Wall clock time and date at job start Mon Mar 30 2020 06:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38265 * 119.97510 * 2 1 4 4 C 1.38176 * 120.02306 * 179.76731 * 3 2 1 5 5 C 1.38487 * 119.97468 * 0.46543 * 4 3 2 6 6 F 1.35104 * 120.02441 * 179.78758 * 5 4 3 7 7 C 1.38436 * 119.94649 * 359.51568 * 5 4 3 8 8 C 1.50699 * 120.00926 * 180.27518 * 7 5 4 9 9 H 1.09002 * 110.55694 * 322.11879 * 8 7 5 10 10 C 1.54993 * 110.62139 * 84.99752 * 8 7 5 11 11 C 1.54811 * 102.09509 * 155.52303 * 10 8 7 12 12 C 1.54103 * 104.18690 * 339.12026 * 11 10 8 13 13 C 1.52998 * 109.87999 * 117.39271 * 12 11 10 14 14 C 1.50699 * 109.88047 * 238.54576 * 12 11 10 15 15 H 1.08003 * 120.00069 * 0.02562 * 14 12 11 16 16 C 1.37875 * 120.00167 * 180.02562 * 14 12 11 17 17 N 1.31508 * 119.99892 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99941 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47270 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47063 * 119.99991 * 18 16 14 21 21 H 1.48502 * 109.46962 * 239.99788 * 18 16 14 22 22 O 1.43751 * 107.29314 * 357.96988 * 12 11 10 23 23 C 1.38216 * 119.97572 * 0.24882 * 7 5 4 24 24 H 1.09008 * 109.47061 * 270.01948 * 1 2 3 25 25 H 1.09000 * 109.47071 * 30.01831 * 1 2 3 26 26 H 1.08999 * 109.47755 * 150.02095 * 1 2 3 27 27 H 1.07993 * 119.98872 * 0.02640 * 3 2 1 28 28 H 1.07999 * 120.01654 * 180.22962 * 4 3 2 29 29 H 1.08999 * 110.91065 * 273.72447 * 10 8 7 30 30 H 1.09005 * 110.90492 * 37.28649 * 10 8 7 31 31 H 1.08998 * 110.48918 * 97.79978 * 11 10 8 32 32 H 1.09007 * 110.48754 * 220.31409 * 11 10 8 33 33 H 1.09005 * 109.46762 * 59.99982 * 13 12 11 34 34 H 1.08995 * 109.47366 * 179.97438 * 13 12 11 35 35 H 1.08995 * 109.47086 * 300.00725 * 13 12 11 36 36 H 0.97002 * 119.99999 * 180.02562 * 17 16 14 37 37 H 1.08002 * 119.98614 * 180.02562 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1989 0.0049 5 6 4.2725 -0.0002 0.0000 6 9 5.6235 -0.0002 0.0004 7 6 3.5797 -1.1987 0.0004 8 6 4.3323 -2.5043 0.0014 9 1 5.2215 -2.4339 -0.6251 10 6 4.7140 -2.9133 1.4468 11 6 4.8600 -4.4494 1.3215 12 6 4.0567 -4.8030 0.0548 13 6 4.9874 -5.4037 -1.0006 14 6 2.9652 -5.7839 0.3974 15 1 2.8472 -6.1270 1.4147 16 6 2.1171 -6.2434 -0.5877 17 7 2.2603 -5.8253 -1.8263 18 14 0.7636 -7.4587 -0.1628 19 1 0.8141 -7.7683 1.2886 20 1 -0.5564 -6.8664 -0.4975 21 1 0.9575 -8.7079 -0.9420 22 8 3.4798 -3.5828 -0.4399 23 6 2.1975 -1.1974 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6572 2.1326 0.0004 28 1 4.1190 2.1345 0.0086 29 1 5.6576 -2.4558 1.7442 30 1 3.9201 -2.6533 2.1471 31 1 5.9075 -4.7242 1.1981 32 1 4.4367 -4.9454 2.1950 33 1 5.4506 -6.3074 -0.6045 34 1 4.4127 -5.6517 -1.8930 35 1 5.7618 -4.6805 -1.2560 36 1 1.6634 -6.1482 -2.5193 37 1 1.6568 -2.1324 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383381175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:50 Heat of formation + Delta-G solvation = -75.892326 kcal Electronic energy + Delta-G solvation = -20421.169662 eV Core-core repulsion = 17270.452129 eV Total energy + Delta-G solvation = -3150.717533 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.58107 -39.29473 -37.98571 -33.36705 -32.20310 -31.30458 -30.96060 -28.89940 -26.44030 -25.53027 -24.72677 -22.30747 -21.42359 -19.83752 -19.33197 -17.35694 -16.73313 -16.19107 -15.33540 -15.12241 -14.72575 -14.44341 -13.84001 -13.65502 -13.46275 -13.33866 -13.03816 -12.88919 -12.49901 -12.06116 -11.83302 -11.69612 -11.34836 -11.20948 -10.99460 -10.91898 -10.64693 -10.48853 -10.37242 -10.22208 -9.83838 -9.58274 -9.10007 -8.60348 -8.51913 -8.20283 -7.95671 -5.97703 -4.13882 1.40590 1.54007 3.27738 3.36394 3.39751 3.83584 4.40213 4.53695 4.78271 4.94755 5.08301 5.20243 5.39264 5.46061 5.59859 5.65103 5.74865 5.75422 5.80250 5.99676 6.09980 6.20781 6.30027 6.37600 6.39864 6.50162 6.59352 6.72025 6.79833 6.83528 6.88537 6.91504 7.16303 7.22097 7.29067 7.76646 8.11992 8.33652 8.54433 8.98914 9.56571 11.04251 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.020339 B = 0.007009 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.315704 B = 3993.879684 C = 4930.343760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C -0.104 4.104 4 C -0.158 4.158 5 C 0.089 3.911 6 F -0.143 7.143 7 C -0.093 4.093 8 C 0.104 3.896 9 H 0.062 0.938 10 C -0.139 4.139 11 C -0.141 4.141 12 C 0.225 3.775 13 C -0.150 4.150 14 C -0.521 4.521 15 H 0.062 0.938 16 C 0.079 3.921 17 N -0.859 5.859 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 O -0.336 6.336 23 C -0.060 4.060 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.091 0.909 35 H 0.010 0.990 36 H 0.259 0.741 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.408 11.389 3.570 11.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C -0.122 4.122 4 C -0.177 4.177 5 C 0.070 3.930 6 F -0.121 7.121 7 C -0.094 4.094 8 C 0.045 3.955 9 H 0.080 0.920 10 C -0.177 4.177 11 C -0.178 4.178 12 C 0.188 3.812 13 C -0.208 4.208 14 C -0.559 4.559 15 H 0.080 0.920 16 C -0.126 4.126 17 N -0.496 5.496 18 Si 0.716 3.284 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.210 1.210 22 O -0.255 6.255 23 C -0.078 4.078 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.110 0.890 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.198 11.372 3.256 11.830 hybrid contribution -0.180 -0.577 0.250 0.654 sum 0.019 10.795 3.505 11.350 Atomic orbital electron populations 1.20756 0.90975 1.02841 1.02219 1.20014 0.96456 0.92944 1.00876 1.20771 0.92957 0.97720 1.00773 1.20941 0.94954 0.96440 1.05337 1.17513 0.76642 0.94033 1.04853 1.91451 1.29206 1.97412 1.94077 1.19971 0.94834 0.93463 1.01115 1.21601 0.92707 0.86821 0.94390 0.92011 1.23038 1.00591 0.97272 0.96794 1.23079 0.99822 0.93676 1.01255 1.19681 0.91203 0.82955 0.87347 1.22173 0.97491 0.97768 1.03335 1.21104 1.15717 1.24200 0.94834 0.91971 1.25030 0.97059 0.95513 0.94986 1.69968 1.36921 1.42210 1.00458 0.86616 0.82141 0.81040 0.78637 1.19722 1.20901 1.20957 1.89268 1.46764 1.13816 1.75658 1.21059 0.92769 0.98665 0.95338 0.91296 0.91854 0.91049 0.85678 0.85284 0.92096 0.91398 0.92808 0.91441 0.94579 0.89040 0.97102 0.93071 0.83432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.01 36.00 0.36 -0.98 16 2 C -0.10 -1.53 5.88 -104.62 -0.62 -2.14 16 3 C -0.10 -1.37 9.70 -39.59 -0.38 -1.75 16 4 C -0.16 -2.22 10.03 -39.51 -0.40 -2.61 16 5 C 0.09 1.50 7.25 -39.42 -0.29 1.22 16 6 F -0.14 -2.44 16.65 2.25 0.04 -2.40 16 7 C -0.09 -1.76 5.14 -104.56 -0.54 -2.30 16 8 C 0.10 2.19 3.24 -26.83 -0.09 2.10 16 9 H 0.06 1.32 7.91 -51.93 -0.41 0.91 16 10 C -0.14 -2.69 6.58 -24.72 -0.16 -2.85 16 11 C -0.14 -2.97 6.26 -25.20 -0.16 -3.13 16 12 C 0.23 5.63 0.74 -91.20 -0.07 5.56 16 13 C -0.15 -3.68 8.39 37.16 0.31 -3.37 16 14 C -0.52 -14.13 8.26 -34.44 -0.28 -14.41 16 15 H 0.06 1.66 7.34 -52.48 -0.39 1.28 16 16 C 0.08 2.16 5.26 -17.82 -0.09 2.07 16 17 N -0.86 -24.28 10.93 55.43 0.61 -23.67 16 18 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 O -0.34 -8.49 8.87 -35.23 -0.31 -8.80 16 23 C -0.06 -1.10 9.04 -39.59 -0.36 -1.46 16 24 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 25 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 26 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 27 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.29 8.05 -51.93 -0.42 0.87 16 31 H 0.05 1.05 7.70 -51.93 -0.40 0.65 16 32 H 0.07 1.41 7.41 -51.92 -0.38 1.02 16 33 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 2.48 6.00 -51.93 -0.31 2.17 16 35 H 0.01 0.23 8.12 -51.93 -0.42 -0.19 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 37 H 0.15 3.02 7.27 -52.49 -0.38 2.63 16 LS Contribution 307.89 15.07 4.64 4.64 Total: -1.00 -28.91 307.89 -8.01 -36.92 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.20 Total: 1.56 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -2.76 Total: -24.06 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.61 Total: -23.67 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.31 Total: -8.80 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.91 -8.01 -36.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383381175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.976 kcal (2) G-P(sol) polarization free energy of solvation -28.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds