Wall clock time and date at job start Mon Mar 30 2020 06:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38229 * 119.98509 * 2 1 4 4 C 1.38429 * 119.97460 * 180.02562 * 3 2 1 5 5 F 1.35095 * 120.02755 * 180.02562 * 4 3 2 6 6 C 1.38486 * 119.94830 * 359.97438 * 4 3 2 7 7 C 1.38173 * 119.97620 * 359.70401 * 6 4 3 8 8 C 1.38223 * 119.99056 * 179.97438 * 2 1 3 9 9 C 1.50699 * 119.97219 * 0.02562 * 8 2 1 10 10 H 1.08995 * 110.55601 * 326.42638 * 9 8 2 11 11 C 1.55001 * 110.61489 * 89.47820 * 9 8 2 12 12 C 1.54815 * 102.08890 * 155.52405 * 11 9 8 13 13 C 1.54092 * 104.18935 * 339.11312 * 12 11 9 14 14 C 1.53005 * 110.00378 * 117.46448 * 13 12 11 15 15 C 1.50694 * 109.88372 * 238.55038 * 13 12 11 16 16 H 1.08006 * 119.99992 * 352.86860 * 15 13 12 17 17 C 1.37881 * 120.00457 * 172.87730 * 15 13 12 18 18 N 1.31514 * 120.00209 * 165.30549 * 17 15 13 19 19 Si 1.86797 * 119.99610 * 345.29938 * 17 15 13 20 20 H 1.48503 * 109.47287 * 180.02562 * 19 17 15 21 21 H 1.48501 * 109.47361 * 60.00537 * 19 17 15 22 22 H 1.48501 * 109.47241 * 300.00147 * 19 17 15 23 23 O 1.43746 * 107.29402 * 357.97341 * 13 12 11 24 24 H 1.08999 * 109.47714 * 270.02340 * 1 2 3 25 25 H 1.08996 * 109.47703 * 30.02509 * 1 2 3 26 26 H 1.09011 * 109.46848 * 150.02747 * 1 2 3 27 27 H 1.07995 * 120.01176 * 359.97311 * 3 2 1 28 28 H 1.08004 * 120.00911 * 180.02562 * 6 4 3 29 29 H 1.07997 * 119.99072 * 180.29726 * 7 6 4 30 30 H 1.09005 * 110.90445 * 273.71999 * 11 9 8 31 31 H 1.08997 * 110.90993 * 37.28627 * 11 9 8 32 32 H 1.09000 * 110.48075 * 220.43740 * 12 11 9 33 33 H 1.09000 * 110.48702 * 97.79596 * 12 11 9 34 34 H 1.08993 * 109.47261 * 174.80064 * 14 13 12 35 35 H 1.09004 * 109.47449 * 294.80482 * 14 13 12 36 36 H 1.09001 * 109.46622 * 54.79954 * 14 13 12 37 37 H 0.96997 * 119.99753 * 354.88344 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1973 0.0000 4 6 3.5821 1.1970 -0.0005 5 9 4.2583 2.3665 0.0000 6 6 4.2732 -0.0031 -0.0005 7 6 3.5806 -1.1986 0.0062 8 6 2.1979 -1.1972 0.0005 9 6 1.4435 -2.5018 0.0005 10 1 0.5156 -2.4073 0.5645 11 6 1.1595 -2.9679 -1.4502 12 6 1.0011 -4.4978 -1.2740 13 6 1.7159 -4.8007 0.0571 14 6 0.7172 -5.3609 1.0719 15 6 2.8255 -5.7944 -0.1716 16 1 2.9385 -6.2651 -1.1371 17 6 3.6965 -6.1030 0.8518 18 7 4.4722 -7.1609 0.7586 19 14 3.7749 -5.0181 2.3704 20 1 4.7834 -5.5614 3.3154 21 1 2.4438 -4.9906 3.0283 22 1 4.1601 -3.6396 1.9747 23 8 2.2614 -3.5619 0.5408 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8903 -0.5135 27 1 1.6578 2.1325 -0.0004 28 1 5.3532 -0.0044 -0.0005 29 1 4.1193 -2.1346 0.0110 30 1 0.2393 -2.5226 -1.8287 31 1 1.9995 -2.7360 -2.1048 32 1 1.4831 -5.0282 -2.0952 33 1 -0.0531 -4.7675 -1.2110 34 1 1.2468 -5.6579 1.9770 35 1 -0.0198 -4.5959 1.3167 36 1 0.2129 -6.2277 0.6448 37 1 4.3798 -7.7652 0.0055 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383402082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:56 Heat of formation + Delta-G solvation = -92.582293 kcal Electronic energy + Delta-G solvation = -20485.379236 eV Core-core repulsion = 17333.937971 eV Total energy + Delta-G solvation = -3151.441265 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.90663 -41.13121 -39.54995 -35.18217 -33.96291 -33.05942 -32.75514 -30.69195 -28.08619 -27.20505 -26.04412 -23.66031 -22.83002 -21.55179 -21.09544 -19.66006 -18.23721 -17.78162 -17.20036 -16.64262 -16.55482 -15.82664 -15.57585 -15.13560 -14.93683 -14.75953 -14.49648 -14.26272 -14.21961 -14.10153 -13.73036 -13.34984 -12.89447 -12.76020 -12.66878 -12.52971 -12.06783 -11.93688 -11.92437 -11.78342 -11.62467 -11.20871 -11.02318 -10.52783 -10.19840 -9.86640 -9.41039 -8.71665 -6.45747 0.11590 0.26328 1.50872 1.57630 1.84456 2.51461 2.54330 2.97240 3.24240 3.37712 3.74663 3.79416 3.90056 4.00424 4.14889 4.20564 4.29132 4.46866 4.53563 4.64034 4.70341 4.78182 4.84190 4.86916 4.89593 4.95714 5.02484 5.07204 5.16671 5.17271 5.28706 5.33475 5.39759 5.59232 5.67738 5.94249 5.98933 6.05297 6.34997 6.72651 7.36668 8.63195 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.022687 B = 0.007064 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.881195 B = 3962.994620 C = 4640.030807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.047 4.047 3 C -0.151 4.151 4 C 0.086 3.914 5 F -0.145 7.145 6 C -0.170 4.170 7 C -0.083 4.083 8 C -0.098 4.098 9 C 0.106 3.894 10 H 0.094 0.906 11 C -0.127 4.127 12 C -0.129 4.129 13 C 0.186 3.814 14 C -0.157 4.157 15 C -0.591 4.591 16 H 0.027 0.973 17 C -0.002 4.002 18 N -0.940 5.940 19 Si 1.099 2.901 20 H -0.316 1.316 21 H -0.251 1.251 22 H -0.264 1.264 23 O -0.391 6.391 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.164 0.836 28 H 0.139 0.861 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.741 17.388 -1.674 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.047 4.047 3 C -0.170 4.170 4 C 0.067 3.933 5 F -0.124 7.124 6 C -0.189 4.189 7 C -0.101 4.101 8 C -0.098 4.098 9 C 0.049 3.951 10 H 0.111 0.889 11 C -0.165 4.165 12 C -0.167 4.167 13 C 0.148 3.852 14 C -0.214 4.214 15 C -0.629 4.629 16 H 0.045 0.955 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.926 3.074 20 H -0.246 1.246 21 H -0.177 1.177 22 H -0.190 1.190 23 O -0.312 6.312 24 H 0.106 0.894 25 H 0.112 0.888 26 H 0.096 0.904 27 H 0.181 0.819 28 H 0.157 0.843 29 H 0.132 0.868 30 H 0.126 0.874 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.764 17.660 -0.152 20.180 hybrid contribution 0.177 -0.956 -1.872 2.110 sum -9.587 16.704 -2.024 19.366 Atomic orbital electron populations 1.20988 0.87880 1.04637 1.04014 1.19797 0.98068 0.90228 0.96613 1.21191 0.91451 1.00030 1.04281 1.17798 0.90933 0.80696 1.03886 1.91466 1.80601 1.46199 1.94134 1.21221 1.01398 0.91167 1.05066 1.20959 0.94726 0.97560 0.96833 1.19835 0.93615 0.94551 1.01793 1.22033 0.93293 0.85553 0.94244 0.88876 1.23015 1.02732 0.94732 0.96016 1.22842 1.00506 0.95980 0.97383 1.20100 0.91815 0.82225 0.91092 1.22432 0.98638 1.00619 0.99737 1.22201 1.17591 1.24772 0.98290 0.95461 1.27001 0.91928 0.96736 1.04537 1.70985 1.41486 1.12826 1.32271 0.83344 0.76676 0.75037 0.72330 1.24556 1.17653 1.18974 1.88848 1.54199 1.15798 1.72355 0.89438 0.88846 0.90370 0.81881 0.84316 0.86781 0.87450 0.92418 0.93394 0.89747 0.94072 0.91863 0.92430 0.93657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 9.23 71.23 0.66 -1.17 16 2 C -0.05 -1.09 5.88 -19.87 -0.12 -1.21 16 3 C -0.15 -3.37 9.68 22.31 0.22 -3.15 16 4 C 0.09 2.29 7.30 22.37 0.16 2.45 16 5 F -0.15 -3.82 17.27 44.97 0.78 -3.05 16 6 C -0.17 -5.07 10.03 22.31 0.22 -4.85 16 7 C -0.08 -2.84 9.38 22.26 0.21 -2.63 16 8 C -0.10 -2.99 5.12 -19.86 -0.10 -3.09 16 9 C 0.11 3.42 2.65 30.53 0.08 3.51 16 10 H 0.09 2.56 6.88 -2.39 -0.02 2.55 16 11 C -0.13 -3.85 6.42 31.90 0.20 -3.64 16 12 C -0.13 -4.73 6.27 31.58 0.20 -4.53 16 13 C 0.19 8.31 0.70 -11.17 -0.01 8.30 16 14 C -0.16 -6.35 8.30 71.98 0.60 -5.75 16 15 C -0.59 -33.49 8.65 25.60 0.22 -33.27 16 16 H 0.03 1.69 7.61 -2.91 -0.02 1.66 16 17 C 0.00 -0.15 5.34 84.66 0.45 0.30 16 18 N -0.94 -60.05 13.70 21.45 0.29 -59.75 16 19 Si 1.10 55.28 24.83 68.60 1.70 56.99 16 20 H -0.32 -16.31 7.11 99.48 0.71 -15.60 16 21 H -0.25 -11.41 5.61 99.48 0.56 -10.85 16 22 H -0.26 -12.86 6.75 99.48 0.67 -12.19 16 23 O -0.39 -16.95 5.74 -148.98 -0.86 -17.80 16 24 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.09 1.00 8.09 -2.39 -0.02 0.98 16 26 H 0.08 1.17 5.96 -2.38 -0.01 1.15 16 27 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 28 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 29 H 0.11 4.64 7.36 -2.91 -0.02 4.62 16 30 H 0.11 2.34 7.46 -2.38 -0.02 2.33 16 31 H 0.06 1.90 8.05 -2.39 -0.02 1.88 16 32 H 0.05 1.94 7.41 -2.39 -0.02 1.92 16 33 H 0.08 2.58 7.70 -2.39 -0.02 2.56 16 34 H 0.04 1.82 4.68 -2.39 -0.01 1.81 16 35 H 0.06 2.08 8.01 -2.39 -0.02 2.06 16 36 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.25 16.29 8.73 -92.71 -0.81 15.48 16 Total: -1.00 -68.08 296.28 5.76 -62.31 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.85 Total: 10.03 kcal Atomic # 6 Polarization: -51.73 SS G_CDS: 3.00 Total: -48.73 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: 0.29 Total: -59.75 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.86 Total: -17.80 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.78 Total: -3.05 kcal Atomic # 14 Polarization: 55.28 SS G_CDS: 1.70 Total: 56.99 kcal Total: -68.08 5.76 -62.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383402082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.269 kcal (2) G-P(sol) polarization free energy of solvation -68.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds