Wall clock time and date at job start Mon Mar 30 2020 07:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38213 * 119.98358 * 2 1 4 4 C 1.38440 * 119.97307 * 179.97438 * 3 2 1 5 5 F 1.35099 * 120.02809 * 179.97438 * 4 3 2 6 6 C 1.38486 * 119.94731 * 0.02562 * 4 3 2 7 7 C 1.38176 * 119.97198 * 359.74285 * 6 4 3 8 8 C 1.38218 * 119.98380 * 179.97438 * 2 1 3 9 9 C 1.50697 * 119.97845 * 0.02562 * 8 2 1 10 10 H 1.09002 * 110.55178 * 324.30086 * 9 8 2 11 11 C 1.54998 * 110.61948 * 87.17972 * 9 8 2 12 12 C 1.54809 * 102.09123 * 155.68159 * 11 9 8 13 13 C 1.54094 * 104.18952 * 339.11741 * 12 11 9 14 14 C 1.52999 * 109.87954 * 238.54445 * 13 12 11 15 15 C 1.50705 * 109.87444 * 117.54375 * 13 12 11 16 16 H 1.07991 * 120.00499 * 0.02562 * 15 13 12 17 17 C 1.37887 * 119.99781 * 179.97438 * 15 13 12 18 18 N 1.31516 * 119.99543 * 0.02562 * 17 15 13 19 19 Si 1.86792 * 119.99842 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47489 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46956 * 120.00383 * 19 17 15 22 22 H 1.48502 * 109.47086 * 239.99892 * 19 17 15 23 23 O 1.43741 * 107.29615 * 357.97072 * 13 12 11 24 24 H 1.08996 * 109.46984 * 270.02031 * 1 2 3 25 25 H 1.09003 * 109.46758 * 30.02572 * 1 2 3 26 26 H 1.09007 * 109.46664 * 150.01622 * 1 2 3 27 27 H 1.08000 * 120.02053 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.01338 * 180.02562 * 6 4 3 29 29 H 1.08005 * 119.98775 * 180.24925 * 7 6 4 30 30 H 1.08995 * 110.90427 * 273.88214 * 11 9 8 31 31 H 1.08997 * 110.90503 * 37.48164 * 11 9 8 32 32 H 1.09003 * 110.48765 * 97.79818 * 12 11 9 33 33 H 1.09000 * 110.48379 * 220.44101 * 12 11 9 34 34 H 1.09002 * 109.46976 * 60.00317 * 14 13 12 35 35 H 1.09001 * 109.47056 * 180.02562 * 14 13 12 36 36 H 1.09000 * 109.47312 * 300.00312 * 14 13 12 37 37 H 0.97004 * 119.99204 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1972 0.0000 4 6 3.5822 1.1969 0.0005 5 9 4.2585 2.3664 0.0000 6 6 4.2733 -0.0032 0.0005 7 6 3.5805 -1.1987 0.0054 8 6 2.1978 -1.1972 0.0005 9 6 1.4435 -2.5018 0.0005 10 1 0.5342 -2.4180 0.5957 11 6 1.1090 -2.9389 -1.4484 12 6 0.9523 -4.4716 -1.2968 13 6 1.7109 -4.8020 0.0032 14 6 2.8259 -5.8088 -0.2867 15 6 0.7577 -5.3724 1.0217 16 1 -0.2871 -5.4919 0.7761 17 6 1.2200 -5.7428 2.2669 18 7 2.4925 -5.5977 2.5657 19 14 0.0387 -6.4504 3.5291 20 1 -1.3272 -6.5105 2.9497 21 1 0.4772 -7.8186 3.9049 22 1 0.0274 -5.5853 4.7360 23 8 2.2760 -3.5741 0.4921 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8902 -0.5136 27 1 1.6579 2.1325 0.0004 28 1 5.3533 -0.0046 0.0014 29 1 4.1193 -2.1348 0.0094 30 1 0.1780 -2.4842 -1.7867 31 1 1.9274 -2.6967 -2.1264 32 1 -0.1000 -4.7401 -1.2033 33 1 1.4047 -4.9869 -2.1440 34 1 3.5209 -5.3828 -1.0103 35 1 3.3575 -6.0381 0.6368 36 1 2.3933 -6.7230 -0.6931 37 1 2.8177 -5.8586 3.4416 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383402103.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:00 Heat of formation + Delta-G solvation = -75.642635 kcal Electronic energy + Delta-G solvation = -20313.211775 eV Core-core repulsion = 17162.505069 eV Total energy + Delta-G solvation = -3150.706706 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.69834 -39.53575 -37.79607 -33.20296 -32.61482 -31.11643 -30.92387 -28.85828 -26.92488 -25.25732 -24.58714 -22.20930 -21.44631 -20.10813 -19.36515 -17.00742 -16.53491 -16.35179 -15.59774 -15.41027 -14.95057 -14.48708 -13.91856 -13.55850 -13.47033 -13.12122 -13.01477 -12.82275 -12.51295 -12.29172 -11.84261 -11.61491 -11.35062 -11.06830 -10.96700 -10.90145 -10.76539 -10.51922 -10.43727 -10.23626 -9.89275 -9.49921 -9.19282 -8.65948 -8.50300 -8.22427 -7.88273 -5.96261 -4.13711 1.40115 1.50346 3.27353 3.36335 3.38767 3.82113 4.40440 4.45192 4.79534 5.00859 5.05043 5.26739 5.35172 5.41173 5.54309 5.62611 5.75867 5.76764 5.80579 5.95620 6.13355 6.20719 6.31398 6.35362 6.41579 6.47353 6.56296 6.63710 6.72396 6.85492 6.90913 6.97819 7.10314 7.19006 7.44115 7.77314 8.03023 8.33397 8.56252 8.95977 9.58657 11.04815 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.024209 B = 0.005685 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.327288 B = 4924.281326 C = 4974.834471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.056 4.056 3 C -0.160 4.160 4 C 0.085 3.915 5 F -0.148 7.148 6 C -0.163 4.163 7 C -0.060 4.060 8 C -0.074 4.074 9 C 0.118 3.882 10 H 0.072 0.928 11 C -0.143 4.143 12 C -0.143 4.143 13 C 0.225 3.775 14 C -0.131 4.131 15 C -0.542 4.542 16 H 0.057 0.943 17 C 0.082 3.918 18 N -0.859 5.859 19 Si 0.885 3.115 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.284 1.284 23 O -0.347 6.347 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.144 0.856 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.014 0.986 35 H 0.090 0.910 36 H 0.038 0.962 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.935 9.581 -6.260 11.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.056 4.056 3 C -0.179 4.179 4 C 0.066 3.934 5 F -0.127 7.127 6 C -0.182 4.182 7 C -0.078 4.078 8 C -0.074 4.074 9 C 0.059 3.941 10 H 0.089 0.911 11 C -0.180 4.180 12 C -0.180 4.180 13 C 0.187 3.813 14 C -0.188 4.188 15 C -0.580 4.580 16 H 0.075 0.925 17 C -0.124 4.124 18 N -0.496 5.496 19 Si 0.713 3.287 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 O -0.267 6.267 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.161 0.839 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.109 0.891 36 H 0.057 0.943 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.581 9.601 -5.991 11.332 hybrid contribution -0.630 -0.142 0.704 0.955 sum -1.211 9.459 -5.287 10.903 Atomic orbital electron populations 1.20878 0.90741 1.02995 1.02888 1.19511 0.96279 0.91486 0.98358 1.20829 0.92103 0.98780 1.06209 1.17663 0.90148 0.81069 1.04482 1.91451 1.80445 1.46555 1.94244 1.21140 1.00599 0.91288 1.05171 1.21034 0.93882 0.97810 0.95053 1.19945 0.94045 0.94348 0.99062 1.21554 0.93343 0.85963 0.93200 0.91060 1.23073 1.00602 0.97282 0.97076 1.23098 1.01515 0.93722 0.99708 1.19635 0.90605 0.82579 0.88437 1.21789 0.98197 0.97253 1.01570 1.21473 0.94600 1.43261 0.98676 0.92512 1.24988 0.94865 0.94390 0.98125 1.69954 1.13162 1.45495 1.20963 0.86671 0.81516 0.78790 0.81750 1.19789 1.20955 1.20972 1.89025 1.49502 1.14195 1.73975 0.90666 0.91648 0.90588 0.85277 0.85184 0.83858 0.91919 0.91869 0.91675 0.92711 0.96703 0.89087 0.94320 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 9.25 36.01 0.33 -1.16 16 2 C -0.06 -0.85 5.88 -104.63 -0.62 -1.47 16 3 C -0.16 -2.29 9.68 -39.52 -0.38 -2.67 16 4 C 0.09 1.29 7.30 -39.42 -0.29 1.01 16 5 F -0.15 -2.20 17.27 2.25 0.04 -2.16 16 6 C -0.16 -2.51 10.03 -39.51 -0.40 -2.91 16 7 C -0.06 -1.04 9.39 -39.59 -0.37 -1.41 16 8 C -0.07 -1.30 5.13 -104.62 -0.54 -1.84 16 9 C 0.12 2.35 2.67 -26.83 -0.07 2.27 16 10 H 0.07 1.48 7.09 -51.93 -0.37 1.11 16 11 C -0.14 -2.51 6.37 -24.72 -0.16 -2.67 16 12 C -0.14 -2.85 6.26 -25.21 -0.16 -3.01 16 13 C 0.22 5.40 0.74 -91.20 -0.07 5.33 16 14 C -0.13 -3.09 8.44 37.16 0.31 -2.77 16 15 C -0.54 -14.38 8.20 -34.43 -0.28 -14.66 16 16 H 0.06 1.49 7.33 -52.49 -0.38 1.11 16 17 C 0.08 2.21 5.26 -17.82 -0.09 2.11 16 18 N -0.86 -24.14 10.93 55.43 0.61 -23.53 16 19 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 O -0.35 -8.44 8.94 -35.23 -0.31 -8.75 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 26 H 0.08 0.97 5.77 -51.92 -0.30 0.67 16 27 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 28 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.14 2.64 7.31 -52.48 -0.38 2.25 16 30 H 0.06 0.95 7.27 -51.93 -0.38 0.57 16 31 H 0.06 1.07 8.05 -51.93 -0.42 0.65 16 32 H 0.06 1.29 7.39 -51.93 -0.38 0.90 16 33 H 0.05 1.01 7.70 -51.93 -0.40 0.61 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.09 2.40 6.00 -51.93 -0.31 2.09 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 LS Contribution 303.44 15.07 4.57 4.57 Total: -1.00 -28.44 303.44 -7.89 -36.33 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.00 Total: 1.60 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -2.77 Total: -23.84 kcal Atomic # 7 Polarization: -24.14 SS G_CDS: 0.61 Total: -23.53 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -0.31 Total: -8.75 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.44 -7.89 -36.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383402103.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.315 kcal (2) G-P(sol) polarization free energy of solvation -28.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds