Wall clock time and date at job start Mon Mar 30 2020 06:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35749 * 116.99752 * 2 1 4 4 C 1.38924 * 119.90432 * 0.02819 * 3 2 1 5 5 C 1.37675 * 120.17553 * 179.97438 * 4 3 2 6 6 C 1.40007 * 119.97991 * 0.02562 * 5 4 3 7 7 C 1.46855 * 120.09870 * 180.02562 * 6 5 4 8 8 C 1.50700 * 120.00188 * 354.48570 * 7 6 5 9 9 O 1.21296 * 120.00126 * 174.48484 * 7 6 5 10 10 C 1.40041 * 119.80272 * 359.72921 * 6 5 4 11 11 C 1.38025 * 119.82588 * 0.50233 * 10 6 5 12 12 O 1.36003 * 119.99399 * 179.79128 * 11 10 6 13 13 C 1.42904 * 116.99642 * 359.73040 * 12 11 10 14 14 C 1.53000 * 109.47059 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.46999 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00020 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99979 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99785 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99974 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47344 * 60.00297 * 19 17 15 21 21 H 1.48499 * 109.46753 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47088 * 300.00318 * 19 17 15 23 23 H 1.08997 * 109.46636 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46864 * 299.99496 * 1 2 3 25 25 H 1.08997 * 109.47109 * 60.00017 * 1 2 3 26 26 H 1.07998 * 119.90751 * 359.97438 * 4 3 2 27 27 H 1.07997 * 120.00725 * 180.02562 * 5 4 3 28 28 H 1.08994 * 109.46916 * 5.08845 * 8 7 6 29 29 H 1.08997 * 109.47026 * 125.08458 * 8 7 6 30 30 H 1.08990 * 109.47389 * 245.08635 * 8 7 6 31 31 H 1.08005 * 120.08905 * 180.29540 * 10 6 5 32 32 H 1.08997 * 109.47092 * 59.99443 * 13 12 11 33 33 H 1.09001 * 109.46743 * 299.99402 * 13 12 11 34 34 H 1.09001 * 109.46839 * 299.99323 * 14 13 12 35 35 H 1.08997 * 109.47185 * 59.99477 * 14 13 12 36 36 H 0.97005 * 119.99768 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2866 2.3734 0.0006 5 6 1.9058 3.6030 0.0011 6 6 3.3036 3.6825 0.0005 7 6 3.9668 4.9928 0.0017 8 6 3.1480 6.2519 -0.1219 9 8 5.1736 5.0616 0.1021 10 6 4.0675 2.5088 0.0051 11 6 3.4384 1.2802 -0.0003 12 8 4.1769 0.1382 -0.0001 13 6 5.5984 0.2849 -0.0002 14 6 6.2538 -1.0976 -0.0006 15 6 7.7528 -0.9428 -0.0014 16 1 8.1939 0.0430 -0.0019 17 6 8.5612 -2.0598 -0.0013 18 7 8.0240 -3.2603 -0.0012 19 14 10.4193 -1.8680 -0.0029 20 1 10.8408 -1.1202 1.2087 21 1 11.0554 -3.2099 -0.0033 22 1 10.8388 -1.1216 -1.2162 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 0.2083 2.3133 0.0006 27 1 1.3134 4.5060 0.0020 28 1 2.0880 5.9985 -0.1104 29 1 3.3722 6.9146 0.7139 30 1 3.3915 6.7532 -1.0586 31 1 5.1461 2.5647 0.0095 32 1 5.9071 0.8336 0.8896 33 1 5.9070 0.8331 -0.8904 34 1 5.9453 -1.6462 0.8893 35 1 5.9450 -1.6458 -0.8907 36 1 8.5927 -4.0461 -0.0015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383350557.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:01 Heat of formation + Delta-G solvation = -116.022461 kcal Electronic energy + Delta-G solvation = -19228.792915 eV Core-core repulsion = 16063.962419 eV Total energy + Delta-G solvation = -3164.830496 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.74309 -40.26562 -39.60346 -37.64805 -35.51831 -32.83147 -31.97418 -31.42180 -29.94335 -28.00169 -27.05537 -24.54118 -23.94903 -22.25226 -21.06085 -19.61942 -18.68347 -17.93283 -17.67028 -17.27178 -16.84852 -16.57479 -16.42758 -15.95959 -15.86631 -15.59250 -15.21912 -14.35706 -14.25813 -14.02204 -13.77709 -13.27137 -13.20061 -12.99137 -12.95541 -12.68923 -12.67154 -12.46672 -12.00731 -11.99927 -11.70296 -11.66652 -11.47463 -10.79718 -10.64843 -9.87492 -8.93084 -8.29582 -6.43983 -0.39795 0.28032 1.37847 1.39078 1.42439 1.50544 2.18933 2.27454 2.44311 2.68336 3.04100 3.10829 3.70551 3.89051 4.02886 4.07712 4.16360 4.21114 4.27868 4.40250 4.44987 4.58717 4.64040 4.68854 4.70888 4.76919 4.96926 5.09263 5.21403 5.25834 5.33759 5.40964 5.56921 5.65825 6.01039 6.13540 6.55291 6.58822 6.69407 7.25925 8.83415 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.017451 B = 0.004829 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.068720 B = 5796.698858 C = 7368.391051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.335 6.335 3 C 0.119 3.881 4 C -0.178 4.178 5 C -0.046 4.046 6 C -0.192 4.192 7 C 0.394 3.606 8 C -0.189 4.189 9 O -0.515 6.515 10 C -0.138 4.138 11 C 0.054 3.946 12 O -0.331 6.331 13 C 0.085 3.915 14 C 0.033 3.967 15 C -0.552 4.552 16 H 0.065 0.935 17 C 0.005 3.995 18 N -0.928 5.928 19 Si 0.977 3.023 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.265 1.265 23 H 0.110 0.890 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.185 0.815 27 H 0.192 0.808 28 H 0.118 0.882 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.000 1.000 35 H 0.000 1.000 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.126 17.406 -0.396 26.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.249 6.249 3 C 0.072 3.928 4 C -0.196 4.196 5 C -0.064 4.064 6 C -0.194 4.194 7 C 0.276 3.724 8 C -0.245 4.245 9 O -0.395 6.395 10 C -0.157 4.157 11 C 0.009 3.991 12 O -0.246 6.246 13 C 0.010 3.990 14 C -0.004 4.004 15 C -0.589 4.589 16 H 0.084 0.916 17 C -0.194 4.194 18 N -0.567 5.567 19 Si 0.800 3.200 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.189 1.189 23 H 0.129 0.871 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.202 0.798 27 H 0.209 0.791 28 H 0.136 0.864 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.138 0.862 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.467 16.849 -0.345 25.748 hybrid contribution 1.273 -0.582 0.016 1.399 sum -18.194 16.267 -0.329 24.408 Atomic orbital electron populations 1.23504 0.75541 1.05786 1.03255 1.86180 1.24296 1.26506 1.87877 1.18986 0.88537 0.86878 0.98362 1.21494 1.01846 0.89750 1.06501 1.21677 0.91609 0.99186 0.93913 1.20519 0.95637 0.93697 1.09509 1.23165 0.88536 0.91535 0.69121 1.22262 1.02352 0.94070 1.05842 1.90562 1.19275 1.90324 1.39321 1.21366 1.00667 0.91350 1.02313 1.18759 0.89933 0.86328 1.04126 1.86180 1.20221 1.29296 1.88945 1.22842 0.76006 1.00272 0.99860 1.18916 0.94678 0.90711 0.96089 1.21341 0.91176 0.93640 1.52774 0.91634 1.26028 1.04956 0.94498 0.93904 1.70112 1.37816 0.98554 1.50247 0.85332 0.77622 0.77703 0.79382 1.18967 1.20198 1.18947 0.87131 0.90347 0.90296 0.79756 0.79081 0.86400 0.87808 0.87431 0.86185 0.92939 0.92883 0.98201 0.98167 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -10.13 10.26 -76.71 -0.79 -10.91 16 3 C 0.12 3.57 6.71 22.74 0.15 3.72 16 4 C -0.18 -3.26 9.01 22.30 0.20 -3.06 16 5 C -0.05 -0.75 9.43 22.57 0.21 -0.54 16 6 C -0.19 -4.96 5.87 -20.16 -0.12 -5.08 16 7 C 0.39 9.55 7.21 27.94 0.20 9.75 16 8 C -0.19 -2.08 10.19 71.24 0.73 -1.35 16 9 O -0.51 -17.84 17.10 -3.08 -0.05 -17.89 16 10 C -0.14 -4.88 8.58 22.66 0.19 -4.69 16 11 C 0.05 2.07 6.69 22.52 0.15 2.22 16 12 O -0.33 -15.69 9.92 -79.55 -0.79 -16.48 16 13 C 0.08 4.18 4.68 71.98 0.34 4.51 16 14 C 0.03 1.95 5.34 29.85 0.16 2.11 16 15 C -0.55 -33.19 9.11 25.60 0.23 -32.96 16 16 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 17 C 0.01 0.30 5.46 84.66 0.46 0.76 16 18 N -0.93 -58.33 13.29 21.45 0.28 -58.04 16 19 Si 0.98 45.51 29.54 68.60 2.03 47.53 16 20 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 23 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.08 0.84 7.65 -2.39 -0.02 0.83 16 25 H 0.08 0.84 7.65 -2.39 -0.02 0.82 16 26 H 0.19 1.64 6.27 -2.91 -0.02 1.63 16 27 H 0.19 0.96 5.93 -2.91 -0.02 0.94 16 28 H 0.12 0.42 5.61 -2.39 -0.01 0.41 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.12 4.80 5.87 -2.91 -0.02 4.78 16 32 H 0.05 2.51 7.65 -2.39 -0.02 2.49 16 33 H 0.05 2.52 7.67 -2.39 -0.02 2.50 16 34 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 Total: -1.00 -82.52 310.56 5.80 -76.73 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: 1.09 Total: 2.36 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 4.02 Total: -23.29 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.28 Total: -58.04 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -1.63 Total: -45.29 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -82.52 5.80 -76.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383350557.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.297 kcal (2) G-P(sol) polarization free energy of solvation -82.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds