Wall clock time and date at job start Mon Mar 30 2020 06:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38218 * 119.98906 * 2 1 4 4 C 1.38437 * 119.97343 * 180.27230 * 3 2 1 5 5 F 1.35105 * 120.02745 * 179.76069 * 4 3 2 6 6 C 1.38489 * 119.94965 * 359.74441 * 4 3 2 7 7 C 1.38172 * 119.96950 * 359.97438 * 6 4 3 8 8 C 1.38220 * 119.98344 * 179.76046 * 2 1 3 9 9 C 1.50695 * 119.97610 * 0.02562 * 8 2 1 10 10 H 1.09000 * 110.27403 * 34.08681 * 9 8 2 11 11 C 1.55503 * 110.28603 * 271.92627 * 9 8 2 12 12 C 1.55305 * 100.69731 * 204.65124 * 11 9 8 13 13 C 1.54382 * 102.43395 * 34.13038 * 12 11 9 14 14 C 1.53003 * 109.82908 * 218.93255 * 13 12 11 15 15 C 1.50702 * 109.82741 * 98.05511 * 13 12 11 16 16 H 1.07993 * 120.00345 * 359.97438 * 15 13 12 17 17 C 1.37882 * 119.99898 * 179.97438 * 15 13 12 18 18 N 1.31513 * 119.99797 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00063 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46702 * 90.00564 * 19 17 15 21 21 H 1.48501 * 109.47279 * 210.00147 * 19 17 15 22 22 H 1.48498 * 109.47186 * 330.00408 * 19 17 15 23 23 O 1.43232 * 107.59109 * 338.54226 * 13 12 11 24 24 H 1.08993 * 109.47359 * 270.23969 * 1 2 3 25 25 H 1.09005 * 109.46726 * 30.24168 * 1 2 3 26 26 H 1.08994 * 109.47100 * 150.23556 * 1 2 3 27 27 H 1.07997 * 120.01689 * 0.03714 * 3 2 1 28 28 H 1.07995 * 120.01378 * 179.97438 * 6 4 3 29 29 H 1.08008 * 119.98637 * 179.97438 * 7 6 4 30 30 H 1.08999 * 111.32643 * 86.78064 * 11 9 8 31 31 H 1.08995 * 111.14910 * 322.45486 * 11 9 8 32 32 H 1.09002 * 110.85041 * 275.83884 * 12 11 9 33 33 H 1.09001 * 110.84389 * 152.42021 * 12 11 9 34 34 H 1.08999 * 109.46511 * 60.00470 * 14 13 12 35 35 H 1.09001 * 109.46817 * 180.02562 * 14 13 12 36 36 H 1.08994 * 109.47319 * 300.00138 * 14 13 12 37 37 H 0.97008 * 120.00051 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1971 0.0000 4 6 3.5822 1.1968 -0.0057 5 9 4.2586 2.3663 -0.0106 6 6 4.2733 -0.0034 -0.0060 7 6 3.5805 -1.1988 -0.0002 8 6 2.1978 -1.1972 0.0050 9 6 1.4434 -2.5017 0.0099 10 1 0.5215 -2.4070 -0.5639 11 6 1.1305 -2.9381 1.4692 12 6 0.9861 -4.4736 1.2863 13 6 2.0160 -4.7744 0.1763 14 6 1.4538 -5.8263 -0.7821 15 6 3.2977 -5.2757 0.7904 16 1 3.3807 -5.3733 1.8627 17 6 4.3645 -5.6096 -0.0168 18 7 4.2636 -5.4902 -1.3226 19 14 5.9534 -6.2302 0.7444 20 1 5.9004 -7.7096 0.8634 21 1 7.0992 -5.8438 -0.1176 22 1 6.1237 -5.6309 2.0923 23 8 2.2608 -3.5525 -0.5297 24 1 -0.3634 0.0043 1.0276 25 1 -0.3633 0.8879 -0.5176 26 1 -0.3633 -0.8920 -0.5101 27 1 1.6580 2.1325 0.0006 28 1 5.3533 -0.0049 -0.0109 29 1 4.1192 -2.1350 -0.0008 30 1 0.1998 -2.4956 1.8244 31 1 1.9575 -2.6981 2.1374 32 1 -0.0216 -4.7325 0.9611 33 1 1.2422 -4.9996 2.2060 34 1 0.5357 -5.4516 -1.2347 35 1 2.1855 -6.0345 -1.5628 36 1 1.2400 -6.7422 -0.2315 37 1 5.0142 -5.7248 -1.8906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383402092.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:58 Heat of formation + Delta-G solvation = -88.051876 kcal Electronic energy + Delta-G solvation = -20425.591207 eV Core-core repulsion = 17274.346396 eV Total energy + Delta-G solvation = -3151.244811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.88232 -40.91260 -39.29530 -35.04178 -33.85775 -32.74784 -32.48143 -30.37842 -28.00457 -27.28247 -26.10446 -23.50476 -22.73228 -21.57406 -21.07854 -18.79884 -18.15316 -17.58595 -16.94796 -16.62017 -16.51689 -16.18684 -15.39744 -15.02843 -14.70369 -14.51854 -14.37171 -14.14476 -13.87956 -13.65755 -13.34985 -13.17070 -12.88594 -12.77680 -12.62664 -12.50249 -12.20701 -12.11622 -12.02580 -11.85646 -11.62852 -11.22566 -10.91751 -10.54058 -9.86230 -9.74664 -9.31897 -7.99143 -6.21097 0.18169 0.31707 1.38921 1.41751 1.49501 2.43717 2.59960 3.13319 3.27363 3.57033 3.85198 3.87221 3.94005 4.05172 4.21158 4.28014 4.37781 4.62723 4.66439 4.75716 4.82447 4.89362 4.95493 4.97622 5.06751 5.12371 5.14015 5.20992 5.27063 5.33428 5.39311 5.46037 5.47358 5.69203 5.81583 6.00619 6.15904 6.39906 6.70896 7.18427 7.54189 9.00402 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.019749 B = 0.007078 C = 0.005670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.450751 B = 3955.092368 C = 4937.092272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.052 4.052 3 C -0.153 4.153 4 C 0.083 3.917 5 F -0.146 7.146 6 C -0.172 4.172 7 C -0.075 4.075 8 C -0.097 4.097 9 C 0.106 3.894 10 H 0.079 0.921 11 C -0.124 4.124 12 C -0.139 4.139 13 C 0.214 3.786 14 C -0.135 4.135 15 C -0.543 4.543 16 H 0.051 0.949 17 C 0.037 3.963 18 N -0.887 5.887 19 Si 0.937 3.063 20 H -0.274 1.274 21 H -0.288 1.288 22 H -0.272 1.272 23 O -0.377 6.377 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.163 0.837 28 H 0.135 0.865 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.058 0.942 36 H 0.040 0.960 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.012 10.917 3.604 14.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 C -0.171 4.171 4 C 0.064 3.936 5 F -0.125 7.125 6 C -0.191 4.191 7 C -0.094 4.094 8 C -0.097 4.097 9 C 0.048 3.952 10 H 0.096 0.904 11 C -0.162 4.162 12 C -0.176 4.176 13 C 0.176 3.824 14 C -0.193 4.193 15 C -0.581 4.581 16 H 0.069 0.931 17 C -0.165 4.165 18 N -0.524 5.524 19 Si 0.764 3.236 20 H -0.199 1.199 21 H -0.214 1.214 22 H -0.196 1.196 23 O -0.298 6.298 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.181 0.819 28 H 0.153 0.847 29 H 0.129 0.871 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.750 10.945 3.267 13.803 hybrid contribution 1.600 -0.573 0.261 1.720 sum -6.150 10.371 3.528 12.563 Atomic orbital electron populations 1.20961 0.88001 1.04189 1.04052 1.19815 0.98053 0.90357 0.97030 1.21162 0.91413 0.99960 1.04575 1.17767 0.90922 0.80605 1.04350 1.91456 1.80613 1.46182 1.94218 1.21194 1.01162 0.91280 1.05445 1.20911 0.94845 0.97306 0.96302 1.20048 0.93721 0.95140 1.00821 1.21920 0.92689 0.86261 0.94379 0.90365 1.23143 1.02093 0.95365 0.95590 1.23138 0.99027 0.95862 0.99592 1.19728 0.92308 0.82382 0.87933 1.21900 0.98344 0.98239 1.00837 1.21576 0.99578 1.44369 0.92567 0.93066 1.25613 1.00989 0.94778 0.95098 1.70094 1.31273 1.47189 1.03871 0.85902 0.80371 0.78823 0.78537 1.19941 1.21384 1.19647 1.88709 1.63573 1.18637 1.58836 0.88961 0.89162 0.90912 0.81924 0.84697 0.87114 0.87978 0.92551 0.90740 0.91528 0.95168 0.92350 0.94061 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 9.60 71.24 0.68 -1.52 16 2 C -0.05 -1.43 5.88 -19.87 -0.12 -1.55 16 3 C -0.15 -3.96 9.68 22.31 0.22 -3.74 16 4 C 0.08 2.50 7.30 22.38 0.16 2.67 16 5 F -0.15 -4.28 17.27 44.97 0.78 -3.50 16 6 C -0.17 -5.88 10.03 22.31 0.22 -5.66 16 7 C -0.08 -2.98 9.37 22.26 0.21 -2.77 16 8 C -0.10 -3.44 5.10 -19.86 -0.10 -3.54 16 9 C 0.11 3.95 3.17 30.71 0.10 4.05 16 10 H 0.08 2.63 6.17 -2.39 -0.01 2.62 16 11 C -0.12 -4.19 6.60 32.25 0.21 -3.98 16 12 C -0.14 -5.28 6.06 31.86 0.19 -5.09 16 13 C 0.21 10.29 0.82 -11.07 -0.01 10.28 16 14 C -0.14 -6.46 8.52 71.98 0.61 -5.84 16 15 C -0.54 -29.24 8.23 25.60 0.21 -29.03 16 16 H 0.05 2.73 7.49 -2.91 -0.02 2.71 16 17 C 0.04 2.06 5.26 84.66 0.45 2.50 16 18 N -0.89 -51.14 10.92 21.45 0.23 -50.90 16 19 Si 0.94 43.59 29.54 68.60 2.03 45.61 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 23 O -0.38 -18.59 8.73 -148.98 -1.30 -19.89 16 24 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.09 1.30 8.09 -2.38 -0.02 1.28 16 26 H 0.07 1.45 6.03 -2.39 -0.01 1.44 16 27 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 28 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 29 H 0.11 5.26 7.35 -2.91 -0.02 5.24 16 30 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.06 2.07 8.06 -2.39 -0.02 2.05 16 32 H 0.07 2.48 7.85 -2.39 -0.02 2.46 16 33 H 0.07 2.54 7.61 -2.39 -0.02 2.52 16 34 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 3.17 6.01 -2.39 -0.01 3.15 16 36 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 37 H 0.26 14.23 8.31 -92.70 -0.77 13.46 16 Total: -1.00 -62.43 305.03 5.84 -56.59 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 1.06 Total: 15.31 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 3.04 Total: -43.22 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.23 Total: -50.90 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -1.30 Total: -19.89 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.78 Total: -3.50 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -62.43 5.84 -56.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383402092.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.459 kcal (2) G-P(sol) polarization free energy of solvation -62.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds