232 0.52733 0.70523 1.21078 1.55974 1.59810 1.90642 1.94554 2.02191 2.15194 2.58244 2.87253 3.50715 3.80896 3.97340 4.00913 4.13942 4.15077 4.21105 4.32653 4.50154 4.66473 4.71364 4.75240 4.75792 4.80891 4.83315 4.83966 4.88004 4.90661 4.92994 4.95706 5.01192 5.20436 5.32098 5.36657 5.56580 5.64197 5.66088 5.67197 5.76173 5.78672 6.16661 6.84175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.083 4.083 3 C -0.126 4.126 4 C -0.125 4.125 5 C -0.137 4.137 6 C -0.113 4.113 7 C -0.084 4.084 8 C -0.103 4.103 9 C 0.097 3.903 10 O -0.619 6.619 11 Si 1.261 2.739 12 C -0.525 4.525 13 C -0.478 4.478 14 C -0.514 4.514 15 C -0.031 4.031 16 N -0.637 5.637 17 Si 1.018 2.982 18 H -0.175 1.175 19 H -0.259 1.259 20 H -0.263 1.263 21 H 0.084 0.916 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.128 0.872 27 H 0.123 0.877 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.446 3.136 1.574 3.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.083 4.083 3 C -0.144 4.144 4 C -0.143 4.143 5 C -0.154 4.154 6 C -0.131 4.131 7 C -0.084 4.084 8 C -0.141 4.141 9 C 0.038 3.962 10 O -0.577 6.577 11 Si 1.397 2.603 12 C -0.627 4.627 13 C -0.583 4.583 14 C -0.616 4.616 15 C -0.277 4.277 16 N -0.254 5.254 17 Si 0.831 3.169 18 H -0.096 1.096 19 H -0.183 1.183 20 H -0.187 1.187 21 H 0.103 0.897 22 H 0.092 0.908 23 H 0.093 0.907 24 H 0.148 0.852 25 H 0.147 0.853 26 H 0.146 0.854 27 H 0.141 0.859 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.242 1.823 1.844 3.428 hybrid contribution 1.431 1.165 -0.763 1.997 sum -0.811 2.988 1.080 3.279 Atomic orbital electron populations 1.21038 0.90279 1.03752 1.03440 1.19901 0.96759 0.92395 0.99236 1.21214 0.94421 0.97976 1.00783 1.21334 0.94712 0.98485 0.99783 1.21302 1.00536 0.92622 1.00987 1.21151 0.93942 0.98351 0.99661 1.19478 0.93610 0.93900 1.01441 1.21033 1.01345 0.95164 0.96532 1.21779 0.85150 0.96982 0.92308 1.85430 1.43096 1.73985 1.55172 0.77093 0.66185 0.59582 0.57404 1.27452 1.16689 1.05421 1.13168 1.26435 1.17317 1.05596 1.08966 1.27336 1.05310 1.22379 1.06571 1.32215 0.97592 0.92888 1.05004 1.69359 1.20786 1.31356 1.03885 0.84723 0.76550 0.82691 0.72947 1.09579 1.18332 1.18716 0.89716 0.90773 0.90673 0.85195 0.85308 0.85382 0.85902 0.88343 0.90194 0.88664 0.90452 0.89773 0.89422 0.91524 0.89983 0.91056 0.90852 0.91185 0.90779 0.84831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.57 9.19 71.24 0.65 1.23 16 2 C -0.08 0.04 3.58 -19.87 -0.07 -0.03 16 3 C -0.13 -0.04 9.03 22.27 0.20 0.16 16 4 C -0.13 -0.11 9.40 22.27 0.21 0.09 16 5 C -0.14 -0.19 8.91 22.27 0.20 0.00 16 6 C -0.11 -0.20 8.34 22.27 0.19 -0.01 16 7 C -0.08 -0.03 3.18 -19.87 -0.06 -0.10 16 8 C -0.10 0.13 3.43 29.85 0.10 0.23 16 9 C 0.10 -0.14 1.67 29.85 0.05 -0.09 16 10 O -0.62 -0.18 7.85 -148.98 -1.17 -1.35 16 11 Si 1.26 -3.40 11.79 68.60 0.81 -2.59 16 12 C -0.53 2.12 6.66 113.37 0.76 2.87 16 13 C -0.48 0.24 8.65 113.37 0.98 1.22 16 14 C -0.51 0.65 6.60 113.37 0.75 1.40 16 15 C -0.03 -0.02 5.28 88.68 0.47 0.45 16 16 N -0.64 -2.37 13.36 24.11 0.32 -2.05 16 17 Si 1.02 -1.01 27.87 68.60 1.91 0.90 16 18 H -0.17 1.03 3.37 99.48 0.34 1.37 16 19 H -0.26 -0.25 7.11 99.48 0.71 0.46 16 20 H -0.26 -0.65 7.11 99.48 0.71 0.06 16 21 H 0.08 -0.59 7.43 -2.39 -0.02 -0.61 16 22 H 0.07 -0.39 8.05 -2.39 -0.02 -0.41 16 23 H 0.07 -0.41 6.28 -2.39 -0.01 -0.42 16 24 H 0.13 -0.31 8.06 -2.91 -0.02 -0.34 16 25 H 0.13 -0.23 8.06 -2.91 -0.02 -0.25 16 26 H 0.13 -0.14 8.06 -2.91 -0.02 -0.16 16 27 H 0.12 0.13 8.06 -2.91 -0.02 0.11 16 28 H 0.10 -0.35 6.28 -2.39 -0.01 -0.36 16 29 H 0.08 -0.02 7.10 -2.39 -0.02 -0.04 16 30 H 0.10 -0.56 5.39 -2.39 -0.01 -0.57 16 31 H 0.08 -0.31 6.38 -2.39 -0.02 -0.33 16 32 H 0.08 -0.41 7.96 -2.39 -0.02 -0.43 16 33 H 0.09 -0.55 6.17 -2.39 -0.01 -0.57 16 34 H 0.07 0.05 7.96 -2.39 -0.02 0.03 16 35 H 0.08 -0.17 7.96 -2.39 -0.02 -0.18 16 36 H 0.07 -0.01 7.96 -2.39 -0.02 -0.03 16 37 H 0.07 -0.15 5.44 -2.38 -0.01 -0.16 16 38 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 39 H 0.07 0.08 3.82 -2.38 -0.01 0.07 16 40 H 0.33 0.50 6.47 -92.71 -0.60 -0.10 16 Total: 0.00 -7.77 303.22 7.11 -0.67 By element: Atomic # 1 Polarization: -3.84 SS G_CDS: 0.81 Total: -3.03 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 4.42 Total: 7.44 kcal Atomic # 7 Polarization: -2.37 SS G_CDS: 0.32 Total: -2.05 kcal Atomic # 8 Polarization: -0.18 SS G_CDS: -1.17 Total: -1.35 kcal Atomic # 14 Polarization: -4.40 SS G_CDS: 2.72 Total: -1.68 kcal Total: -7.77 7.11 -0.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380571781.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.318 kcal (2) G-P(sol) polarization free energy of solvation -7.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -0.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds