Wall clock time and date at job start Mon Mar 30 2020 06:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38265 * 119.97510 * 2 1 4 4 C 1.38176 * 120.02306 * 179.76731 * 3 2 1 5 5 C 1.38487 * 119.97468 * 0.46543 * 4 3 2 6 6 F 1.35104 * 120.02441 * 179.78758 * 5 4 3 7 7 C 1.38436 * 119.94649 * 359.51568 * 5 4 3 8 8 C 1.50699 * 120.00926 * 180.27518 * 7 5 4 9 9 H 1.09002 * 110.55694 * 322.11879 * 8 7 5 10 10 C 1.54993 * 110.62139 * 84.99752 * 8 7 5 11 11 C 1.54811 * 102.09509 * 155.52303 * 10 8 7 12 12 C 1.54103 * 104.18690 * 339.12026 * 11 10 8 13 13 C 1.52998 * 109.87999 * 117.39271 * 12 11 10 14 14 C 1.50699 * 109.88047 * 238.54576 * 12 11 10 15 15 H 1.08003 * 120.00069 * 0.02562 * 14 12 11 16 16 C 1.37875 * 120.00167 * 180.02562 * 14 12 11 17 17 N 1.31508 * 119.99892 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99941 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47270 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47063 * 119.99991 * 18 16 14 21 21 H 1.48502 * 109.46962 * 239.99788 * 18 16 14 22 22 O 1.43751 * 107.29314 * 357.96988 * 12 11 10 23 23 C 1.38216 * 119.97572 * 0.24882 * 7 5 4 24 24 H 1.09008 * 109.47061 * 270.01948 * 1 2 3 25 25 H 1.09000 * 109.47071 * 30.01831 * 1 2 3 26 26 H 1.08999 * 109.47755 * 150.02095 * 1 2 3 27 27 H 1.07993 * 119.98872 * 0.02640 * 3 2 1 28 28 H 1.07999 * 120.01654 * 180.22962 * 4 3 2 29 29 H 1.08999 * 110.91065 * 273.72447 * 10 8 7 30 30 H 1.09005 * 110.90492 * 37.28649 * 10 8 7 31 31 H 1.08998 * 110.48918 * 97.79978 * 11 10 8 32 32 H 1.09007 * 110.48754 * 220.31409 * 11 10 8 33 33 H 1.09005 * 109.46762 * 59.99982 * 13 12 11 34 34 H 1.08995 * 109.47366 * 179.97438 * 13 12 11 35 35 H 1.08995 * 109.47086 * 300.00725 * 13 12 11 36 36 H 0.97002 * 119.99999 * 180.02562 * 17 16 14 37 37 H 1.08002 * 119.98614 * 180.02562 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1989 0.0049 5 6 4.2725 -0.0002 0.0000 6 9 5.6235 -0.0002 0.0004 7 6 3.5797 -1.1987 0.0004 8 6 4.3323 -2.5043 0.0014 9 1 5.2215 -2.4339 -0.6251 10 6 4.7140 -2.9133 1.4468 11 6 4.8600 -4.4494 1.3215 12 6 4.0567 -4.8030 0.0548 13 6 4.9874 -5.4037 -1.0006 14 6 2.9652 -5.7839 0.3974 15 1 2.8472 -6.1270 1.4147 16 6 2.1171 -6.2434 -0.5877 17 7 2.2603 -5.8253 -1.8263 18 14 0.7636 -7.4587 -0.1628 19 1 0.8141 -7.7683 1.2886 20 1 -0.5564 -6.8664 -0.4975 21 1 0.9575 -8.7079 -0.9420 22 8 3.4798 -3.5828 -0.4399 23 6 2.1975 -1.1974 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6572 2.1326 0.0004 28 1 4.1190 2.1345 0.0086 29 1 5.6576 -2.4558 1.7442 30 1 3.9201 -2.6533 2.1471 31 1 5.9075 -4.7242 1.1981 32 1 4.4367 -4.9454 2.1950 33 1 5.4506 -6.3074 -0.6045 34 1 4.4127 -5.6517 -1.8930 35 1 5.7618 -4.6805 -1.2560 36 1 1.6634 -6.1482 -2.5193 37 1 1.6568 -2.1324 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383381175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:50 Heat of formation + Delta-G solvation = -90.579776 kcal Electronic energy + Delta-G solvation = -20421.806558 eV Core-core repulsion = 17270.452129 eV Total energy + Delta-G solvation = -3151.354429 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.86748 -40.76230 -39.51082 -35.20270 -33.58132 -32.83656 -32.60714 -30.59626 -27.67506 -27.38418 -26.42854 -23.71993 -22.80331 -21.32681 -21.15818 -18.90043 -18.33382 -17.63359 -16.81231 -16.63339 -16.26042 -16.16498 -15.38967 -15.03100 -14.90048 -14.62917 -14.40574 -14.36794 -14.20524 -13.76661 -13.23750 -13.04694 -12.87469 -12.82868 -12.61210 -12.45873 -12.34642 -12.26104 -11.99641 -11.90481 -11.61465 -11.33408 -10.98791 -10.60766 -10.04603 -9.74878 -9.35685 -8.04265 -6.27540 0.17864 0.31537 1.40095 1.42316 1.53229 2.42608 2.60883 3.03473 3.32858 3.48423 3.71523 3.89056 3.97634 4.04662 4.13806 4.29418 4.34079 4.49605 4.60444 4.71277 4.80556 4.85540 4.85981 4.96450 4.97686 5.01869 5.07164 5.16588 5.18257 5.24903 5.33278 5.36920 5.52098 5.64535 5.66939 6.01116 6.09377 6.32915 6.58369 7.02065 7.46832 8.97042 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.020339 B = 0.007009 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.315704 B = 3993.879684 C = 4930.343760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C -0.090 4.090 4 C -0.144 4.144 5 C 0.073 3.927 6 F -0.147 7.147 7 C -0.118 4.118 8 C 0.100 3.900 9 H 0.051 0.949 10 C -0.127 4.127 11 C -0.137 4.137 12 C 0.210 3.790 13 C -0.143 4.143 14 C -0.540 4.540 15 H 0.058 0.942 16 C 0.032 3.968 17 N -0.889 5.889 18 Si 0.951 3.049 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.278 1.278 22 O -0.365 6.365 23 C -0.087 4.087 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.054 0.946 27 H 0.171 0.829 28 H 0.165 0.835 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.022 0.978 36 H 0.258 0.742 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.081 13.729 4.542 14.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.100 4.100 3 C -0.107 4.107 4 C -0.163 4.163 5 C 0.054 3.946 6 F -0.126 7.126 7 C -0.119 4.119 8 C 0.041 3.959 9 H 0.069 0.931 10 C -0.165 4.165 11 C -0.174 4.174 12 C 0.172 3.828 13 C -0.201 4.201 14 C -0.578 4.578 15 H 0.077 0.923 16 C -0.170 4.170 17 N -0.526 5.526 18 Si 0.776 3.224 19 H -0.190 1.190 20 H -0.208 1.208 21 H -0.204 1.204 22 O -0.285 6.285 23 C -0.106 4.106 24 H 0.101 0.899 25 H 0.112 0.888 26 H 0.073 0.927 27 H 0.189 0.811 28 H 0.182 0.818 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.282 13.711 4.239 14.354 hybrid contribution -0.025 -1.219 -0.071 1.222 sum -0.307 12.491 4.168 13.172 Atomic orbital electron populations 1.20823 0.88998 1.03533 1.03339 1.20331 0.97965 0.92334 0.99381 1.21259 0.92744 0.98575 0.98128 1.21379 0.95497 0.96491 1.02895 1.17678 0.76579 0.94370 1.05956 1.91434 1.29498 1.97446 1.94242 1.19871 0.95183 0.93225 1.03617 1.21683 0.92206 0.87093 0.94914 0.93080 1.22965 1.01754 0.95940 0.95835 1.22992 1.00078 0.95015 0.99354 1.19790 0.91133 0.82930 0.88905 1.22058 0.97423 0.98380 1.02190 1.21443 1.16594 1.25028 0.94712 0.92343 1.25760 0.99186 0.97196 0.94850 1.70114 1.37779 1.43451 1.01272 0.85633 0.79220 0.78884 0.78614 1.19040 1.20802 1.20394 1.89203 1.48081 1.14930 1.76285 1.20864 0.92710 0.98825 0.98158 0.89874 0.88808 0.92708 0.81116 0.81763 0.89560 0.91476 0.91190 0.91536 0.93888 0.92023 0.95861 0.93229 0.87110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.41 10.01 71.23 0.71 -1.70 16 2 C -0.10 -2.79 5.88 -19.86 -0.12 -2.90 16 3 C -0.09 -1.98 9.70 22.26 0.22 -1.76 16 4 C -0.14 -3.52 10.03 22.31 0.22 -3.30 16 5 C 0.07 2.38 7.25 22.38 0.16 2.54 16 6 F -0.15 -4.86 16.65 44.97 0.75 -4.11 16 7 C -0.12 -4.53 5.14 -19.82 -0.10 -4.63 16 8 C 0.10 4.31 3.24 30.53 0.10 4.41 16 9 H 0.05 2.26 7.91 -2.39 -0.02 2.24 16 10 C -0.13 -4.91 6.58 31.89 0.21 -4.70 16 11 C -0.14 -5.80 6.26 31.59 0.20 -5.60 16 12 C 0.21 10.78 0.74 -11.17 -0.01 10.77 16 13 C -0.14 -7.20 8.39 71.98 0.60 -6.60 16 14 C -0.54 -30.10 8.26 25.60 0.21 -29.89 16 15 H 0.06 3.19 7.34 -2.91 -0.02 3.17 16 16 C 0.03 1.81 5.26 84.65 0.45 2.26 16 17 N -0.89 -52.10 10.93 21.45 0.23 -51.87 16 18 Si 0.95 43.70 29.54 68.60 2.03 45.73 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 O -0.37 -19.31 8.87 -148.98 -1.32 -20.63 16 23 C -0.09 -3.26 9.04 22.26 0.20 -3.06 16 24 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 25 H 0.09 1.48 8.09 -2.39 -0.02 1.46 16 26 H 0.05 1.37 8.08 -2.39 -0.02 1.35 16 27 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 28 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.07 2.57 8.05 -2.38 -0.02 2.55 16 31 H 0.07 2.69 7.70 -2.39 -0.02 2.67 16 32 H 0.07 2.79 7.41 -2.38 -0.02 2.77 16 33 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.06 3.48 6.00 -2.39 -0.01 3.47 16 35 H 0.02 1.05 8.12 -2.39 -0.02 1.03 16 36 H 0.26 14.41 8.31 -92.71 -0.77 13.63 16 37 H 0.11 4.89 7.27 -2.91 -0.02 4.86 16 Total: -1.00 -65.10 307.89 5.80 -59.30 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 1.06 Total: 15.75 kcal Atomic # 6 Polarization: -47.22 SS G_CDS: 3.06 Total: -44.17 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 0.23 Total: -51.87 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -1.32 Total: -20.63 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.75 Total: -4.11 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -65.10 5.80 -59.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383381175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.284 kcal (2) G-P(sol) polarization free energy of solvation -65.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds