Wall clock time and date at job start Mon Mar 30 2020 06:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38229 * 119.98509 * 2 1 4 4 C 1.38429 * 119.97460 * 180.02562 * 3 2 1 5 5 F 1.35095 * 120.02755 * 180.02562 * 4 3 2 6 6 C 1.38486 * 119.94830 * 359.97438 * 4 3 2 7 7 C 1.38173 * 119.97620 * 359.70401 * 6 4 3 8 8 C 1.38223 * 119.99056 * 179.97438 * 2 1 3 9 9 C 1.50699 * 119.97219 * 0.02562 * 8 2 1 10 10 H 1.08995 * 110.55601 * 326.42638 * 9 8 2 11 11 C 1.55001 * 110.61489 * 89.47820 * 9 8 2 12 12 C 1.54815 * 102.08890 * 155.52405 * 11 9 8 13 13 C 1.54092 * 104.18935 * 339.11312 * 12 11 9 14 14 C 1.53005 * 110.00378 * 117.46448 * 13 12 11 15 15 C 1.50694 * 109.88372 * 238.55038 * 13 12 11 16 16 H 1.08006 * 119.99992 * 352.86860 * 15 13 12 17 17 C 1.37881 * 120.00457 * 172.87730 * 15 13 12 18 18 N 1.31514 * 120.00209 * 165.30549 * 17 15 13 19 19 Si 1.86797 * 119.99610 * 345.29938 * 17 15 13 20 20 H 1.48503 * 109.47287 * 180.02562 * 19 17 15 21 21 H 1.48501 * 109.47361 * 60.00537 * 19 17 15 22 22 H 1.48501 * 109.47241 * 300.00147 * 19 17 15 23 23 O 1.43746 * 107.29402 * 357.97341 * 13 12 11 24 24 H 1.08999 * 109.47714 * 270.02340 * 1 2 3 25 25 H 1.08996 * 109.47703 * 30.02509 * 1 2 3 26 26 H 1.09011 * 109.46848 * 150.02747 * 1 2 3 27 27 H 1.07995 * 120.01176 * 359.97311 * 3 2 1 28 28 H 1.08004 * 120.00911 * 180.02562 * 6 4 3 29 29 H 1.07997 * 119.99072 * 180.29726 * 7 6 4 30 30 H 1.09005 * 110.90445 * 273.71999 * 11 9 8 31 31 H 1.08997 * 110.90993 * 37.28627 * 11 9 8 32 32 H 1.09000 * 110.48075 * 220.43740 * 12 11 9 33 33 H 1.09000 * 110.48702 * 97.79596 * 12 11 9 34 34 H 1.08993 * 109.47261 * 174.80064 * 14 13 12 35 35 H 1.09004 * 109.47449 * 294.80482 * 14 13 12 36 36 H 1.09001 * 109.46622 * 54.79954 * 14 13 12 37 37 H 0.96997 * 119.99753 * 354.88344 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1973 0.0000 4 6 3.5821 1.1970 -0.0005 5 9 4.2583 2.3665 0.0000 6 6 4.2732 -0.0031 -0.0005 7 6 3.5806 -1.1986 0.0062 8 6 2.1979 -1.1972 0.0005 9 6 1.4435 -2.5018 0.0005 10 1 0.5156 -2.4073 0.5645 11 6 1.1595 -2.9679 -1.4502 12 6 1.0011 -4.4978 -1.2740 13 6 1.7159 -4.8007 0.0571 14 6 0.7172 -5.3609 1.0719 15 6 2.8255 -5.7944 -0.1716 16 1 2.9385 -6.2651 -1.1371 17 6 3.6965 -6.1030 0.8518 18 7 4.4722 -7.1609 0.7586 19 14 3.7749 -5.0181 2.3704 20 1 4.7834 -5.5614 3.3154 21 1 2.4438 -4.9906 3.0283 22 1 4.1601 -3.6396 1.9747 23 8 2.2614 -3.5619 0.5408 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8903 -0.5135 27 1 1.6578 2.1325 -0.0004 28 1 5.3532 -0.0044 -0.0005 29 1 4.1193 -2.1346 0.0110 30 1 0.2393 -2.5226 -1.8287 31 1 1.9995 -2.7360 -2.1048 32 1 1.4831 -5.0282 -2.0952 33 1 -0.0531 -4.7675 -1.2110 34 1 1.2468 -5.6579 1.9770 35 1 -0.0198 -4.5959 1.3167 36 1 0.2129 -6.2277 0.6448 37 1 4.3798 -7.7652 0.0055 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383402082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:57 Heat of formation + Delta-G solvation = -75.796629 kcal Electronic energy + Delta-G solvation = -20484.651355 eV Core-core repulsion = 17333.937971 eV Total energy + Delta-G solvation = -3150.713384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.78583 -39.79272 -38.15022 -33.31154 -32.75823 -31.40263 -31.30244 -29.25105 -27.09304 -25.55009 -24.26869 -22.34422 -21.63120 -20.29216 -19.30294 -17.65893 -17.08961 -16.52322 -15.82009 -15.50357 -15.17840 -14.26766 -13.87727 -13.78073 -13.57046 -13.35720 -13.16380 -12.97905 -12.89064 -12.54223 -12.26256 -11.94102 -11.83132 -11.43244 -11.09150 -10.96683 -10.78860 -10.55714 -10.25247 -10.09861 -9.94320 -9.32173 -9.17314 -8.76487 -8.46707 -8.36223 -8.17875 -6.45845 -4.20105 1.26848 1.39298 3.55346 3.57874 3.69304 3.84795 4.34518 4.57065 4.64341 4.88046 4.92976 5.10907 5.22793 5.29116 5.37714 5.47696 5.52335 5.58028 5.61616 5.78244 5.91374 5.95412 6.10772 6.17475 6.22576 6.27854 6.31827 6.44541 6.50601 6.56319 6.61166 6.64517 6.84195 6.89986 7.08017 7.32742 7.95344 8.14000 8.32417 8.86000 9.54873 10.90490 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.022687 B = 0.007064 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.881195 B = 3962.994620 C = 4640.030807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.056 4.056 3 C -0.161 4.161 4 C 0.090 3.910 5 F -0.146 7.146 6 C -0.162 4.162 7 C -0.058 4.058 8 C -0.081 4.081 9 C 0.109 3.891 10 H 0.068 0.932 11 C -0.138 4.138 12 C -0.130 4.130 13 C 0.193 3.807 14 C -0.159 4.159 15 C -0.592 4.592 16 H 0.063 0.937 17 C 0.044 3.956 18 N -0.901 5.901 19 Si 1.064 2.936 20 H -0.304 1.304 21 H -0.279 1.279 22 H -0.270 1.270 23 O -0.366 6.366 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.148 0.852 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.026 0.974 36 H 0.052 0.948 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.582 14.172 -2.003 16.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.057 4.057 3 C -0.180 4.180 4 C 0.071 3.929 5 F -0.125 7.125 6 C -0.181 4.181 7 C -0.076 4.076 8 C -0.081 4.081 9 C 0.051 3.949 10 H 0.086 0.914 11 C -0.176 4.176 12 C -0.168 4.168 13 C 0.155 3.845 14 C -0.217 4.217 15 C -0.629 4.629 16 H 0.081 0.919 17 C -0.163 4.163 18 N -0.534 5.534 19 Si 0.895 3.105 20 H -0.233 1.233 21 H -0.206 1.206 22 H -0.196 1.196 23 O -0.287 6.287 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.166 0.834 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.581 14.432 -0.464 15.868 hybrid contribution -0.796 -0.029 -1.667 1.847 sum -7.376 14.403 -2.131 16.321 Atomic orbital electron populations 1.20864 0.90761 1.03081 1.02727 1.19485 0.96176 0.91469 0.98544 1.20824 0.92109 0.98765 1.06270 1.17684 0.90148 0.81116 1.03940 1.91460 1.80431 1.46460 1.94153 1.21189 1.00869 0.91190 1.04817 1.21172 0.93863 0.98244 0.94300 1.19804 0.94086 0.93887 1.00361 1.21749 0.92954 0.86401 0.93761 0.91395 1.23049 1.01190 0.96806 0.96557 1.22914 0.99593 0.94045 1.00247 1.20176 0.93116 0.82684 0.88476 1.22525 0.98506 0.99384 1.01263 1.21942 1.16572 1.24114 1.00277 0.91929 1.25912 0.92035 0.96457 1.01897 1.70894 1.39215 1.11259 1.32012 0.83791 0.75664 0.76229 0.74789 1.23284 1.20603 1.19621 1.88964 1.52614 1.15112 1.72048 0.90765 0.91433 0.90786 0.85157 0.84926 0.83394 0.91717 0.91010 0.91164 0.92654 0.91988 0.95512 0.92919 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 9.23 36.00 0.33 -0.92 16 2 C -0.06 -0.78 5.88 -104.63 -0.62 -1.39 16 3 C -0.16 -2.13 9.68 -39.51 -0.38 -2.51 16 4 C 0.09 1.31 7.30 -39.42 -0.29 1.02 16 5 F -0.15 -2.10 17.27 2.25 0.04 -2.06 16 6 C -0.16 -2.47 10.03 -39.51 -0.40 -2.86 16 7 C -0.06 -1.00 9.38 -39.59 -0.37 -1.37 16 8 C -0.08 -1.34 5.12 -104.62 -0.54 -1.87 16 9 C 0.11 1.93 2.65 -26.83 -0.07 1.86 16 10 H 0.07 1.11 6.88 -51.93 -0.36 0.75 16 11 C -0.14 -2.29 6.42 -24.72 -0.16 -2.45 16 12 C -0.13 -2.50 6.27 -25.20 -0.16 -2.65 16 13 C 0.19 4.41 0.70 -91.20 -0.06 4.34 16 14 C -0.16 -3.41 8.30 37.16 0.31 -3.10 16 15 C -0.59 -16.22 8.65 -34.44 -0.30 -16.52 16 16 H 0.06 1.83 7.61 -52.48 -0.40 1.43 16 17 C 0.04 1.25 5.34 -17.82 -0.10 1.15 16 18 N -0.90 -27.44 13.70 55.43 0.76 -26.69 16 19 Si 1.06 26.78 24.83 -169.99 -4.22 22.56 16 20 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 21 H -0.28 -6.61 5.61 56.52 0.32 -6.30 16 22 H -0.27 -6.56 6.75 56.52 0.38 -6.18 16 23 O -0.37 -8.16 5.74 -35.23 -0.20 -8.36 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 26 H 0.07 0.78 5.96 -51.92 -0.31 0.47 16 27 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.13 1.79 8.06 -52.48 -0.42 1.36 16 29 H 0.15 2.86 7.36 -52.49 -0.39 2.47 16 30 H 0.06 0.88 7.46 -51.93 -0.39 0.49 16 31 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 32 H 0.07 1.41 7.41 -51.93 -0.39 1.03 16 33 H 0.05 0.94 7.70 -51.93 -0.40 0.54 16 34 H 0.06 1.43 4.68 -51.93 -0.24 1.19 16 35 H 0.03 0.49 8.01 -51.93 -0.42 0.08 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.27 8.04 8.73 -40.82 -0.36 7.68 16 LS Contribution 296.28 15.07 4.46 4.46 Total: -1.00 -29.82 296.28 -7.02 -36.84 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.07 Total: 0.52 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -2.79 Total: -27.27 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.76 Total: -26.69 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.20 Total: -8.36 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 26.78 SS G_CDS: -4.22 Total: 22.56 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.82 -7.02 -36.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383402082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.956 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds