Wall clock time and date at job start Mon Mar 30 2020 07:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38213 * 119.98358 * 2 1 4 4 C 1.38440 * 119.97307 * 179.97438 * 3 2 1 5 5 F 1.35099 * 120.02809 * 179.97438 * 4 3 2 6 6 C 1.38486 * 119.94731 * 0.02562 * 4 3 2 7 7 C 1.38176 * 119.97198 * 359.74285 * 6 4 3 8 8 C 1.38218 * 119.98380 * 179.97438 * 2 1 3 9 9 C 1.50697 * 119.97845 * 0.02562 * 8 2 1 10 10 H 1.09002 * 110.55178 * 324.30086 * 9 8 2 11 11 C 1.54998 * 110.61948 * 87.17972 * 9 8 2 12 12 C 1.54809 * 102.09123 * 155.68159 * 11 9 8 13 13 C 1.54094 * 104.18952 * 339.11741 * 12 11 9 14 14 C 1.52999 * 109.87954 * 238.54445 * 13 12 11 15 15 C 1.50705 * 109.87444 * 117.54375 * 13 12 11 16 16 H 1.07991 * 120.00499 * 0.02562 * 15 13 12 17 17 C 1.37887 * 119.99781 * 179.97438 * 15 13 12 18 18 N 1.31516 * 119.99543 * 0.02562 * 17 15 13 19 19 Si 1.86792 * 119.99842 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47489 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46956 * 120.00383 * 19 17 15 22 22 H 1.48502 * 109.47086 * 239.99892 * 19 17 15 23 23 O 1.43741 * 107.29615 * 357.97072 * 13 12 11 24 24 H 1.08996 * 109.46984 * 270.02031 * 1 2 3 25 25 H 1.09003 * 109.46758 * 30.02572 * 1 2 3 26 26 H 1.09007 * 109.46664 * 150.01622 * 1 2 3 27 27 H 1.08000 * 120.02053 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.01338 * 180.02562 * 6 4 3 29 29 H 1.08005 * 119.98775 * 180.24925 * 7 6 4 30 30 H 1.08995 * 110.90427 * 273.88214 * 11 9 8 31 31 H 1.08997 * 110.90503 * 37.48164 * 11 9 8 32 32 H 1.09003 * 110.48765 * 97.79818 * 12 11 9 33 33 H 1.09000 * 110.48379 * 220.44101 * 12 11 9 34 34 H 1.09002 * 109.46976 * 60.00317 * 14 13 12 35 35 H 1.09001 * 109.47056 * 180.02562 * 14 13 12 36 36 H 1.09000 * 109.47312 * 300.00312 * 14 13 12 37 37 H 0.97004 * 119.99204 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1972 0.0000 4 6 3.5822 1.1969 0.0005 5 9 4.2585 2.3664 0.0000 6 6 4.2733 -0.0032 0.0005 7 6 3.5805 -1.1987 0.0054 8 6 2.1978 -1.1972 0.0005 9 6 1.4435 -2.5018 0.0005 10 1 0.5342 -2.4180 0.5957 11 6 1.1090 -2.9389 -1.4484 12 6 0.9523 -4.4716 -1.2968 13 6 1.7109 -4.8020 0.0032 14 6 2.8259 -5.8088 -0.2867 15 6 0.7577 -5.3724 1.0217 16 1 -0.2871 -5.4919 0.7761 17 6 1.2200 -5.7428 2.2669 18 7 2.4925 -5.5977 2.5657 19 14 0.0387 -6.4504 3.5291 20 1 -1.3272 -6.5105 2.9497 21 1 0.4772 -7.8186 3.9049 22 1 0.0274 -5.5853 4.7360 23 8 2.2760 -3.5741 0.4921 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8902 -0.5136 27 1 1.6579 2.1325 0.0004 28 1 5.3533 -0.0046 0.0014 29 1 4.1193 -2.1348 0.0094 30 1 0.1780 -2.4842 -1.7867 31 1 1.9274 -2.6967 -2.1264 32 1 -0.1000 -4.7401 -1.2033 33 1 1.4047 -4.9869 -2.1440 34 1 3.5209 -5.3828 -1.0103 35 1 3.3575 -6.0381 0.6368 36 1 2.3933 -6.7230 -0.6931 37 1 2.8177 -5.8586 3.4416 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383402103.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:00 Heat of formation + Delta-G solvation = -89.582359 kcal Electronic energy + Delta-G solvation = -20313.816247 eV Core-core repulsion = 17162.505069 eV Total energy + Delta-G solvation = -3151.311178 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.87621 -40.92236 -39.32109 -35.01014 -33.88291 -32.77896 -32.47133 -30.41240 -28.05176 -27.27105 -26.11971 -23.59034 -22.74880 -21.51965 -21.12036 -18.45581 -18.19722 -17.66493 -16.97529 -16.73328 -16.57510 -16.13779 -15.37060 -15.15919 -14.72445 -14.44534 -14.29324 -14.16386 -14.04758 -13.73710 -13.29344 -13.10981 -12.91496 -12.80556 -12.64853 -12.49755 -12.30833 -12.20918 -11.88428 -11.86430 -11.55252 -11.17594 -10.97629 -10.55491 -9.89325 -9.82538 -9.34157 -7.99363 -6.22952 0.16426 0.29779 1.39741 1.42984 1.52442 2.44205 2.58004 3.14681 3.26790 3.51134 3.81909 3.88855 3.94097 4.07427 4.24018 4.33391 4.41063 4.55102 4.66977 4.79964 4.81640 4.83759 4.89322 4.99927 5.04523 5.11133 5.12903 5.17677 5.21551 5.27897 5.37531 5.45450 5.52805 5.67716 5.79808 5.97708 6.10179 6.35342 6.71906 7.03387 7.53174 9.00140 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.024209 B = 0.005685 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.327288 B = 4924.281326 C = 4974.834471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.054 4.054 3 C -0.152 4.152 4 C 0.083 3.917 5 F -0.145 7.145 6 C -0.164 4.164 7 C -0.077 4.077 8 C -0.094 4.094 9 C 0.115 3.885 10 H 0.057 0.943 11 C -0.129 4.129 12 C -0.139 4.139 13 C 0.210 3.790 14 C -0.125 4.125 15 C -0.554 4.554 16 H 0.053 0.947 17 C 0.033 3.967 18 N -0.889 5.889 19 Si 0.943 3.057 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.286 1.286 23 O -0.377 6.377 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.161 0.839 28 H 0.146 0.854 29 H 0.122 0.878 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.229 11.239 -7.123 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.055 4.055 3 C -0.171 4.171 4 C 0.064 3.936 5 F -0.124 7.124 6 C -0.182 4.182 7 C -0.095 4.095 8 C -0.094 4.094 9 C 0.057 3.943 10 H 0.075 0.925 11 C -0.167 4.167 12 C -0.177 4.177 13 C 0.172 3.828 14 C -0.183 4.183 15 C -0.592 4.592 16 H 0.072 0.928 17 C -0.169 4.169 18 N -0.527 5.527 19 Si 0.769 3.231 20 H -0.190 1.190 21 H -0.206 1.206 22 H -0.213 1.213 23 O -0.297 6.297 24 H 0.095 0.905 25 H 0.114 0.886 26 H 0.090 0.910 27 H 0.178 0.822 28 H 0.164 0.836 29 H 0.140 0.860 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.886 11.260 -6.866 13.322 hybrid contribution -0.203 -0.600 0.962 1.152 sum -2.088 10.660 -5.903 12.363 Atomic orbital electron populations 1.20949 0.88760 1.04342 1.03424 1.19757 0.97711 0.90719 0.97280 1.21140 0.91796 0.99655 1.04464 1.17774 0.90700 0.80938 1.04205 1.91463 1.80485 1.46229 1.94183 1.21239 1.01499 0.90835 1.04662 1.20904 0.94082 0.97787 0.96762 1.19909 0.94146 0.94326 1.01052 1.21636 0.92584 0.86003 0.94102 0.92488 1.23014 1.02324 0.95480 0.95858 1.23000 1.00915 0.95679 0.98086 1.19732 0.90535 0.82742 0.89772 1.21693 0.98424 0.97801 1.00372 1.21838 0.94898 1.42932 0.99487 0.92839 1.25692 0.96163 0.95009 1.00020 1.70105 1.14654 1.46782 1.21128 0.85755 0.79975 0.77987 0.79334 1.18962 1.20631 1.21251 1.88972 1.50541 1.15240 1.74907 0.90451 0.88587 0.90981 0.82180 0.83603 0.85966 0.88975 0.91091 0.91678 0.91314 0.95232 0.92217 0.93737 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.25 71.24 0.66 -1.97 16 2 C -0.05 -1.53 5.88 -19.87 -0.12 -1.65 16 3 C -0.15 -3.87 9.68 22.31 0.22 -3.66 16 4 C 0.08 2.33 7.30 22.38 0.16 2.49 16 5 F -0.14 -3.94 17.27 44.97 0.78 -3.16 16 6 C -0.16 -4.88 10.03 22.31 0.22 -4.66 16 7 C -0.08 -2.70 9.39 22.26 0.21 -2.49 16 8 C -0.09 -3.26 5.13 -19.86 -0.10 -3.37 16 9 C 0.12 4.53 2.67 30.53 0.08 4.62 16 10 H 0.06 2.37 7.09 -2.39 -0.02 2.35 16 11 C -0.13 -4.34 6.37 31.90 0.20 -4.14 16 12 C -0.14 -5.40 6.26 31.58 0.20 -5.21 16 13 C 0.21 10.16 0.74 -11.17 -0.01 10.16 16 14 C -0.13 -6.03 8.44 71.98 0.61 -5.42 16 15 C -0.55 -29.64 8.20 25.60 0.21 -29.43 16 16 H 0.05 2.81 7.33 -2.92 -0.02 2.79 16 17 C 0.03 1.82 5.26 84.66 0.45 2.27 16 18 N -0.89 -51.37 10.93 21.45 0.23 -51.13 16 19 Si 0.94 43.20 29.54 68.60 2.03 45.23 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 23 O -0.38 -18.67 8.94 -148.98 -1.33 -20.00 16 24 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.10 1.54 8.09 -2.39 -0.02 1.52 16 26 H 0.07 1.66 5.77 -2.38 -0.01 1.64 16 27 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 28 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 29 H 0.12 4.72 7.31 -2.91 -0.02 4.69 16 30 H 0.09 2.53 7.27 -2.39 -0.02 2.52 16 31 H 0.07 2.27 8.05 -2.39 -0.02 2.25 16 32 H 0.06 2.49 7.39 -2.39 -0.02 2.48 16 33 H 0.07 2.44 7.70 -2.39 -0.02 2.42 16 34 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 3.25 6.00 -2.39 -0.01 3.23 16 36 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -61.58 303.44 5.76 -55.82 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 1.07 Total: 15.69 kcal Atomic # 6 Polarization: -45.44 SS G_CDS: 2.99 Total: -42.45 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.23 Total: -51.13 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -1.33 Total: -20.00 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.78 Total: -3.16 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -61.58 5.76 -55.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383402103.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.764 kcal (2) G-P(sol) polarization free energy of solvation -61.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds